Ggra1290.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1290.t1
Unique NameGgra1290.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:42890..44077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1290Ggra1290Gracilaria gracilis GNS1m malegenetig00000235_pilon 42890..44077 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1290.t1.stop1Ggra1290.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 42890..42892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1290.t1.CDS1Ggra1290.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 42890..44077 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1290.t1.exon1Ggra1290.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 42890..44077 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1290.t1.start1Ggra1290.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 44075..44077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1290.t1Ggra1290.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 42890..44077 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1290.t1 ID=Ggra1290.t1|Name=Ggra1290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MTFYSAYITSLDHFVAEVFPYEKALGPVCLSEIELGAFHAFENSSLIYGE
IEKLHSIDPQLFYLPESMLSNSELLPFTHDEQSLVDGAWDFTLEALEDPP
SAMVEMIRSVLPPGLKILYDPEAETVCERFLSFKQGIPDYKLVTSNYFIA
DVVAKVIRGYLLGVPSDSCLGILQHAVAFVFNGIRCERVQNEQLKVSLVY
LSFYNEAFRHHTSSKDVSSVPGIPVSLVQDLLDDDIRILSSFHSWGRLEH
IFYDGAAMRKVHISEKLFSNEILENITTSLSVSLPLPFLPSPEPMFEEAM
TQTLQETTYRSTYSCSEAYFAYPSPPATSMGECCADICLDQALYQSVGIS
STSECCGYCNEASCPLDESNPLSQLAPIYLEPYGYVPPTTTPIDI*
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spliced messenger RNA

>Ggra1290.t1 ID=Ggra1290.t1|Name=Ggra1290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000235_pilon:42890..44077- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTTCTATTCTGCCTACATCACCAGTTTGGATCATTTCGTTGCTGA
AGTTTTCCCCTATGAGAAGGCATTGGGACCGGTGTGTTTAAGTGAGATTG
AGCTTGGAGCCTTTCACGCCTTCGAGAACAGTTCATTAATCTACGGTGAA
ATCGAGAAGTTGCACAGTATCGACCCACAACTGTTTTACTTACCGGAAAG
TATGCTTTCAAACTCTGAACTACTCCCTTTTACACATGATGAACAGTCTC
TTGTCGACGGTGCTTGGGACTTCACTTTGGAAGCACTAGAAGATCCGCCT
AGCGCAATGGTGGAAATGATTCGGAGCGTCCTTCCCCCAGGACTCAAAAT
TCTCTATGACCCGGAGGCAGAGACCGTCTGTGAACGTTTTCTTTCTTTCA
AGCAAGGTATTCCGGACTACAAACTTGTAACTTCAAATTATTTCATTGCT
GATGTGGTGGCCAAGGTTATTCGTGGGTATCTCCTAGGAGTTCCTAGCGA
TTCATGTCTCGGTATTCTTCAGCACGCTGTCGCGTTTGTCTTCAACGGAA
TTCGTTGTGAACGTGTTCAAAATGAGCAGTTGAAGGTGAGTCTGGTTTAC
CTATCATTCTACAACGAAGCTTTTCGTCACCACACTTCTTCGAAAGACGT
GTCCAGTGTTCCCGGAATTCCGGTTTCATTGGTACAGGACTTGCTGGATG
ACGACATTCGTATTCTTTCCAGTTTTCATAGCTGGGGTCGGCTTGAGCAC
ATCTTCTACGACGGCGCTGCCATGCGCAAAGTTCACATTTCTGAAAAGCT
CTTCTCGAACGAGATCTTGGAGAACATTACGACCTCGTTATCGGTTTCAC
TTCCACTTCCATTTCTTCCATCTCCAGAGCCCATGTTCGAGGAGGCCATG
ACGCAGACACTACAAGAAACAACGTACCGCTCCACGTATTCTTGCTCAGA
AGCTTACTTCGCATATCCGTCTCCTCCAGCAACCAGTATGGGAGAGTGCT
GTGCTGACATCTGCTTGGATCAGGCGCTTTACCAGTCGGTTGGGATCAGC
TCGACCTCAGAATGCTGTGGGTACTGTAACGAGGCGTCATGTCCTCTCGA
TGAAAGCAACCCACTAAGTCAGCTGGCTCCTATCTATCTAGAACCATACG
GGTATGTCCCTCCTACTACGACTCCCATTGATATCTAA
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protein sequence of Ggra1290.t1

>Ggra1290.t1 ID=Ggra1290.t1|Name=Ggra1290.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MTFYSAYITSLDHFVAEVFPYEKALGPVCLSEIELGAFHAFENSSLIYGE
IEKLHSIDPQLFYLPESMLSNSELLPFTHDEQSLVDGAWDFTLEALEDPP
SAMVEMIRSVLPPGLKILYDPEAETVCERFLSFKQGIPDYKLVTSNYFIA
DVVAKVIRGYLLGVPSDSCLGILQHAVAFVFNGIRCERVQNEQLKVSLVY
LSFYNEAFRHHTSSKDVSSVPGIPVSLVQDLLDDDIRILSSFHSWGRLEH
IFYDGAAMRKVHISEKLFSNEILENITTSLSVSLPLPFLPSPEPMFEEAM
TQTLQETTYRSTYSCSEAYFAYPSPPATSMGECCADICLDQALYQSVGIS
STSECCGYCNEASCPLDESNPLSQLAPIYLEPYGYVPPTTTPIDI*
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mRNA from alignment at tig00000235_pilon:42890..44077-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1290.t1 ID=Ggra1290.t1|Name=Ggra1290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000235_pilon:42890..44077- (Gracilaria gracilis GNS1m male)
ATGACCTTCTATTCTGCCTACATCACCAGTTTGGATCATTTCGTTGCTGA
AGTTTTCCCCTATGAGAAGGCATTGGGACCGGTGTGTTTAAGTGAGATTG
AGCTTGGAGCCTTTCACGCCTTCGAGAACAGTTCATTAATCTACGGTGAA
ATCGAGAAGTTGCACAGTATCGACCCACAACTGTTTTACTTACCGGAAAG
TATGCTTTCAAACTCTGAACTACTCCCTTTTACACATGATGAACAGTCTC
TTGTCGACGGTGCTTGGGACTTCACTTTGGAAGCACTAGAAGATCCGCCT
AGCGCAATGGTGGAAATGATTCGGAGCGTCCTTCCCCCAGGACTCAAAAT
TCTCTATGACCCGGAGGCAGAGACCGTCTGTGAACGTTTTCTTTCTTTCA
AGCAAGGTATTCCGGACTACAAACTTGTAACTTCAAATTATTTCATTGCT
GATGTGGTGGCCAAGGTTATTCGTGGGTATCTCCTAGGAGTTCCTAGCGA
TTCATGTCTCGGTATTCTTCAGCACGCTGTCGCGTTTGTCTTCAACGGAA
TTCGTTGTGAACGTGTTCAAAATGAGCAGTTGAAGGTGAGTCTGGTTTAC
CTATCATTCTACAACGAAGCTTTTCGTCACCACACTTCTTCGAAAGACGT
GTCCAGTGTTCCCGGAATTCCGGTTTCATTGGTACAGGACTTGCTGGATG
ACGACATTCGTATTCTTTCCAGTTTTCATAGCTGGGGTCGGCTTGAGCAC
ATCTTCTACGACGGCGCTGCCATGCGCAAAGTTCACATTTCTGAAAAGCT
CTTCTCGAACGAGATCTTGGAGAACATTACGACCTCGTTATCGGTTTCAC
TTCCACTTCCATTTCTTCCATCTCCAGAGCCCATGTTCGAGGAGGCCATG
ACGCAGACACTACAAGAAACAACGTACCGCTCCACGTATTCTTGCTCAGA
AGCTTACTTCGCATATCCGTCTCCTCCAGCAACCAGTATGGGAGAGTGCT
GTGCTGACATCTGCTTGGATCAGGCGCTTTACCAGTCGGTTGGGATCAGC
TCGACCTCAGAATGCTGTGGGTACTGTAACGAGGCGTCATGTCCTCTCGA
TGAAAGCAACCCACTAAGTCAGCTGGCTCCTATCTATCTAGAACCATACG
GGTATGTCCCTCCTACTACGACTCCCATTGATATCTAA
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Coding sequence (CDS) from alignment at tig00000235_pilon:42890..44077-

>Ggra1290.t1 ID=Ggra1290.t1|Name=Ggra1290.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000235_pilon:42890..44077- (Gracilaria gracilis GNS1m male)
ATGACCTTCTATTCTGCCTACATCACCAGTTTGGATCATTTCGTTGCTGA
AGTTTTCCCCTATGAGAAGGCATTGGGACCGGTGTGTTTAAGTGAGATTG
AGCTTGGAGCCTTTCACGCCTTCGAGAACAGTTCATTAATCTACGGTGAA
ATCGAGAAGTTGCACAGTATCGACCCACAACTGTTTTACTTACCGGAAAG
TATGCTTTCAAACTCTGAACTACTCCCTTTTACACATGATGAACAGTCTC
TTGTCGACGGTGCTTGGGACTTCACTTTGGAAGCACTAGAAGATCCGCCT
AGCGCAATGGTGGAAATGATTCGGAGCGTCCTTCCCCCAGGACTCAAAAT
TCTCTATGACCCGGAGGCAGAGACCGTCTGTGAACGTTTTCTTTCTTTCA
AGCAAGGTATTCCGGACTACAAACTTGTAACTTCAAATTATTTCATTGCT
GATGTGGTGGCCAAGGTTATTCGTGGGTATCTCCTAGGAGTTCCTAGCGA
TTCATGTCTCGGTATTCTTCAGCACGCTGTCGCGTTTGTCTTCAACGGAA
TTCGTTGTGAACGTGTTCAAAATGAGCAGTTGAAGGTGAGTCTGGTTTAC
CTATCATTCTACAACGAAGCTTTTCGTCACCACACTTCTTCGAAAGACGT
GTCCAGTGTTCCCGGAATTCCGGTTTCATTGGTACAGGACTTGCTGGATG
ACGACATTCGTATTCTTTCCAGTTTTCATAGCTGGGGTCGGCTTGAGCAC
ATCTTCTACGACGGCGCTGCCATGCGCAAAGTTCACATTTCTGAAAAGCT
CTTCTCGAACGAGATCTTGGAGAACATTACGACCTCGTTATCGGTTTCAC
TTCCACTTCCATTTCTTCCATCTCCAGAGCCCATGTTCGAGGAGGCCATG
ACGCAGACACTACAAGAAACAACGTACCGCTCCACGTATTCTTGCTCAGA
AGCTTACTTCGCATATCCGTCTCCTCCAGCAACCAGTATGGGAGAGTGCT
GTGCTGACATCTGCTTGGATCAGGCGCTTTACCAGTCGGTTGGGATCAGC
TCGACCTCAGAATGCTGTGGGTACTGTAACGAGGCGTCATGTCCTCTCGA
TGAAAGCAACCCACTAAGTCAGCTGGCTCCTATCTATCTAGAACCATACG
GGTATGTCCCTCCTACTACGACTCCCATTGATATCTAA
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