Ggra1298.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1298.t1
Unique NameGgra1298.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:70641..71288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1183438.GKIL_3401
Max annot lvl1117|Cyanobacteria
Evalue2.3e-12
EggNOG OGs2AETM@1|root,314QQ@2|Bacteria,1G6R9@1117|Cyanobacteria
DescriptionAlternative locus ID
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1298Ggra1298Gracilaria gracilis GNS1m malegenetig00000235_pilon 70641..71288 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1298.t1.start1Ggra1298.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 70641..70643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1298.t1.CDS1Ggra1298.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 70641..71288 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1298.t1.exon1Ggra1298.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 70641..71288 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1298.t1.stop1Ggra1298.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 71286..71288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1298.t1Ggra1298.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 70641..71288 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1298.t1 ID=Ggra1298.t1|Name=Ggra1298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MLTLFVSPTSIRLISRPALSLQTFRTASRMTLDLPTIRAARFPATVDHSA
ELLGVQKPSQPANIPLVKELLQTADGARGVLVTVLSNPHVPHCDEPLDEQ
FASLVKELACTDDDVGADLRKLLVTNVVMPNAMVVFYRQRGEAELLKASE
LTARRAVSLLKVVSENEMVKQVANQFVRGLRQDQGPFGAFATKWGYGEAQ
REQAIKGIASAIEGI*
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spliced messenger RNA

>Ggra1298.t1 ID=Ggra1298.t1|Name=Ggra1298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000235_pilon:70641..71288+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAACGCTCTTTGTCTCACCGACATCCATCCGTCTTATTAGCCGTCC
AGCTCTATCTTTGCAAACGTTCCGCACCGCGTCACGCATGACATTAGATC
TTCCAACAATCCGAGCAGCTCGTTTCCCAGCCACGGTCGACCATTCGGCC
GAGCTGCTCGGCGTGCAGAAACCATCGCAACCGGCGAACATTCCACTGGT
AAAAGAGCTCTTGCAAACGGCCGATGGCGCGCGTGGAGTGTTAGTCACCG
TGCTTTCCAACCCGCACGTTCCGCATTGTGATGAGCCTCTTGATGAGCAG
TTCGCCTCACTTGTGAAGGAGCTTGCTTGCACAGATGATGATGTGGGAGC
CGATTTGCGAAAGTTGCTGGTGACCAATGTTGTCATGCCGAATGCAATGG
TGGTGTTTTATAGACAGCGTGGAGAAGCGGAGCTATTGAAAGCAAGCGAG
CTCACTGCCAGACGAGCAGTGAGTTTGCTAAAAGTGGTCTCTGAGAACGA
GATGGTCAAACAGGTTGCAAACCAGTTTGTCAGGGGACTACGACAAGATC
AAGGTCCGTTTGGTGCGTTTGCAACCAAATGGGGCTACGGCGAAGCGCAA
CGAGAACAGGCTATCAAAGGTATCGCATCCGCTATAGAGGGCATTTGA
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protein sequence of Ggra1298.t1

>Ggra1298.t1 ID=Ggra1298.t1|Name=Ggra1298.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MLTLFVSPTSIRLISRPALSLQTFRTASRMTLDLPTIRAARFPATVDHSA
ELLGVQKPSQPANIPLVKELLQTADGARGVLVTVLSNPHVPHCDEPLDEQ
FASLVKELACTDDDVGADLRKLLVTNVVMPNAMVVFYRQRGEAELLKASE
LTARRAVSLLKVVSENEMVKQVANQFVRGLRQDQGPFGAFATKWGYGEAQ
REQAIKGIASAIEGI*
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mRNA from alignment at tig00000235_pilon:70641..71288+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1298.t1 ID=Ggra1298.t1|Name=Ggra1298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000235_pilon:70641..71288+ (Gracilaria gracilis GNS1m male)
ATGCTAACGCTCTTTGTCTCACCGACATCCATCCGTCTTATTAGCCGTCC
AGCTCTATCTTTGCAAACGTTCCGCACCGCGTCACGCATGACATTAGATC
TTCCAACAATCCGAGCAGCTCGTTTCCCAGCCACGGTCGACCATTCGGCC
GAGCTGCTCGGCGTGCAGAAACCATCGCAACCGGCGAACATTCCACTGGT
AAAAGAGCTCTTGCAAACGGCCGATGGCGCGCGTGGAGTGTTAGTCACCG
TGCTTTCCAACCCGCACGTTCCGCATTGTGATGAGCCTCTTGATGAGCAG
TTCGCCTCACTTGTGAAGGAGCTTGCTTGCACAGATGATGATGTGGGAGC
CGATTTGCGAAAGTTGCTGGTGACCAATGTTGTCATGCCGAATGCAATGG
TGGTGTTTTATAGACAGCGTGGAGAAGCGGAGCTATTGAAAGCAAGCGAG
CTCACTGCCAGACGAGCAGTGAGTTTGCTAAAAGTGGTCTCTGAGAACGA
GATGGTCAAACAGGTTGCAAACCAGTTTGTCAGGGGACTACGACAAGATC
AAGGTCCGTTTGGTGCGTTTGCAACCAAATGGGGCTACGGCGAAGCGCAA
CGAGAACAGGCTATCAAAGGTATCGCATCCGCTATAGAGGGCATTTGA
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Coding sequence (CDS) from alignment at tig00000235_pilon:70641..71288+

>Ggra1298.t1 ID=Ggra1298.t1|Name=Ggra1298.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000235_pilon:70641..71288+ (Gracilaria gracilis GNS1m male)
ATGCTAACGCTCTTTGTCTCACCGACATCCATCCGTCTTATTAGCCGTCC
AGCTCTATCTTTGCAAACGTTCCGCACCGCGTCACGCATGACATTAGATC
TTCCAACAATCCGAGCAGCTCGTTTCCCAGCCACGGTCGACCATTCGGCC
GAGCTGCTCGGCGTGCAGAAACCATCGCAACCGGCGAACATTCCACTGGT
AAAAGAGCTCTTGCAAACGGCCGATGGCGCGCGTGGAGTGTTAGTCACCG
TGCTTTCCAACCCGCACGTTCCGCATTGTGATGAGCCTCTTGATGAGCAG
TTCGCCTCACTTGTGAAGGAGCTTGCTTGCACAGATGATGATGTGGGAGC
CGATTTGCGAAAGTTGCTGGTGACCAATGTTGTCATGCCGAATGCAATGG
TGGTGTTTTATAGACAGCGTGGAGAAGCGGAGCTATTGAAAGCAAGCGAG
CTCACTGCCAGACGAGCAGTGAGTTTGCTAAAAGTGGTCTCTGAGAACGA
GATGGTCAAACAGGTTGCAAACCAGTTTGTCAGGGGACTACGACAAGATC
AAGGTCCGTTTGGTGCGTTTGCAACCAAATGGGGCTACGGCGAAGCGCAA
CGAGAACAGGCTATCAAAGGTATCGCATCCGCTATAGAGGGCATTTGA
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