Ggra1293.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1293.t1
Unique NameGgra1293.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:51883..52479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1293Ggra1293Gracilaria gracilis GNS1m malegenetig00000235_pilon 51883..52479 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1293.t1.stop1Ggra1293.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 51883..51885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1293.t1.CDS1Ggra1293.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 51883..52479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1293.t1.exon1Ggra1293.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 51883..52479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1293.t1.start1Ggra1293.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 52477..52479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1293.t1Ggra1293.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 51883..52479 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1293.t1 ID=Ggra1293.t1|Name=Ggra1293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MCVAAPARSRTTARQQYTNYAVGGNGGRGGNGGNGARGGNGGNGGNAFAL
GANVVGGNGGGGGNGGAGSVGGRPGQGGTSFSTFGVNGADGKPGVSTSFG
FGTNGANGADGKFGGSGGSGGNGGSAFVFSGGNTGNGAGANLQAQAALNS
ANAAVQAANQAANQALNFGNQFRPPQFTFPRLHYVWNPYLHRYVPQYW*
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spliced messenger RNA

>Ggra1293.t1 ID=Ggra1293.t1|Name=Ggra1293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000235_pilon:51883..52479- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTCGCCGCGCCCGCCCGCAGCCGCACCACCGCGCGACAGCAGTA
CACAAATTACGCCGTGGGAGGTAACGGCGGACGAGGCGGCAACGGAGGAA
ATGGTGCCCGTGGTGGCAACGGCGGCAACGGTGGCAACGCCTTCGCACTC
GGAGCAAACGTGGTGGGCGGAAATGGCGGAGGTGGAGGAAACGGAGGCGC
TGGCTCCGTTGGAGGTCGCCCAGGACAAGGAGGAACGTCCTTCTCTACGT
TTGGTGTGAACGGAGCCGACGGTAAACCTGGTGTGTCCACGTCGTTCGGC
TTCGGTACTAACGGAGCAAACGGCGCGGACGGCAAGTTTGGAGGCAGCGG
CGGTAGTGGAGGTAACGGAGGCAGCGCGTTCGTGTTTAGCGGCGGAAATA
CGGGTAACGGCGCGGGAGCTAACTTGCAAGCGCAAGCAGCTCTTAACAGC
GCTAATGCTGCGGTTCAAGCAGCTAATCAGGCAGCTAATCAGGCGCTCAA
CTTTGGCAACCAATTCAGACCGCCGCAGTTTACTTTCCCAAGATTACATT
ACGTATGGAATCCTTACCTGCATAGGTATGTGCCACAATACTGGTGA
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protein sequence of Ggra1293.t1

>Ggra1293.t1 ID=Ggra1293.t1|Name=Ggra1293.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MCVAAPARSRTTARQQYTNYAVGGNGGRGGNGGNGARGGNGGNGGNAFAL
GANVVGGNGGGGGNGGAGSVGGRPGQGGTSFSTFGVNGADGKPGVSTSFG
FGTNGANGADGKFGGSGGSGGNGGSAFVFSGGNTGNGAGANLQAQAALNS
ANAAVQAANQAANQALNFGNQFRPPQFTFPRLHYVWNPYLHRYVPQYW*
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mRNA from alignment at tig00000235_pilon:51883..52479-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1293.t1 ID=Ggra1293.t1|Name=Ggra1293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000235_pilon:51883..52479- (Gracilaria gracilis GNS1m male)
ATGTGTGTCGCCGCGCCCGCCCGCAGCCGCACCACCGCGCGACAGCAGTA
CACAAATTACGCCGTGGGAGGTAACGGCGGACGAGGCGGCAACGGAGGAA
ATGGTGCCCGTGGTGGCAACGGCGGCAACGGTGGCAACGCCTTCGCACTC
GGAGCAAACGTGGTGGGCGGAAATGGCGGAGGTGGAGGAAACGGAGGCGC
TGGCTCCGTTGGAGGTCGCCCAGGACAAGGAGGAACGTCCTTCTCTACGT
TTGGTGTGAACGGAGCCGACGGTAAACCTGGTGTGTCCACGTCGTTCGGC
TTCGGTACTAACGGAGCAAACGGCGCGGACGGCAAGTTTGGAGGCAGCGG
CGGTAGTGGAGGTAACGGAGGCAGCGCGTTCGTGTTTAGCGGCGGAAATA
CGGGTAACGGCGCGGGAGCTAACTTGCAAGCGCAAGCAGCTCTTAACAGC
GCTAATGCTGCGGTTCAAGCAGCTAATCAGGCAGCTAATCAGGCGCTCAA
CTTTGGCAACCAATTCAGACCGCCGCAGTTTACTTTCCCAAGATTACATT
ACGTATGGAATCCTTACCTGCATAGGTATGTGCCACAATACTGGTGA
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Coding sequence (CDS) from alignment at tig00000235_pilon:51883..52479-

>Ggra1293.t1 ID=Ggra1293.t1|Name=Ggra1293.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000235_pilon:51883..52479- (Gracilaria gracilis GNS1m male)
ATGTGTGTCGCCGCGCCCGCCCGCAGCCGCACCACCGCGCGACAGCAGTA
CACAAATTACGCCGTGGGAGGTAACGGCGGACGAGGCGGCAACGGAGGAA
ATGGTGCCCGTGGTGGCAACGGCGGCAACGGTGGCAACGCCTTCGCACTC
GGAGCAAACGTGGTGGGCGGAAATGGCGGAGGTGGAGGAAACGGAGGCGC
TGGCTCCGTTGGAGGTCGCCCAGGACAAGGAGGAACGTCCTTCTCTACGT
TTGGTGTGAACGGAGCCGACGGTAAACCTGGTGTGTCCACGTCGTTCGGC
TTCGGTACTAACGGAGCAAACGGCGCGGACGGCAAGTTTGGAGGCAGCGG
CGGTAGTGGAGGTAACGGAGGCAGCGCGTTCGTGTTTAGCGGCGGAAATA
CGGGTAACGGCGCGGGAGCTAACTTGCAAGCGCAAGCAGCTCTTAACAGC
GCTAATGCTGCGGTTCAAGCAGCTAATCAGGCAGCTAATCAGGCGCTCAA
CTTTGGCAACCAATTCAGACCGCCGCAGTTTACTTTCCCAAGATTACATT
ACGTATGGAATCCTTACCTGCATAGGTATGTGCCACAATACTGGTGA
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