Ggra1291.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1291.t1
Unique NameGgra1291.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:44746..45513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005111323.1
PFAMsKunitz_BPTI,WAP
Max annot lvl33208|Metazoa
Evalue1.85e-12
EggNOG OGsKOG3538@1|root,KOG4597@2759|Eukaryota,38EQB@33154|Opisthokonta,3BB8S@33208|Metazoa
Descriptionserine-type endopeptidase inhibitor activity
COG categoryOT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1291Ggra1291Gracilaria gracilis GNS1m malegenetig00000235_pilon 44746..45513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1291.t1Ggra1291.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 44746..45513 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1291.t1.stop1Ggra1291.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 44746..44748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1291.t1.CDS1Ggra1291.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 44746..44853 -
Ggra1291.t1.CDS2Ggra1291.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000235_pilon 44923..45273 -
Ggra1291.t1.CDS3Ggra1291.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000235_pilon 45337..45513 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1291.t1.exon1Ggra1291.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 44746..44853 -
Ggra1291.t1.exon2Ggra1291.t1.exon2Gracilaria gracilis GNS1m maleexontig00000235_pilon 44923..45273 -
Ggra1291.t1.exon3Ggra1291.t1.exon3Gracilaria gracilis GNS1m maleexontig00000235_pilon 45337..45513 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1291.t1.intron1Ggra1291.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000235_pilon 44854..44922 -
Ggra1291.t1.intron2Ggra1291.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000235_pilon 45274..45336 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1291.t1.start1Ggra1291.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 45511..45513 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1291.t1 ID=Ggra1291.t1|Name=Ggra1291.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MVLSYISLLATFGLLAAKEFPTRGGAFALTSQCNLAPPPSSVPTCRKKVV
GWWYDPQMETCTTSESCQEAPFTALNECLAACRPNLCLQKPETGPCRART
IGFYFQRGRCKPFVWGGCRGNVPFWSLSECQYRCENKPRATFLGFDHRCS
LQSERSAICLTGKMVMEAFFYNHYRLTCEKGIWKGCSASEPFFSLRECNS
ACIPQSLLPPN*
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spliced messenger RNA

>Ggra1291.t1 ID=Ggra1291.t1|Name=Ggra1291.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000235_pilon:44746..45513- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGTCGTACATTTCTCTCTTGGCAACCTTTGGCTTGCTTGCTGC
TAAGGAATTCCCAACCCGTGGAGGCGCATTCGCTCTCACAAGCCAATGCA
ACCTTGCGCCTCCACCATCATCTGTTCCTACCTGCCGGAAAAAAGTTGTT
GGTTGGTGGTATGACCCACAGATGGAGACATGTACAACATCGGAGTCATG
CCAGGAGGCCCCATTCACTGCTCTTAACGAATGTCTCGCTGCATGTCGTC
CAAATCTATGCCTTCAAAAACCAGAGACTGGACCTTGCCGAGCGAGAACG
ATTGGCTTTTACTTTCAACGTGGTCGTTGTAAACCTTTTGTTTGGGGTGG
CTGCCGTGGAAATGTTCCATTTTGGTCACTCTCGGAATGTCAATATCGTT
GTGAGAACAAACCTCGTGCAACCTTCCTAGGCTTCGACCATCGTTGTAGC
TTACAATCAGAACGTTCTGCGATTTGTCTCACTGGCAAGATGGTTATGGA
GGCCTTCTTTTACAACCACTATCGTCTGACATGCGAGAAGGGTATCTGGA
AGGGCTGCAGTGCATCAGAACCGTTCTTTAGCTTAAGGGAGTGTAACAGC
GCCTGTATACCGCAGTCTTTGTTGCCGCCAAACTAG
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protein sequence of Ggra1291.t1

>Ggra1291.t1 ID=Ggra1291.t1|Name=Ggra1291.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MVLSYISLLATFGLLAAKEFPTRGGAFALTSQCNLAPPPSSVPTCRKKVV
GWWYDPQMETCTTSESCQEAPFTALNECLAACRPNLCLQKPETGPCRART
IGFYFQRGRCKPFVWGGCRGNVPFWSLSECQYRCENKPRATFLGFDHRCS
LQSERSAICLTGKMVMEAFFYNHYRLTCEKGIWKGCSASEPFFSLRECNS
ACIPQSLLPPN*
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mRNA from alignment at tig00000235_pilon:44746..45513-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1291.t1 ID=Ggra1291.t1|Name=Ggra1291.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000235_pilon:44746..45513- (Gracilaria gracilis GNS1m male)
ATGGTGCTGTCGTACATTTCTCTCTTGGCAACCTTTGGCTTGCTTGCTGC
TAAGGAATTCCCAACCCGTGGAGGCGCATTCGCTCTCACAAGCCAATGCA
ACCTTGCGCCTCCACCATCATCTGTTCCTACCTGCCGGAAAAAAGTTGTT
GGTTGGTGGTATGACCCACAGATGGAGGTATGTTTCGCTTTTCATCACGT
TTTGAAAGCTTAGTGCTCGTACTGACCGTAATACATGCAGACATGTACAA
CATCGGAGTCATGCCAGGAGGCCCCATTCACTGCTCTTAACGAATGTCTC
GCTGCATGTCGTCCAAATCTATGCCTTCAAAAACCAGAGACTGGACCTTG
CCGAGCGAGAACGATTGGCTTTTACTTTCAACGTGGTCGTTGTAAACCTT
TTGTTTGGGGTGGCTGCCGTGGAAATGTTCCATTTTGGTCACTCTCGGAA
TGTCAATATCGTTGTGAGAACAAACCTCGTGCAACCTTCCTAGGCTTCGA
CCATCGTTGTAGCTTACAATCAGAACGTTCTGCGATTTGTCTCACTGGCA
AGATGGTTATGGAGGCCTTCTTTTACAACCACTATCGTCTGGTACGTCCT
TTTCTTTTGCATTTGTCTGAGTCTTGGCGATTGTGATGTTTGTACTAACA
CCCGTTCCAGACATGCGAGAAGGGTATCTGGAAGGGCTGCAGTGCATCAG
AACCGTTCTTTAGCTTAAGGGAGTGTAACAGCGCCTGTATACCGCAGTCT
TTGTTGCCGCCAAACTAG
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Coding sequence (CDS) from alignment at tig00000235_pilon:44746..45513-

>Ggra1291.t1 ID=Ggra1291.t1|Name=Ggra1291.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000235_pilon:44746..45513- (Gracilaria gracilis GNS1m male)
ATGGTGCTGTCGTACATTTCTCTCTTGGCAACCTTTGGCTTGCTTGCTGC
TAAGGAATTCCCAACCCGTGGAGGCGCATTCGCTCTCACAAGCCAATGCA
ACCTTGCGCCTCCACCATCATCTGTTCCTACCTGCCGGAAAAAAGTTGTT
GGTTGGTGGTATGACCCACAGATGGAGACATGTACAACATCGGAGTCATG
CCAGGAGGCCCCATTCACTGCTCTTAACGAATGTCTCGCTGCATGTCGTC
CAAATCTATGCCTTCAAAAACCAGAGACTGGACCTTGCCGAGCGAGAACG
ATTGGCTTTTACTTTCAACGTGGTCGTTGTAAACCTTTTGTTTGGGGTGG
CTGCCGTGGAAATGTTCCATTTTGGTCACTCTCGGAATGTCAATATCGTT
GTGAGAACAAACCTCGTGCAACCTTCCTAGGCTTCGACCATCGTTGTAGC
TTACAATCAGAACGTTCTGCGATTTGTCTCACTGGCAAGATGGTTATGGA
GGCCTTCTTTTACAACCACTATCGTCTGACATGCGAGAAGGGTATCTGGA
AGGGCTGCAGTGCATCAGAACCGTTCTTTAGCTTAAGGGAGTGTAACAGC
GCCTGTATACCGCAGTCTTTGTTGCCGCCAAACTAG
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