Ggra1309.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1309.t1
Unique NameGgra1309.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:66127..67086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA027CT
PFAMsS6PP
Max annot lvl2759|Eukaryota
Evalue1.97e-45
EggNOG OGs2C0PH@1|root,2S2N0@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1309Ggra1309Gracilaria gracilis GNS1m malegenetig00000092_pilon 66127..67086 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1309.t1.stop1Ggra1309.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 66127..66129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1309.t1.CDS1Ggra1309.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 66127..67086 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1309.t1.exon1Ggra1309.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 66127..67086 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1309.t1.start1Ggra1309.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 67084..67086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1309.t1Ggra1309.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 66127..67086 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1309.t1 ID=Ggra1309.t1|Name=Ggra1309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MSANKVSVLFSDLDGTLVHYPKEFLHYAQIIEETPATADSPEYATIRYNE
TNETRKCVVLSSMTGGKAYLSLRTNQLVARLREMGVIFVIITGARSSTYA
SRRLSLPPADYEFYENGGRKVVGGKLDPSWSDQFKGQVGEIPDRVSFVPD
MPPPNERDGTLWKLYDELVEQGWTTDARNYTTNFRVDVAKSEGKTAAQFA
AIVKEKSASLGLASSYNLGKADLYPAASGKANAAKHILDIRGIDREDSVA
VFDDDNDLELGALVGKGFLPGVTHESVLSALKEHPEWSLSKRMGFLGTEE
ALEKIISLRSEALSASSKA*
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spliced messenger RNA

>Ggra1309.t1 ID=Ggra1309.t1|Name=Ggra1309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000092_pilon:66127..67086- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTAACAAGGTCAGCGTGCTCTTCTCAGATCTGGACGGCACCCT
TGTACATTACCCCAAAGAGTTCTTACACTACGCTCAGATCATAGAGGAAA
CCCCCGCCACTGCCGACTCTCCAGAATATGCAACCATACGCTACAACGAG
ACCAACGAAACTAGAAAATGTGTCGTACTATCTTCGATGACGGGCGGAAA
GGCCTATCTCTCTCTCAGAACAAATCAACTTGTAGCGCGTCTTCGAGAGA
TGGGCGTCATTTTTGTTATCATCACCGGTGCAAGATCCTCTACCTACGCT
TCAAGACGTCTGAGTCTTCCGCCTGCCGATTACGAGTTTTACGAAAACGG
CGGCAGAAAGGTTGTTGGCGGTAAACTAGACCCTTCATGGAGCGACCAGT
TCAAGGGCCAAGTCGGTGAAATTCCAGACCGCGTCAGTTTTGTGCCGGAC
ATGCCACCGCCGAATGAAAGGGATGGGACCTTATGGAAGCTTTATGATGA
GCTGGTTGAACAGGGATGGACCACGGATGCTCGAAATTACACCACCAACT
TCAGGGTGGATGTAGCGAAGAGCGAGGGGAAGACAGCCGCGCAATTCGCA
GCGATTGTGAAAGAGAAAAGTGCTTCACTCGGGTTGGCAAGTTCGTACAA
CCTGGGCAAAGCCGACTTGTATCCGGCTGCATCTGGCAAAGCAAACGCGG
CCAAACATATTTTGGACATTCGCGGTATTGATCGAGAGGATTCTGTGGCT
GTTTTTGACGACGATAACGATCTGGAATTAGGAGCTCTGGTTGGGAAAGG
ATTTCTGCCGGGTGTGACGCACGAAAGTGTTCTTTCCGCTCTGAAGGAAC
ATCCAGAATGGAGCTTATCGAAACGAATGGGGTTCTTGGGGACAGAAGAA
GCGTTGGAAAAGATTATATCGTTGCGAAGTGAAGCGCTGAGCGCTAGCAG
CAAAGCGTGA
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protein sequence of Ggra1309.t1

>Ggra1309.t1 ID=Ggra1309.t1|Name=Ggra1309.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MSANKVSVLFSDLDGTLVHYPKEFLHYAQIIEETPATADSPEYATIRYNE
TNETRKCVVLSSMTGGKAYLSLRTNQLVARLREMGVIFVIITGARSSTYA
SRRLSLPPADYEFYENGGRKVVGGKLDPSWSDQFKGQVGEIPDRVSFVPD
MPPPNERDGTLWKLYDELVEQGWTTDARNYTTNFRVDVAKSEGKTAAQFA
AIVKEKSASLGLASSYNLGKADLYPAASGKANAAKHILDIRGIDREDSVA
VFDDDNDLELGALVGKGFLPGVTHESVLSALKEHPEWSLSKRMGFLGTEE
ALEKIISLRSEALSASSKA*
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mRNA from alignment at tig00000092_pilon:66127..67086-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1309.t1 ID=Ggra1309.t1|Name=Ggra1309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000092_pilon:66127..67086- (Gracilaria gracilis GNS1m male)
ATGTCTGCTAACAAGGTCAGCGTGCTCTTCTCAGATCTGGACGGCACCCT
TGTACATTACCCCAAAGAGTTCTTACACTACGCTCAGATCATAGAGGAAA
CCCCCGCCACTGCCGACTCTCCAGAATATGCAACCATACGCTACAACGAG
ACCAACGAAACTAGAAAATGTGTCGTACTATCTTCGATGACGGGCGGAAA
GGCCTATCTCTCTCTCAGAACAAATCAACTTGTAGCGCGTCTTCGAGAGA
TGGGCGTCATTTTTGTTATCATCACCGGTGCAAGATCCTCTACCTACGCT
TCAAGACGTCTGAGTCTTCCGCCTGCCGATTACGAGTTTTACGAAAACGG
CGGCAGAAAGGTTGTTGGCGGTAAACTAGACCCTTCATGGAGCGACCAGT
TCAAGGGCCAAGTCGGTGAAATTCCAGACCGCGTCAGTTTTGTGCCGGAC
ATGCCACCGCCGAATGAAAGGGATGGGACCTTATGGAAGCTTTATGATGA
GCTGGTTGAACAGGGATGGACCACGGATGCTCGAAATTACACCACCAACT
TCAGGGTGGATGTAGCGAAGAGCGAGGGGAAGACAGCCGCGCAATTCGCA
GCGATTGTGAAAGAGAAAAGTGCTTCACTCGGGTTGGCAAGTTCGTACAA
CCTGGGCAAAGCCGACTTGTATCCGGCTGCATCTGGCAAAGCAAACGCGG
CCAAACATATTTTGGACATTCGCGGTATTGATCGAGAGGATTCTGTGGCT
GTTTTTGACGACGATAACGATCTGGAATTAGGAGCTCTGGTTGGGAAAGG
ATTTCTGCCGGGTGTGACGCACGAAAGTGTTCTTTCCGCTCTGAAGGAAC
ATCCAGAATGGAGCTTATCGAAACGAATGGGGTTCTTGGGGACAGAAGAA
GCGTTGGAAAAGATTATATCGTTGCGAAGTGAAGCGCTGAGCGCTAGCAG
CAAAGCGTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:66127..67086-

>Ggra1309.t1 ID=Ggra1309.t1|Name=Ggra1309.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000092_pilon:66127..67086- (Gracilaria gracilis GNS1m male)
ATGTCTGCTAACAAGGTCAGCGTGCTCTTCTCAGATCTGGACGGCACCCT
TGTACATTACCCCAAAGAGTTCTTACACTACGCTCAGATCATAGAGGAAA
CCCCCGCCACTGCCGACTCTCCAGAATATGCAACCATACGCTACAACGAG
ACCAACGAAACTAGAAAATGTGTCGTACTATCTTCGATGACGGGCGGAAA
GGCCTATCTCTCTCTCAGAACAAATCAACTTGTAGCGCGTCTTCGAGAGA
TGGGCGTCATTTTTGTTATCATCACCGGTGCAAGATCCTCTACCTACGCT
TCAAGACGTCTGAGTCTTCCGCCTGCCGATTACGAGTTTTACGAAAACGG
CGGCAGAAAGGTTGTTGGCGGTAAACTAGACCCTTCATGGAGCGACCAGT
TCAAGGGCCAAGTCGGTGAAATTCCAGACCGCGTCAGTTTTGTGCCGGAC
ATGCCACCGCCGAATGAAAGGGATGGGACCTTATGGAAGCTTTATGATGA
GCTGGTTGAACAGGGATGGACCACGGATGCTCGAAATTACACCACCAACT
TCAGGGTGGATGTAGCGAAGAGCGAGGGGAAGACAGCCGCGCAATTCGCA
GCGATTGTGAAAGAGAAAAGTGCTTCACTCGGGTTGGCAAGTTCGTACAA
CCTGGGCAAAGCCGACTTGTATCCGGCTGCATCTGGCAAAGCAAACGCGG
CCAAACATATTTTGGACATTCGCGGTATTGATCGAGAGGATTCTGTGGCT
GTTTTTGACGACGATAACGATCTGGAATTAGGAGCTCTGGTTGGGAAAGG
ATTTCTGCCGGGTGTGACGCACGAAAGTGTTCTTTCCGCTCTGAAGGAAC
ATCCAGAATGGAGCTTATCGAAACGAATGGGGTTCTTGGGGACAGAAGAA
GCGTTGGAAAAGATTATATCGTTGCGAAGTGAAGCGCTGAGCGCTAGCAG
CAAAGCGTGA
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