Ggra1292.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1292.t1
Unique NameGgra1292.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:49281..50147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1292Ggra1292Gracilaria gracilis GNS1m malegenetig00000235_pilon 49281..50147 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1292.t1.stop1Ggra1292.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 49281..49283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1292.t1.CDS1Ggra1292.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 49281..50147 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1292.t1.exon1Ggra1292.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 49281..50147 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1292.t1.start1Ggra1292.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 50145..50147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1292.t1Ggra1292.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 49281..50147 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1292.t1 ID=Ggra1292.t1|Name=Ggra1292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MKLTAAIALSVAVLTQAAVVPQNIGSVVRQEDLVAPPGVPQFGGNGGNGG
SGTVEGPGSVGGNGGNGGLGGEGFFGGGIGGNGGNGFLNGAGGSGGNGGL
GGEGGNAIATGDGGDGGDGGSGAAIGAGVVGGEGGAGGNGGLAGILFGNG
GNGGNGGAGGVLGDGAVGGNGGAGGFGADAGIFGGDGGNGGNGGLGFAEG
AGAVGGNAGDGGDGGNSEAGNGGNGGNGGFGTVNGDGAVGGNGGNGGSGG
FGLISGGNGGSGGNGFASGNGAVGGNGGAGGDAGSVIV*
back to top

spliced messenger RNA

>Ggra1292.t1 ID=Ggra1292.t1|Name=Ggra1292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000235_pilon:49281..50147- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTACCGCCGCGATCGCGCTCTCTGTTGCCGTGCTTACCCAAGC
CGCCGTCGTCCCCCAGAACATTGGCTCCGTCGTGCGCCAAGAGGACCTCG
TGGCGCCGCCTGGTGTCCCTCAGTTCGGAGGAAATGGTGGTAACGGTGGT
TCCGGTACCGTCGAAGGCCCCGGATCCGTCGGAGGTAACGGAGGTAACGG
CGGTCTCGGAGGAGAAGGCTTCTTCGGAGGCGGCATCGGTGGAAACGGTG
GAAACGGTTTCTTGAACGGCGCCGGAGGATCTGGCGGTAACGGTGGTCTC
GGTGGCGAAGGTGGAAACGCTATTGCCACTGGCGACGGTGGTGATGGTGG
TGACGGTGGTAGCGGTGCGGCCATCGGCGCTGGCGTTGTCGGCGGTGAAG
GTGGCGCCGGTGGAAACGGTGGCCTCGCTGGCATTCTGTTCGGCAACGGT
GGTAACGGCGGTAACGGAGGCGCCGGTGGTGTGCTCGGAGATGGTGCCGT
TGGCGGAAACGGTGGCGCTGGAGGCTTCGGTGCCGACGCCGGTATCTTCG
GTGGCGATGGTGGAAACGGTGGAAACGGTGGACTTGGTTTCGCTGAGGGA
GCTGGTGCCGTGGGCGGCAACGCCGGTGACGGTGGAGATGGTGGCAACTC
TGAGGCTGGCAATGGTGGAAACGGTGGTAATGGTGGGTTCGGTACTGTGA
ACGGCGATGGTGCTGTTGGCGGTAACGGTGGAAACGGTGGAAGTGGCGGG
TTCGGTCTCATCTCCGGCGGCAATGGAGGAAGCGGCGGCAACGGTTTCGC
CTCAGGGAATGGAGCTGTTGGCGGCAATGGTGGAGCTGGTGGTGACGCCG
GATCAGTGATTGTGTAA
back to top

protein sequence of Ggra1292.t1

>Ggra1292.t1 ID=Ggra1292.t1|Name=Ggra1292.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MKLTAAIALSVAVLTQAAVVPQNIGSVVRQEDLVAPPGVPQFGGNGGNGG
SGTVEGPGSVGGNGGNGGLGGEGFFGGGIGGNGGNGFLNGAGGSGGNGGL
GGEGGNAIATGDGGDGGDGGSGAAIGAGVVGGEGGAGGNGGLAGILFGNG
GNGGNGGAGGVLGDGAVGGNGGAGGFGADAGIFGGDGGNGGNGGLGFAEG
AGAVGGNAGDGGDGGNSEAGNGGNGGNGGFGTVNGDGAVGGNGGNGGSGG
FGLISGGNGGSGGNGFASGNGAVGGNGGAGGDAGSVIV*
back to top

mRNA from alignment at tig00000235_pilon:49281..50147-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1292.t1 ID=Ggra1292.t1|Name=Ggra1292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000235_pilon:49281..50147- (Gracilaria gracilis GNS1m male)
ATGAAGCTTACCGCCGCGATCGCGCTCTCTGTTGCCGTGCTTACCCAAGC
CGCCGTCGTCCCCCAGAACATTGGCTCCGTCGTGCGCCAAGAGGACCTCG
TGGCGCCGCCTGGTGTCCCTCAGTTCGGAGGAAATGGTGGTAACGGTGGT
TCCGGTACCGTCGAAGGCCCCGGATCCGTCGGAGGTAACGGAGGTAACGG
CGGTCTCGGAGGAGAAGGCTTCTTCGGAGGCGGCATCGGTGGAAACGGTG
GAAACGGTTTCTTGAACGGCGCCGGAGGATCTGGCGGTAACGGTGGTCTC
GGTGGCGAAGGTGGAAACGCTATTGCCACTGGCGACGGTGGTGATGGTGG
TGACGGTGGTAGCGGTGCGGCCATCGGCGCTGGCGTTGTCGGCGGTGAAG
GTGGCGCCGGTGGAAACGGTGGCCTCGCTGGCATTCTGTTCGGCAACGGT
GGTAACGGCGGTAACGGAGGCGCCGGTGGTGTGCTCGGAGATGGTGCCGT
TGGCGGAAACGGTGGCGCTGGAGGCTTCGGTGCCGACGCCGGTATCTTCG
GTGGCGATGGTGGAAACGGTGGAAACGGTGGACTTGGTTTCGCTGAGGGA
GCTGGTGCCGTGGGCGGCAACGCCGGTGACGGTGGAGATGGTGGCAACTC
TGAGGCTGGCAATGGTGGAAACGGTGGTAATGGTGGGTTCGGTACTGTGA
ACGGCGATGGTGCTGTTGGCGGTAACGGTGGAAACGGTGGAAGTGGCGGG
TTCGGTCTCATCTCCGGCGGCAATGGAGGAAGCGGCGGCAACGGTTTCGC
CTCAGGGAATGGAGCTGTTGGCGGCAATGGTGGAGCTGGTGGTGACGCCG
GATCAGTGATTGTGTAA
back to top

Coding sequence (CDS) from alignment at tig00000235_pilon:49281..50147-

>Ggra1292.t1 ID=Ggra1292.t1|Name=Ggra1292.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000235_pilon:49281..50147- (Gracilaria gracilis GNS1m male)
ATGAAGCTTACCGCCGCGATCGCGCTCTCTGTTGCCGTGCTTACCCAAGC
CGCCGTCGTCCCCCAGAACATTGGCTCCGTCGTGCGCCAAGAGGACCTCG
TGGCGCCGCCTGGTGTCCCTCAGTTCGGAGGAAATGGTGGTAACGGTGGT
TCCGGTACCGTCGAAGGCCCCGGATCCGTCGGAGGTAACGGAGGTAACGG
CGGTCTCGGAGGAGAAGGCTTCTTCGGAGGCGGCATCGGTGGAAACGGTG
GAAACGGTTTCTTGAACGGCGCCGGAGGATCTGGCGGTAACGGTGGTCTC
GGTGGCGAAGGTGGAAACGCTATTGCCACTGGCGACGGTGGTGATGGTGG
TGACGGTGGTAGCGGTGCGGCCATCGGCGCTGGCGTTGTCGGCGGTGAAG
GTGGCGCCGGTGGAAACGGTGGCCTCGCTGGCATTCTGTTCGGCAACGGT
GGTAACGGCGGTAACGGAGGCGCCGGTGGTGTGCTCGGAGATGGTGCCGT
TGGCGGAAACGGTGGCGCTGGAGGCTTCGGTGCCGACGCCGGTATCTTCG
GTGGCGATGGTGGAAACGGTGGAAACGGTGGACTTGGTTTCGCTGAGGGA
GCTGGTGCCGTGGGCGGCAACGCCGGTGACGGTGGAGATGGTGGCAACTC
TGAGGCTGGCAATGGTGGAAACGGTGGTAATGGTGGGTTCGGTACTGTGA
ACGGCGATGGTGCTGTTGGCGGTAACGGTGGAAACGGTGGAAGTGGCGGG
TTCGGTCTCATCTCCGGCGGCAATGGAGGAAGCGGCGGCAACGGTTTCGC
CTCAGGGAATGGAGCTGTTGGCGGCAATGGTGGAGCTGGTGGTGACGCCG
GATCAGTGATTGTGTAA
back to top