Ggra1301.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1301.t1
Unique Name	Ggra1301.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000235_pilon	contig	tig00000235_pilon:94763..96085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	570268.ANBB01000045_gene1135
PFAMs	Inhibitor_I9,Peptidase_S8
Max annot lvl	201174\|Actinobacteria
Evalue	6.49e-36
EggNOG OGs	COG1404@1\|root,COG1404@2\|Bacteria,2GJYH@201174\|Actinobacteria,4EI5B@85012\|Streptosporangiales
Description	Peptidase inhibitor I9
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1301	Ggra1301	Gracilaria gracilis GNS1m male	gene	tig00000235_pilon 94763..96085 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1301.t1.start1	Ggra1301.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000235_pilon 94763..94765 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1301.t1.CDS1	Ggra1301.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000235_pilon 94763..96085 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1301.t1.exon1	Ggra1301.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000235_pilon 94763..96085 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1301.t1.stop1	Ggra1301.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000235_pilon 96083..96085 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1301.t1	Ggra1301.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000235_pilon 94763..96085 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000235_pilon:94763..96085+
coding sequence from alignment at tig00000235_pilon:94763..96085+

mRNA sequence

>Ggra1301.t1 ID=Ggra1301.t1|Name=Ggra1301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MTRSSAFITVLLLLALTFTPSVAQRDNANRADRANERANAVEDARVRNNP
RTQPPEARIGAAAFREDIARNKGDRIDGEFIVQLNGDCDGRCRGKIQSSI
NADAATRGCTIGKRQIKIGGLRFVNLKCPEGRNLRRDKVDSAIRPSLNSR
DAAQISLVEEDFVVTLDGVSTSLWGVDEADGGVTVQGGSAIRDSMRTCSD
TSNNGQGVDVWILDTGCAPTFGGKCFGYFGGSCFDGNGHGSHVGGTATDA
LYGVAPQARKNCVKVLNDRGSGSYFIAIQAIEYVLNNKGPNGNIINFSLS
GPSYLPLNNAVEAAAAEGVYFTLAAGNAAQPVCGFSPASAVSERVFAVQA
HDVSAAAAWFTNYSTASEDCTHLSAPGVAITSFGGTVSGTSMAAPHVAGA
IALLISDNRDPTLDTLTANGVSIAPGGVALSKSSLGLACT*

spliced messenger RNA

>Ggra1301.t1 ID=Ggra1301.t1|Name=Ggra1301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000235_pilon:94763..96085+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCTCATCTGCATTCATCACCGTGCTTCTCTTATTGGCGCTCAC
CTTCACGCCATCAGTCGCGCAGAGAGACAATGCAAACAGAGCTGACAGAG
CAAATGAAAGGGCGAACGCTGTTGAGGACGCAAGGGTCAGAAACAATCCT
AGAACCCAACCACCCGAAGCCCGCATAGGCGCTGCCGCCTTCAGAGAGGA
CATTGCTCGAAACAAGGGCGACAGAATTGATGGCGAGTTCATCGTGCAAC
TTAATGGCGACTGTGACGGCAGATGTCGAGGAAAAATTCAGAGCTCCATC
AACGCAGACGCCGCAACGAGAGGCTGTACCATTGGCAAGAGACAAATCAA
GATTGGCGGTTTGAGATTCGTCAATCTCAAATGCCCGGAGGGAAGAAACT
TGCGACGGGATAAAGTTGACTCCGCCATTAGACCTTCTTTGAACTCGCGC
GACGCGGCACAGATTTCTCTCGTTGAAGAGGACTTTGTCGTCACTCTTGA
CGGAGTGTCCACCAGTTTGTGGGGCGTGGATGAGGCAGATGGTGGAGTAA
CTGTGCAGGGTGGTTCCGCCATCAGAGACAGTATGAGAACGTGCAGTGAC
ACCAGCAATAACGGTCAAGGGGTGGATGTGTGGATTCTTGACACCGGTTG
TGCTCCCACCTTCGGAGGGAAATGCTTTGGATATTTTGGTGGCTCGTGTT
TCGATGGAAACGGTCACGGAAGTCATGTAGGCGGAACAGCCACGGACGCC
CTGTACGGTGTGGCCCCCCAAGCACGAAAGAATTGTGTGAAGGTGCTAAA
CGACAGGGGATCAGGATCGTACTTCATCGCAATCCAGGCAATTGAGTATG
TGCTCAACAACAAAGGACCTAACGGCAACATCATTAACTTTTCACTTAGC
GGGCCATCTTACCTCCCTTTGAACAACGCCGTAGAAGCCGCTGCTGCCGA
AGGAGTTTATTTCACTCTGGCTGCCGGTAATGCAGCGCAGCCCGTTTGTG
GCTTTTCACCCGCGTCTGCAGTCAGTGAGAGAGTATTCGCCGTTCAAGCA
CATGACGTGTCAGCGGCTGCTGCTTGGTTCACCAATTACTCCACCGCGAG
TGAAGACTGTACTCACCTCTCTGCACCAGGTGTCGCCATCACATCTTTCG
GGGGAACGGTTTCGGGAACTTCAATGGCCGCTCCCCATGTCGCTGGAGCT
ATAGCCTTGTTGATCTCGGACAACAGAGATCCGACACTCGACACATTAAC
TGCGAATGGTGTCAGTATTGCACCCGGCGGAGTTGCCTTGAGCAAGTCCT
CTTTGGGTCTAGCTTGTACATAA

protein sequence of Ggra1301.t1

>Ggra1301.t1 ID=Ggra1301.t1|Name=Ggra1301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MTRSSAFITVLLLLALTFTPSVAQRDNANRADRANERANAVEDARVRNNP
RTQPPEARIGAAAFREDIARNKGDRIDGEFIVQLNGDCDGRCRGKIQSSI
NADAATRGCTIGKRQIKIGGLRFVNLKCPEGRNLRRDKVDSAIRPSLNSR
DAAQISLVEEDFVVTLDGVSTSLWGVDEADGGVTVQGGSAIRDSMRTCSD
TSNNGQGVDVWILDTGCAPTFGGKCFGYFGGSCFDGNGHGSHVGGTATDA
LYGVAPQARKNCVKVLNDRGSGSYFIAIQAIEYVLNNKGPNGNIINFSLS
GPSYLPLNNAVEAAAAEGVYFTLAAGNAAQPVCGFSPASAVSERVFAVQA
HDVSAAAAWFTNYSTASEDCTHLSAPGVAITSFGGTVSGTSMAAPHVAGA
IALLISDNRDPTLDTLTANGVSIAPGGVALSKSSLGLACT*

mRNA from alignment at tig00000235_pilon:94763..96085+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1301.t1 ID=Ggra1301.t1|Name=Ggra1301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000235_pilon:94763..96085+ (Gracilaria gracilis GNS1m male)
ATGACACGCTCATCTGCATTCATCACCGTGCTTCTCTTATTGGCGCTCAC
CTTCACGCCATCAGTCGCGCAGAGAGACAATGCAAACAGAGCTGACAGAG
CAAATGAAAGGGCGAACGCTGTTGAGGACGCAAGGGTCAGAAACAATCCT
AGAACCCAACCACCCGAAGCCCGCATAGGCGCTGCCGCCTTCAGAGAGGA
CATTGCTCGAAACAAGGGCGACAGAATTGATGGCGAGTTCATCGTGCAAC
TTAATGGCGACTGTGACGGCAGATGTCGAGGAAAAATTCAGAGCTCCATC
AACGCAGACGCCGCAACGAGAGGCTGTACCATTGGCAAGAGACAAATCAA
GATTGGCGGTTTGAGATTCGTCAATCTCAAATGCCCGGAGGGAAGAAACT
TGCGACGGGATAAAGTTGACTCCGCCATTAGACCTTCTTTGAACTCGCGC
GACGCGGCACAGATTTCTCTCGTTGAAGAGGACTTTGTCGTCACTCTTGA
CGGAGTGTCCACCAGTTTGTGGGGCGTGGATGAGGCAGATGGTGGAGTAA
CTGTGCAGGGTGGTTCCGCCATCAGAGACAGTATGAGAACGTGCAGTGAC
ACCAGCAATAACGGTCAAGGGGTGGATGTGTGGATTCTTGACACCGGTTG
TGCTCCCACCTTCGGAGGGAAATGCTTTGGATATTTTGGTGGCTCGTGTT
TCGATGGAAACGGTCACGGAAGTCATGTAGGCGGAACAGCCACGGACGCC
CTGTACGGTGTGGCCCCCCAAGCACGAAAGAATTGTGTGAAGGTGCTAAA
CGACAGGGGATCAGGATCGTACTTCATCGCAATCCAGGCAATTGAGTATG
TGCTCAACAACAAAGGACCTAACGGCAACATCATTAACTTTTCACTTAGC
GGGCCATCTTACCTCCCTTTGAACAACGCCGTAGAAGCCGCTGCTGCCGA
AGGAGTTTATTTCACTCTGGCTGCCGGTAATGCAGCGCAGCCCGTTTGTG
GCTTTTCACCCGCGTCTGCAGTCAGTGAGAGAGTATTCGCCGTTCAAGCA
CATGACGTGTCAGCGGCTGCTGCTTGGTTCACCAATTACTCCACCGCGAG
TGAAGACTGTACTCACCTCTCTGCACCAGGTGTCGCCATCACATCTTTCG
GGGGAACGGTTTCGGGAACTTCAATGGCCGCTCCCCATGTCGCTGGAGCT
ATAGCCTTGTTGATCTCGGACAACAGAGATCCGACACTCGACACATTAAC
TGCGAATGGTGTCAGTATTGCACCCGGCGGAGTTGCCTTGAGCAAGTCCT
CTTTGGGTCTAGCTTGTACATAA

Coding sequence (CDS) from alignment at tig00000235_pilon:94763..96085+

>Ggra1301.t1 ID=Ggra1301.t1|Name=Ggra1301.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000235_pilon:94763..96085+ (Gracilaria gracilis GNS1m male)
ATGACACGCTCATCTGCATTCATCACCGTGCTTCTCTTATTGGCGCTCAC
CTTCACGCCATCAGTCGCGCAGAGAGACAATGCAAACAGAGCTGACAGAG
CAAATGAAAGGGCGAACGCTGTTGAGGACGCAAGGGTCAGAAACAATCCT
AGAACCCAACCACCCGAAGCCCGCATAGGCGCTGCCGCCTTCAGAGAGGA
CATTGCTCGAAACAAGGGCGACAGAATTGATGGCGAGTTCATCGTGCAAC
TTAATGGCGACTGTGACGGCAGATGTCGAGGAAAAATTCAGAGCTCCATC
AACGCAGACGCCGCAACGAGAGGCTGTACCATTGGCAAGAGACAAATCAA
GATTGGCGGTTTGAGATTCGTCAATCTCAAATGCCCGGAGGGAAGAAACT
TGCGACGGGATAAAGTTGACTCCGCCATTAGACCTTCTTTGAACTCGCGC
GACGCGGCACAGATTTCTCTCGTTGAAGAGGACTTTGTCGTCACTCTTGA
CGGAGTGTCCACCAGTTTGTGGGGCGTGGATGAGGCAGATGGTGGAGTAA
CTGTGCAGGGTGGTTCCGCCATCAGAGACAGTATGAGAACGTGCAGTGAC
ACCAGCAATAACGGTCAAGGGGTGGATGTGTGGATTCTTGACACCGGTTG
TGCTCCCACCTTCGGAGGGAAATGCTTTGGATATTTTGGTGGCTCGTGTT
TCGATGGAAACGGTCACGGAAGTCATGTAGGCGGAACAGCCACGGACGCC
CTGTACGGTGTGGCCCCCCAAGCACGAAAGAATTGTGTGAAGGTGCTAAA
CGACAGGGGATCAGGATCGTACTTCATCGCAATCCAGGCAATTGAGTATG
TGCTCAACAACAAAGGACCTAACGGCAACATCATTAACTTTTCACTTAGC
GGGCCATCTTACCTCCCTTTGAACAACGCCGTAGAAGCCGCTGCTGCCGA
AGGAGTTTATTTCACTCTGGCTGCCGGTAATGCAGCGCAGCCCGTTTGTG
GCTTTTCACCCGCGTCTGCAGTCAGTGAGAGAGTATTCGCCGTTCAAGCA
CATGACGTGTCAGCGGCTGCTGCTTGGTTCACCAATTACTCCACCGCGAG
TGAAGACTGTACTCACCTCTCTGCACCAGGTGTCGCCATCACATCTTTCG
GGGGAACGGTTTCGGGAACTTCAATGGCCGCTCCCCATGTCGCTGGAGCT
ATAGCCTTGTTGATCTCGGACAACAGAGATCCGACACTCGACACATTAAC
TGCGAATGGTGTCAGTATTGCACCCGGCGGAGTTGCCTTGAGCAAGTCCT
CTTTGGGTCTAGCTTGTACATAA