Ggra1304.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1304.t1
Unique NameGgra1304.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:53090..54520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702689.1
Preferred nameSLC25A42
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15084,ko:K15085
KEGG TC2.A.29.12.1,2.A.29.12.2
GOsGO:0000295,GO:0003674,GO:0003824,GO:0005215,GO:0005346,GO:0005347,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006855,GO:0006862,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015101,GO:0015215,GO:0015216,GO:0015217,GO:0015228,GO:0015238,GO:0015291,GO:0015297,GO:0015605,GO:0015695,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015880,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0035349,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043262,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051503,GO:0055085,GO:0061024,GO:0071077,GO:0071106,GO:0071702,GO:0071705,GO:0071840,GO:0072530,GO:0080121,GO:0080122,GO:0098573,GO:0098655,GO:0098656,GO:1901264,GO:1901505,GO:1901679,GO:1990542
Evalue2.94e-82
EggNOG OGsKOG0752@1|root,KOG0752@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1304Ggra1304Gracilaria gracilis GNS1m malegenetig00000092_pilon 53090..54520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1304.t1Ggra1304.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 53090..54520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1304.t1.stop1Ggra1304.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 53090..53092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1304.t1.CDS1Ggra1304.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 53090..53314 -
Ggra1304.t1.CDS2Ggra1304.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 53443..53531 -
Ggra1304.t1.CDS3Ggra1304.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000092_pilon 53646..54220 -
Ggra1304.t1.CDS4Ggra1304.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000092_pilon 54387..54520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1304.t1.exon1Ggra1304.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 53090..53314 -
Ggra1304.t1.exon2Ggra1304.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 53443..53531 -
Ggra1304.t1.exon3Ggra1304.t1.exon3Gracilaria gracilis GNS1m maleexontig00000092_pilon 53646..54220 -
Ggra1304.t1.exon4Ggra1304.t1.exon4Gracilaria gracilis GNS1m maleexontig00000092_pilon 54387..54520 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1304.t1.intron1Ggra1304.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 53315..53442 -
Ggra1304.t1.intron2Ggra1304.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000092_pilon 53532..53645 -
Ggra1304.t1.intron3Ggra1304.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000092_pilon 54221..54386 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1304.t1.start1Ggra1304.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 54518..54520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1304.t1 ID=Ggra1304.t1|Name=Ggra1304.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MDRSKTAKDAVNESPNTVPYASLKSFLAGALSGAVAKTAVAPLDRTKILM
QISQMYGWQDYRGSVWDSMKTIWRTEGFFGFFRGNSATIARIMPYAAVQY
SSFEFYHRTLSDYVFHSDSPNSLKRFMAGAMAGSTSVLCTYPFDLARTVL
AVRVAHASPAQSGRQPGIALTLHSIVREEGITGVYRGMYPTLAGVVPYAG
TSFLAYGVLRRAADRRGVSQVYPISTSLACGGTAGLVAQCCTYPFDLVRR
RLQALHKPELMTEQERAFITAATKQSRFGNISIVRAVIFIVNTEGIRGLY
RGIQVNFLKTAPAMSISFTCYDRLRSALGVPPGKYSATRG*
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spliced messenger RNA

>Ggra1304.t1 ID=Ggra1304.t1|Name=Ggra1304.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000092_pilon:53090..54520- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCTCAAAAACAGCGAAGGATGCTGTCAATGAATCCCCCAATAC
AGTTCCATATGCCTCTTTAAAGTCGTTCTTAGCCGGAGCTCTTTCTGGAG
CAGTGGCGAAAACAGCAGTTGCACCACTTGACAGAACGAAGATCCTCATG
CAAATCTCACAAATGTATGGCTGGCAAGATTATCGCGGGTCTGTATGGGA
CTCAATGAAGACAATATGGAGAACTGAGGGATTCTTCGGATTCTTTCGCG
GCAACTCTGCCACAATTGCCCGCATTATGCCCTATGCTGCTGTTCAGTAT
TCCTCATTTGAATTTTATCACCGAACACTATCAGATTACGTCTTTCATTC
TGACTCTCCTAATTCCCTGAAGCGCTTTATGGCCGGTGCGATGGCTGGAT
CAACAAGTGTGCTCTGTACATACCCTTTTGACCTCGCACGAACGGTTTTG
GCTGTTCGAGTTGCACACGCATCCCCAGCCCAATCAGGAAGACAACCTGG
GATTGCATTGACGCTGCATTCAATAGTGCGAGAAGAAGGCATTACTGGTG
TGTACCGTGGTATGTACCCAACATTGGCTGGCGTGGTTCCATACGCTGGA
ACAAGCTTTCTCGCATATGGTGTCCTGAGGAGGGCTGCGGATCGCCGTGG
CGTGTCCCAAGTGTATCCGATATCTACTTCTCTGGCTTGTGGTGGAACCG
CTGGTCTTGTTGCCCAATGCTGTACATATCCTTTTGACTTGGTGCGGCGA
AGGCTGCAGGCGCTTCACAAGCCTGAGCTAATGACTGAACAAGAACGGGC
TTTCATCACTGCAGCCACTAAACAGAGTCGCTTCGGAAATATTTCTATCG
TTCGCGCCGTCATTTTCATAGTCAACACTGAAGGAATTCGCGGACTGTAT
CGTGGAATTCAGGTCAACTTTCTTAAGACTGCGCCAGCCATGTCAATCAG
CTTCACCTGCTACGATAGACTAAGGTCTGCCCTCGGTGTTCCTCCCGGAA
AATACTCAGCTACAAGAGGCTGA
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protein sequence of Ggra1304.t1

>Ggra1304.t1 ID=Ggra1304.t1|Name=Ggra1304.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MDRSKTAKDAVNESPNTVPYASLKSFLAGALSGAVAKTAVAPLDRTKILM
QISQMYGWQDYRGSVWDSMKTIWRTEGFFGFFRGNSATIARIMPYAAVQY
SSFEFYHRTLSDYVFHSDSPNSLKRFMAGAMAGSTSVLCTYPFDLARTVL
AVRVAHASPAQSGRQPGIALTLHSIVREEGITGVYRGMYPTLAGVVPYAG
TSFLAYGVLRRAADRRGVSQVYPISTSLACGGTAGLVAQCCTYPFDLVRR
RLQALHKPELMTEQERAFITAATKQSRFGNISIVRAVIFIVNTEGIRGLY
RGIQVNFLKTAPAMSISFTCYDRLRSALGVPPGKYSATRG*
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mRNA from alignment at tig00000092_pilon:53090..54520-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1304.t1 ID=Ggra1304.t1|Name=Ggra1304.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000092_pilon:53090..54520- (Gracilaria gracilis GNS1m male)
ATGGATCGCTCAAAAACAGCGAAGGATGCTGTCAATGAATCCCCCAATAC
AGTTCCATATGCCTCTTTAAAGTCGTTCTTAGCCGGAGCTCTTTCTGGAG
CAGTGGCGAAAACAGCAGTTGCACCACTTGACAGGTGCGTTCTGAGGAAA
TCGATAGCATTTGCTAAACTGAGCTTCAGTAGCAACATGAAGAATGTGCT
GTCTGAGCGCTTGCGGAATCGTTCCTTTGTCACAGAGTTGCGCGTATCTC
TGACACCTCCTTTCATTTTCGCATAACATTCCCCAATGTTGAACTTGTAG
AACGAAGATCCTCATGCAAATCTCACAAATGTATGGCTGGCAAGATTATC
GCGGGTCTGTATGGGACTCAATGAAGACAATATGGAGAACTGAGGGATTC
TTCGGATTCTTTCGCGGCAACTCTGCCACAATTGCCCGCATTATGCCCTA
TGCTGCTGTTCAGTATTCCTCATTTGAATTTTATCACCGAACACTATCAG
ATTACGTCTTTCATTCTGACTCTCCTAATTCCCTGAAGCGCTTTATGGCC
GGTGCGATGGCTGGATCAACAAGTGTGCTCTGTACATACCCTTTTGACCT
CGCACGAACGGTTTTGGCTGTTCGAGTTGCACACGCATCCCCAGCCCAAT
CAGGAAGACAACCTGGGATTGCATTGACGCTGCATTCAATAGTGCGAGAA
GAAGGCATTACTGGTGTGTACCGTGGTATGTACCCAACATTGGCTGGCGT
GGTTCCATACGCTGGAACAAGCTTTCTCGCATATGGTGTCCTGAGGAGGG
CTGCGGATCGCCGTGGCGTGTCCCAAGTGTATCCGATATCTACTTCTCTG
GCTTGTGGTGGAACCGCTGGTCTTGGTAAGTTGCATTTCCCGGTTGGTAA
CTCCAGCATGCCGTAAATGGGCATTTCGGTCATATCCACATGTCTGAATA
CCTTCGATTTCTAACTCATTCTCATCCGACTTCACAAAGTTGCCCAATGC
TGTACATATCCTTTTGACTTGGTGCGGCGAAGGCTGCAGGCGCTTCACAA
GCCTGAGCTAATGACTGAACAAGAACGGGTAGGTGCTACGAGCTACGTCC
ATCATACATACTTCAGTGGGCTTTAGTACTAACCAGATAATGTATTCCCC
TACGTACCCATTGATGCGCACGCTCGTACTTCTCTTCTCTTGTTGATCTT
TCTAAGGCTTTCATCACTGCAGCCACTAAACAGAGTCGCTTCGGAAATAT
TTCTATCGTTCGCGCCGTCATTTTCATAGTCAACACTGAAGGAATTCGCG
GACTGTATCGTGGAATTCAGGTCAACTTTCTTAAGACTGCGCCAGCCATG
TCAATCAGCTTCACCTGCTACGATAGACTAAGGTCTGCCCTCGGTGTTCC
TCCCGGAAAATACTCAGCTACAAGAGGCTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:53090..54520-

>Ggra1304.t1 ID=Ggra1304.t1|Name=Ggra1304.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000092_pilon:53090..54520- (Gracilaria gracilis GNS1m male)
ATGGATCGCTCAAAAACAGCGAAGGATGCTGTCAATGAATCCCCCAATAC
AGTTCCATATGCCTCTTTAAAGTCGTTCTTAGCCGGAGCTCTTTCTGGAG
CAGTGGCGAAAACAGCAGTTGCACCACTTGACAGAACGAAGATCCTCATG
CAAATCTCACAAATGTATGGCTGGCAAGATTATCGCGGGTCTGTATGGGA
CTCAATGAAGACAATATGGAGAACTGAGGGATTCTTCGGATTCTTTCGCG
GCAACTCTGCCACAATTGCCCGCATTATGCCCTATGCTGCTGTTCAGTAT
TCCTCATTTGAATTTTATCACCGAACACTATCAGATTACGTCTTTCATTC
TGACTCTCCTAATTCCCTGAAGCGCTTTATGGCCGGTGCGATGGCTGGAT
CAACAAGTGTGCTCTGTACATACCCTTTTGACCTCGCACGAACGGTTTTG
GCTGTTCGAGTTGCACACGCATCCCCAGCCCAATCAGGAAGACAACCTGG
GATTGCATTGACGCTGCATTCAATAGTGCGAGAAGAAGGCATTACTGGTG
TGTACCGTGGTATGTACCCAACATTGGCTGGCGTGGTTCCATACGCTGGA
ACAAGCTTTCTCGCATATGGTGTCCTGAGGAGGGCTGCGGATCGCCGTGG
CGTGTCCCAAGTGTATCCGATATCTACTTCTCTGGCTTGTGGTGGAACCG
CTGGTCTTGTTGCCCAATGCTGTACATATCCTTTTGACTTGGTGCGGCGA
AGGCTGCAGGCGCTTCACAAGCCTGAGCTAATGACTGAACAAGAACGGGC
TTTCATCACTGCAGCCACTAAACAGAGTCGCTTCGGAAATATTTCTATCG
TTCGCGCCGTCATTTTCATAGTCAACACTGAAGGAATTCGCGGACTGTAT
CGTGGAATTCAGGTCAACTTTCTTAAGACTGCGCCAGCCATGTCAATCAG
CTTCACCTGCTACGATAGACTAAGGTCTGCCCTCGGTGTTCCTCCCGGAA
AATACTCAGCTACAAGAGGCTGA
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