Ggra1302.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1302.t1
Unique NameGgra1302.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:48438..50198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706011.1
Preferred nameSLC37A4
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K08171,ko:K13783,ko:K14004,ko:K15108
KEGG TC2.A.1.4,2.A.1.4.5,2.A.29.16,2.A.29.28
KEGG Pathwayko03013,ko04141,ko04150,ko04973,map03013,map04141,map04150,map04973
KEGG ModuleM00404,M00427
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0009058,GO:0012505,GO:0015075,GO:0015103,GO:0015114,GO:0015119,GO:0015152,GO:0015291,GO:0015297,GO:0015301,GO:0015315,GO:0015318,GO:0015526,GO:0015605,GO:0015698,GO:0015711,GO:0015712,GO:0015748,GO:0015760,GO:0016020,GO:0016021,GO:0016051,GO:0019318,GO:0019319,GO:0022804,GO:0022857,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033500,GO:0034220,GO:0035435,GO:0042175,GO:0042592,GO:0042593,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0048878,GO:0051179,GO:0051234,GO:0055085,GO:0061513,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0098656,GO:0098660,GO:0098661,GO:0098827,GO:0099516,GO:1901264,GO:1901505,GO:1901576
Evalue1.07e-204
EggNOG OGsCOG0477@1|root,KOG2533@2759|Eukaryota
Descriptiontransmembrane transport
COG categoryEGP
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1302Ggra1302Gracilaria gracilis GNS1m malegenetig00000092_pilon 48438..50198 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1302.t1.stop1Ggra1302.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 48438..48440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1302.t1.CDS1Ggra1302.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 48438..50198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1302.t1.exon1Ggra1302.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 48438..50198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1302.t1.start1Ggra1302.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 50196..50198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1302.t1Ggra1302.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 48438..50198 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1302.t1 ID=Ggra1302.t1|Name=Ggra1302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MAPRAAAFVSPAALPLQSPQLALSSSSSRWIRSRALPNRVKAKVHHVATS
SHTEPQMAAVGAGQKPDQPATEADAAVEKQYLKWRIRIFYSIFTGYASFY
LTRNSFIYVAPVMRQALGFSLEQLGIIMSVFPLAYGFSKLVAGILSDRFS
TRLFMSIGLAVTGVINILFGFQTSLYAFIALWLANGFFQAAGAPPCAKLL
TTWYSRSERGTWWGFWNTSHNTGGFLIPLLAGYCARAFGWQYGMIVPGVI
SIFMGAFLFNRLRDKPESVGLPPVDEADAQENENKQDKQEEEDLTPRQKL
FKYVLSNPYVWLLAVSYFFVYFVRQGVSSWAHIFLLDYKGVVDAQEAAFR
VSGMEIGGLLGSLVSGWASDKMMRGRRIPIIVLWLIGVMASVACLWFVPT
TWRYACWLAVFCIGFFIYGPQMLVGLAGAEIVDKSAVSSTIGLLGWIAYL
GAAVSGYPLTKIVSKLGWGAYFASLIGFAAIAMILLLPMWRLGMGAKKKP
IPKVPEVAPLVPGVPAVAVAGAPAGGLVAVPSAVKFIACNTCAGTGSLMK
LECGPATPSQTLSCKYLETPCPWCGGTGYLQETNGV*
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spliced messenger RNA

>Ggra1302.t1 ID=Ggra1302.t1|Name=Ggra1302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000092_pilon:48438..50198- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTCGTGCCGCGGCGTTCGTGTCACCGGCTGCCTTGCCGCTGCA
ATCCCCTCAGCTCGCCCTGTCGTCCTCATCTTCACGCTGGATCCGCAGCA
GAGCGCTCCCCAACCGCGTCAAAGCAAAAGTTCATCATGTCGCCACCAGT
TCCCACACTGAACCTCAGATGGCTGCGGTTGGCGCAGGTCAAAAGCCTGA
CCAGCCTGCAACCGAAGCCGATGCCGCCGTGGAGAAGCAGTACTTGAAAT
GGCGCATTCGCATCTTCTACTCCATTTTCACAGGCTACGCGTCTTTTTAC
CTCACTCGCAACTCCTTCATATATGTCGCACCTGTGATGAGACAAGCATT
GGGATTTTCTCTGGAGCAATTGGGTATCATCATGTCCGTGTTCCCTCTGG
CCTACGGGTTCTCCAAGCTCGTCGCAGGCATTTTGTCTGATAGGTTCTCT
ACCAGATTGTTCATGTCCATTGGGCTTGCCGTCACAGGCGTCATCAACAT
TCTTTTTGGCTTTCAAACAAGTTTGTATGCCTTCATAGCACTATGGCTTG
CGAATGGCTTCTTCCAGGCAGCCGGAGCTCCCCCGTGTGCCAAATTGCTT
ACTACGTGGTACTCCCGCTCCGAAAGAGGTACGTGGTGGGGTTTTTGGAA
CACAAGCCACAACACTGGTGGTTTTCTCATTCCTTTGCTTGCAGGTTATT
GCGCCCGCGCTTTTGGATGGCAATATGGCATGATTGTGCCTGGTGTGATT
TCTATATTTATGGGTGCCTTCTTGTTTAATCGCTTACGCGACAAACCAGA
ATCTGTTGGGCTACCGCCTGTTGATGAGGCTGATGCCCAGGAGAACGAAA
ACAAACAAGACAAGCAAGAAGAAGAAGATCTCACTCCTAGACAAAAGCTA
TTCAAGTATGTTCTCTCAAATCCTTATGTATGGCTTCTTGCTGTGAGTTA
CTTTTTCGTGTATTTCGTGAGACAAGGAGTTAGTAGTTGGGCACACATAT
TCCTTCTTGACTACAAGGGGGTAGTAGATGCTCAAGAGGCTGCGTTCAGA
GTAAGCGGAATGGAGATTGGTGGACTCCTGGGATCATTGGTCTCTGGGTG
GGCAAGCGATAAAATGATGCGTGGACGTCGAATTCCCATCATTGTGCTTT
GGTTGATAGGTGTCATGGCCAGCGTCGCGTGCTTATGGTTTGTACCAACT
ACGTGGAGATATGCATGCTGGTTAGCAGTCTTCTGCATTGGGTTTTTCAT
TTATGGGCCTCAGATGCTTGTTGGTTTGGCCGGCGCTGAGATCGTGGACA
AATCAGCGGTTTCTTCAACGATTGGCTTACTCGGGTGGATTGCGTACCTG
GGAGCTGCTGTTTCTGGATATCCGCTCACCAAAATTGTTAGCAAGCTCGG
TTGGGGTGCCTACTTCGCGTCCTTAATCGGTTTCGCCGCGATCGCTATGA
TATTGCTGCTGCCCATGTGGAGATTGGGCATGGGCGCCAAGAAGAAGCCT
ATACCTAAGGTGCCGGAAGTTGCACCTTTGGTGCCAGGCGTACCTGCAGT
AGCAGTTGCTGGGGCTCCGGCTGGCGGGTTGGTGGCGGTGCCCAGTGCCG
TCAAGTTCATTGCATGTAACACATGTGCTGGAACCGGATCTCTCATGAAA
CTAGAATGCGGTCCTGCCACTCCATCGCAAACTCTCAGTTGCAAATACTT
GGAGACCCCTTGTCCATGGTGCGGCGGAACTGGCTACCTTCAAGAAACCA
ACGGAGTATGA
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protein sequence of Ggra1302.t1

>Ggra1302.t1 ID=Ggra1302.t1|Name=Ggra1302.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MAPRAAAFVSPAALPLQSPQLALSSSSSRWIRSRALPNRVKAKVHHVATS
SHTEPQMAAVGAGQKPDQPATEADAAVEKQYLKWRIRIFYSIFTGYASFY
LTRNSFIYVAPVMRQALGFSLEQLGIIMSVFPLAYGFSKLVAGILSDRFS
TRLFMSIGLAVTGVINILFGFQTSLYAFIALWLANGFFQAAGAPPCAKLL
TTWYSRSERGTWWGFWNTSHNTGGFLIPLLAGYCARAFGWQYGMIVPGVI
SIFMGAFLFNRLRDKPESVGLPPVDEADAQENENKQDKQEEEDLTPRQKL
FKYVLSNPYVWLLAVSYFFVYFVRQGVSSWAHIFLLDYKGVVDAQEAAFR
VSGMEIGGLLGSLVSGWASDKMMRGRRIPIIVLWLIGVMASVACLWFVPT
TWRYACWLAVFCIGFFIYGPQMLVGLAGAEIVDKSAVSSTIGLLGWIAYL
GAAVSGYPLTKIVSKLGWGAYFASLIGFAAIAMILLLPMWRLGMGAKKKP
IPKVPEVAPLVPGVPAVAVAGAPAGGLVAVPSAVKFIACNTCAGTGSLMK
LECGPATPSQTLSCKYLETPCPWCGGTGYLQETNGV*
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mRNA from alignment at tig00000092_pilon:48438..50198-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1302.t1 ID=Ggra1302.t1|Name=Ggra1302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000092_pilon:48438..50198- (Gracilaria gracilis GNS1m male)
ATGGCTCCTCGTGCCGCGGCGTTCGTGTCACCGGCTGCCTTGCCGCTGCA
ATCCCCTCAGCTCGCCCTGTCGTCCTCATCTTCACGCTGGATCCGCAGCA
GAGCGCTCCCCAACCGCGTCAAAGCAAAAGTTCATCATGTCGCCACCAGT
TCCCACACTGAACCTCAGATGGCTGCGGTTGGCGCAGGTCAAAAGCCTGA
CCAGCCTGCAACCGAAGCCGATGCCGCCGTGGAGAAGCAGTACTTGAAAT
GGCGCATTCGCATCTTCTACTCCATTTTCACAGGCTACGCGTCTTTTTAC
CTCACTCGCAACTCCTTCATATATGTCGCACCTGTGATGAGACAAGCATT
GGGATTTTCTCTGGAGCAATTGGGTATCATCATGTCCGTGTTCCCTCTGG
CCTACGGGTTCTCCAAGCTCGTCGCAGGCATTTTGTCTGATAGGTTCTCT
ACCAGATTGTTCATGTCCATTGGGCTTGCCGTCACAGGCGTCATCAACAT
TCTTTTTGGCTTTCAAACAAGTTTGTATGCCTTCATAGCACTATGGCTTG
CGAATGGCTTCTTCCAGGCAGCCGGAGCTCCCCCGTGTGCCAAATTGCTT
ACTACGTGGTACTCCCGCTCCGAAAGAGGTACGTGGTGGGGTTTTTGGAA
CACAAGCCACAACACTGGTGGTTTTCTCATTCCTTTGCTTGCAGGTTATT
GCGCCCGCGCTTTTGGATGGCAATATGGCATGATTGTGCCTGGTGTGATT
TCTATATTTATGGGTGCCTTCTTGTTTAATCGCTTACGCGACAAACCAGA
ATCTGTTGGGCTACCGCCTGTTGATGAGGCTGATGCCCAGGAGAACGAAA
ACAAACAAGACAAGCAAGAAGAAGAAGATCTCACTCCTAGACAAAAGCTA
TTCAAGTATGTTCTCTCAAATCCTTATGTATGGCTTCTTGCTGTGAGTTA
CTTTTTCGTGTATTTCGTGAGACAAGGAGTTAGTAGTTGGGCACACATAT
TCCTTCTTGACTACAAGGGGGTAGTAGATGCTCAAGAGGCTGCGTTCAGA
GTAAGCGGAATGGAGATTGGTGGACTCCTGGGATCATTGGTCTCTGGGTG
GGCAAGCGATAAAATGATGCGTGGACGTCGAATTCCCATCATTGTGCTTT
GGTTGATAGGTGTCATGGCCAGCGTCGCGTGCTTATGGTTTGTACCAACT
ACGTGGAGATATGCATGCTGGTTAGCAGTCTTCTGCATTGGGTTTTTCAT
TTATGGGCCTCAGATGCTTGTTGGTTTGGCCGGCGCTGAGATCGTGGACA
AATCAGCGGTTTCTTCAACGATTGGCTTACTCGGGTGGATTGCGTACCTG
GGAGCTGCTGTTTCTGGATATCCGCTCACCAAAATTGTTAGCAAGCTCGG
TTGGGGTGCCTACTTCGCGTCCTTAATCGGTTTCGCCGCGATCGCTATGA
TATTGCTGCTGCCCATGTGGAGATTGGGCATGGGCGCCAAGAAGAAGCCT
ATACCTAAGGTGCCGGAAGTTGCACCTTTGGTGCCAGGCGTACCTGCAGT
AGCAGTTGCTGGGGCTCCGGCTGGCGGGTTGGTGGCGGTGCCCAGTGCCG
TCAAGTTCATTGCATGTAACACATGTGCTGGAACCGGATCTCTCATGAAA
CTAGAATGCGGTCCTGCCACTCCATCGCAAACTCTCAGTTGCAAATACTT
GGAGACCCCTTGTCCATGGTGCGGCGGAACTGGCTACCTTCAAGAAACCA
ACGGAGTATGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:48438..50198-

>Ggra1302.t1 ID=Ggra1302.t1|Name=Ggra1302.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000092_pilon:48438..50198- (Gracilaria gracilis GNS1m male)
ATGGCTCCTCGTGCCGCGGCGTTCGTGTCACCGGCTGCCTTGCCGCTGCA
ATCCCCTCAGCTCGCCCTGTCGTCCTCATCTTCACGCTGGATCCGCAGCA
GAGCGCTCCCCAACCGCGTCAAAGCAAAAGTTCATCATGTCGCCACCAGT
TCCCACACTGAACCTCAGATGGCTGCGGTTGGCGCAGGTCAAAAGCCTGA
CCAGCCTGCAACCGAAGCCGATGCCGCCGTGGAGAAGCAGTACTTGAAAT
GGCGCATTCGCATCTTCTACTCCATTTTCACAGGCTACGCGTCTTTTTAC
CTCACTCGCAACTCCTTCATATATGTCGCACCTGTGATGAGACAAGCATT
GGGATTTTCTCTGGAGCAATTGGGTATCATCATGTCCGTGTTCCCTCTGG
CCTACGGGTTCTCCAAGCTCGTCGCAGGCATTTTGTCTGATAGGTTCTCT
ACCAGATTGTTCATGTCCATTGGGCTTGCCGTCACAGGCGTCATCAACAT
TCTTTTTGGCTTTCAAACAAGTTTGTATGCCTTCATAGCACTATGGCTTG
CGAATGGCTTCTTCCAGGCAGCCGGAGCTCCCCCGTGTGCCAAATTGCTT
ACTACGTGGTACTCCCGCTCCGAAAGAGGTACGTGGTGGGGTTTTTGGAA
CACAAGCCACAACACTGGTGGTTTTCTCATTCCTTTGCTTGCAGGTTATT
GCGCCCGCGCTTTTGGATGGCAATATGGCATGATTGTGCCTGGTGTGATT
TCTATATTTATGGGTGCCTTCTTGTTTAATCGCTTACGCGACAAACCAGA
ATCTGTTGGGCTACCGCCTGTTGATGAGGCTGATGCCCAGGAGAACGAAA
ACAAACAAGACAAGCAAGAAGAAGAAGATCTCACTCCTAGACAAAAGCTA
TTCAAGTATGTTCTCTCAAATCCTTATGTATGGCTTCTTGCTGTGAGTTA
CTTTTTCGTGTATTTCGTGAGACAAGGAGTTAGTAGTTGGGCACACATAT
TCCTTCTTGACTACAAGGGGGTAGTAGATGCTCAAGAGGCTGCGTTCAGA
GTAAGCGGAATGGAGATTGGTGGACTCCTGGGATCATTGGTCTCTGGGTG
GGCAAGCGATAAAATGATGCGTGGACGTCGAATTCCCATCATTGTGCTTT
GGTTGATAGGTGTCATGGCCAGCGTCGCGTGCTTATGGTTTGTACCAACT
ACGTGGAGATATGCATGCTGGTTAGCAGTCTTCTGCATTGGGTTTTTCAT
TTATGGGCCTCAGATGCTTGTTGGTTTGGCCGGCGCTGAGATCGTGGACA
AATCAGCGGTTTCTTCAACGATTGGCTTACTCGGGTGGATTGCGTACCTG
GGAGCTGCTGTTTCTGGATATCCGCTCACCAAAATTGTTAGCAAGCTCGG
TTGGGGTGCCTACTTCGCGTCCTTAATCGGTTTCGCCGCGATCGCTATGA
TATTGCTGCTGCCCATGTGGAGATTGGGCATGGGCGCCAAGAAGAAGCCT
ATACCTAAGGTGCCGGAAGTTGCACCTTTGGTGCCAGGCGTACCTGCAGT
AGCAGTTGCTGGGGCTCCGGCTGGCGGGTTGGTGGCGGTGCCCAGTGCCG
TCAAGTTCATTGCATGTAACACATGTGCTGGAACCGGATCTCTCATGAAA
CTAGAATGCGGTCCTGCCACTCCATCGCAAACTCTCAGTTGCAAATACTT
GGAGACCCCTTGTCCATGGTGCGGCGGAACTGGCTACCTTCAAGAAACCA
ACGGAGTATGA
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