Ggra1300.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1300.t1
Unique NameGgra1300.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:73823..74644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1300Ggra1300Gracilaria gracilis GNS1m malegenetig00000235_pilon 73823..74644 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1300.t1.start1Ggra1300.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 73823..73825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1300.t1.CDS1Ggra1300.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 73823..74644 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1300.t1.exon1Ggra1300.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 73823..74644 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1300.t1.stop1Ggra1300.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 74642..74644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1300.t1Ggra1300.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 73823..74644 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1300.t1 ID=Ggra1300.t1|Name=Ggra1300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=274bp
MYTSRTLLALFFLSLLYRARSAPVPVAIGGGDGGNGGDGGAGGSGGRGGD
GILIAENSMGGNGGDGGDGGSAGANDPLGGEGGNGGNGLVIVGTAAAVPI
NSGVGGDGGDGGTGGVSFAGFGGPGGPGGDGGTGIVGGDGGTGGLGGTGV
APGAGGPGGDGGDGSFAIALGSSNPAVALVPIAASSSSDSSPELGIASFG
AAPAPAAAPAPAVLVVGTGGDGGDGGPGRPDGVPGAPGAPGLPPGALSDA
AAGRRKQVLESFLATGTVFPPAF*
back to top

spliced messenger RNA

>Ggra1300.t1 ID=Ggra1300.t1|Name=Ggra1300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000235_pilon:73823..74644+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACATCGCGCACCCTTCTCGCACTTTTCTTCCTCTCCCTGTTATA
CCGCGCACGGAGCGCCCCCGTCCCAGTCGCCATCGGAGGCGGTGACGGAG
GCAACGGCGGTGACGGCGGAGCAGGCGGTTCCGGAGGACGCGGCGGAGAT
GGAATTCTAATCGCCGAAAACAGCATGGGAGGAAACGGAGGAGACGGAGG
AGATGGAGGCTCCGCCGGCGCGAACGATCCGCTAGGCGGAGAGGGCGGCA
ATGGAGGAAATGGTCTCGTCATCGTCGGCACTGCTGCCGCCGTCCCAATC
AACTCTGGAGTGGGAGGAGACGGCGGTGACGGCGGCACAGGCGGCGTTTC
CTTCGCCGGCTTTGGCGGTCCAGGAGGCCCCGGAGGAGATGGAGGAACAG
GTATCGTTGGAGGAGATGGCGGAACCGGCGGCCTTGGCGGAACCGGCGTT
GCACCGGGCGCTGGTGGCCCCGGTGGCGACGGCGGTGATGGATCGTTTGC
CATTGCGCTTGGTTCGAGTAACCCTGCCGTCGCACTGGTTCCGATCGCCG
CGTCGAGCAGTAGTGACTCTAGCCCGGAATTAGGCATTGCATCCTTCGGT
gccgcgcctgcgcctgcggccgcgcctgcgcctgcCGTGCTTGTTGTCGG
AACTGGAGGCGATGGAGGTGATGGAGGACCAGGACGTCCGGATGGTGTTC
CTGGCGCTCCGGGTGCTCCTGGCTTGCCGCCAGGTGCTCTGTCTGACGCT
GCTGCTGGAAGGCGTAAACAGGTGCTGGAGAGCTTCTTGGCTACAGGAAC
TGTGTTCCCGCCCGCGTTCTAA
back to top

protein sequence of Ggra1300.t1

>Ggra1300.t1 ID=Ggra1300.t1|Name=Ggra1300.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MYTSRTLLALFFLSLLYRARSAPVPVAIGGGDGGNGGDGGAGGSGGRGGD
GILIAENSMGGNGGDGGDGGSAGANDPLGGEGGNGGNGLVIVGTAAAVPI
NSGVGGDGGDGGTGGVSFAGFGGPGGPGGDGGTGIVGGDGGTGGLGGTGV
APGAGGPGGDGGDGSFAIALGSSNPAVALVPIAASSSSDSSPELGIASFG
AAPAPAAAPAPAVLVVGTGGDGGDGGPGRPDGVPGAPGAPGLPPGALSDA
AAGRRKQVLESFLATGTVFPPAF*
back to top

mRNA from alignment at tig00000235_pilon:73823..74644+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1300.t1 ID=Ggra1300.t1|Name=Ggra1300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000235_pilon:73823..74644+ (Gracilaria gracilis GNS1m male)
ATGTACACATCGCGCACCCTTCTCGCACTTTTCTTCCTCTCCCTGTTATA
CCGCGCACGGAGCGCCCCCGTCCCAGTCGCCATCGGAGGCGGTGACGGAG
GCAACGGCGGTGACGGCGGAGCAGGCGGTTCCGGAGGACGCGGCGGAGAT
GGAATTCTAATCGCCGAAAACAGCATGGGAGGAAACGGAGGAGACGGAGG
AGATGGAGGCTCCGCCGGCGCGAACGATCCGCTAGGCGGAGAGGGCGGCA
ATGGAGGAAATGGTCTCGTCATCGTCGGCACTGCTGCCGCCGTCCCAATC
AACTCTGGAGTGGGAGGAGACGGCGGTGACGGCGGCACAGGCGGCGTTTC
CTTCGCCGGCTTTGGCGGTCCAGGAGGCCCCGGAGGAGATGGAGGAACAG
GTATCGTTGGAGGAGATGGCGGAACCGGCGGCCTTGGCGGAACCGGCGTT
GCACCGGGCGCTGGTGGCCCCGGTGGCGACGGCGGTGATGGATCGTTTGC
CATTGCGCTTGGTTCGAGTAACCCTGCCGTCGCACTGGTTCCGATCGCCG
CGTCGAGCAGTAGTGACTCTAGCCCGGAATTAGGCATTGCATCCTTCGGT
gccgcgcctgcgcctgcggccgcgcctgcgcctgcCGTGCTTGTTGTCGG
AACTGGAGGCGATGGAGGTGATGGAGGACCAGGACGTCCGGATGGTGTTC
CTGGCGCTCCGGGTGCTCCTGGCTTGCCGCCAGGTGCTCTGTCTGACGCT
GCTGCTGGAAGGCGTAAACAGGTGCTGGAGAGCTTCTTGGCTACAGGAAC
TGTGTTCCCGCCCGCGTTCTAA
back to top

Coding sequence (CDS) from alignment at tig00000235_pilon:73823..74644+

>Ggra1300.t1 ID=Ggra1300.t1|Name=Ggra1300.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000235_pilon:73823..74644+ (Gracilaria gracilis GNS1m male)
ATGTACACATCGCGCACCCTTCTCGCACTTTTCTTCCTCTCCCTGTTATA
CCGCGCACGGAGCGCCCCCGTCCCAGTCGCCATCGGAGGCGGTGACGGAG
GCAACGGCGGTGACGGCGGAGCAGGCGGTTCCGGAGGACGCGGCGGAGAT
GGAATTCTAATCGCCGAAAACAGCATGGGAGGAAACGGAGGAGACGGAGG
AGATGGAGGCTCCGCCGGCGCGAACGATCCGCTAGGCGGAGAGGGCGGCA
ATGGAGGAAATGGTCTCGTCATCGTCGGCACTGCTGCCGCCGTCCCAATC
AACTCTGGAGTGGGAGGAGACGGCGGTGACGGCGGCACAGGCGGCGTTTC
CTTCGCCGGCTTTGGCGGTCCAGGAGGCCCCGGAGGAGATGGAGGAACAG
GTATCGTTGGAGGAGATGGCGGAACCGGCGGCCTTGGCGGAACCGGCGTT
GCACCGGGCGCTGGTGGCCCCGGTGGCGACGGCGGTGATGGATCGTTTGC
CATTGCGCTTGGTTCGAGTAACCCTGCCGTCGCACTGGTTCCGATCGCCG
CGTCGAGCAGTAGTGACTCTAGCCCGGAATTAGGCATTGCATCCTTCGGT
gccgcgcctgcgcctgcggccgcgcctgcgcctgcCGTGCTTGTTGTCGG
AACTGGAGGCGATGGAGGTGATGGAGGACCAGGACGTCCGGATGGTGTTC
CTGGCGCTCCGGGTGCTCCTGGCTTGCCGCCAGGTGCTCTGTCTGACGCT
GCTGCTGGAAGGCGTAAACAGGTGCTGGAGAGCTTCTTGGCTACAGGAAC
TGTGTTCCCGCCCGCGTTCTAA
back to top