Ggra1288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1288.t1
Unique NameGgra1288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:39158..40024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog547042.BACCOPRO_00968
PFAMsGlyco_hydro_16
Max annot lvl976|Bacteroidetes
Evalue1.96e-33
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,4NVAB@976|Bacteroidetes,2FV4Z@200643|Bacteroidia,4AUJB@815|Bacteroidaceae
DescriptionGlycosyl hydrolases family 16
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1288Ggra1288Gracilaria gracilis GNS1m malegenetig00000235_pilon 39158..40024 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1288.t1.stop1Ggra1288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 39158..39160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1288.t1.CDS1Ggra1288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 39158..40024 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1288.t1.exon1Ggra1288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 39158..40024 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1288.t1.start1Ggra1288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 40022..40024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1288.t1Ggra1288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 39158..40024 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1288.t1 ID=Ggra1288.t1|Name=Ggra1288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MVIRMQIPRLNIDPDKRGAFAPPPSYVTPSRGKRWEKDWEMSDEFDKVRG
AWGRRSRWHRYHPNWAGRGLGWFNHRNVYIERGSLFLVSREEQPTDEVLR
VMNRDRRLLGYRRYSTAFIRTRAKRKYGYFEIYCKMMDSAISSAFWFGRR
RDFEIDVFEYSTSEKRPTSGREFKNLFMMNTHVFTGPREEDDIASPMEVD
VGRDLSQEWVKVGLLWTRERIVWYLNDIKVREKPNTDWHSKLHLQMDSEV
FADWFGLPGEYGDNNLPNKQQSTRFEIKYVRSYRMVNQ*
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spliced messenger RNA

>Ggra1288.t1 ID=Ggra1288.t1|Name=Ggra1288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000235_pilon:39158..40024- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATTCGCATGCAGATTCCCCGTCTGAATATCGACCCGGATAAACG
CGGTGCATTCGCACCACCGCCATCGTATGTAACGCCAAGTAGAGGAAAGC
GTTGGGAGAAAGATTGGGAGATGTCAGATGAATTTGACAAAGTTCGCGGT
GCGTGGGGTCGCCGCAGTAGATGGCATCGCTATCATCCGAATTGGGCAGG
GCGTGGGCTTGGGTGGTTTAACCATCGAAATGTGTACATAGAAAGGGGTT
CCCTTTTCCTGGTAAGCAGAGAAGAGCAACCCACTGACGAAGTACTGCGC
GTAATGAATCGGGACAGGCGTCTGCTTGGATACCGAAGGTATTCTACGGC
TTTCATTAGGACTCGAGCGAAAAGGAAGTACGGGTATTTTGAGATCTACT
GCAAGATGATGGATTCGGCTATTAGTTCAGCGTTTTGGTTTGGAAGGAGA
CGGGACTTTGAGATTGACGTTTTCGAGTACTCGACCAGCGAAAAGCGACC
AACCAGTGGTAGAGAGTTCAAGAACTTATTCATGATGAACACACATGTAT
TTACTGGTCCGAGAGAAGAAGATGACATTGCAAGCCCCATGGAAGTAGAT
GTAGGGCGAGACTTGAGCCAGGAATGGGTAAAGGTAGGTCTCTTGTGGAC
CAGGGAGCGTATCGTATGGTACCTGAACGACATTAAGGTACGCGAAAAGC
CGAATACCGACTGGCATTCCAAGCTCCACTTACAAATGGATTCGGAAGTG
TTTGCCGATTGGTTTGGTCTTCCTGGGGAATATGGTGACAACAATCTTCC
CAACAAGCAGCAATCGACTCGATTTGAAATTAAGTATGTTCGCAGTTACC
GTATGGTTAATCAATAG
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protein sequence of Ggra1288.t1

>Ggra1288.t1 ID=Ggra1288.t1|Name=Ggra1288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MVIRMQIPRLNIDPDKRGAFAPPPSYVTPSRGKRWEKDWEMSDEFDKVRG
AWGRRSRWHRYHPNWAGRGLGWFNHRNVYIERGSLFLVSREEQPTDEVLR
VMNRDRRLLGYRRYSTAFIRTRAKRKYGYFEIYCKMMDSAISSAFWFGRR
RDFEIDVFEYSTSEKRPTSGREFKNLFMMNTHVFTGPREEDDIASPMEVD
VGRDLSQEWVKVGLLWTRERIVWYLNDIKVREKPNTDWHSKLHLQMDSEV
FADWFGLPGEYGDNNLPNKQQSTRFEIKYVRSYRMVNQ*
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mRNA from alignment at tig00000235_pilon:39158..40024-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1288.t1 ID=Ggra1288.t1|Name=Ggra1288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000235_pilon:39158..40024- (Gracilaria gracilis GNS1m male)
ATGGTGATTCGCATGCAGATTCCCCGTCTGAATATCGACCCGGATAAACG
CGGTGCATTCGCACCACCGCCATCGTATGTAACGCCAAGTAGAGGAAAGC
GTTGGGAGAAAGATTGGGAGATGTCAGATGAATTTGACAAAGTTCGCGGT
GCGTGGGGTCGCCGCAGTAGATGGCATCGCTATCATCCGAATTGGGCAGG
GCGTGGGCTTGGGTGGTTTAACCATCGAAATGTGTACATAGAAAGGGGTT
CCCTTTTCCTGGTAAGCAGAGAAGAGCAACCCACTGACGAAGTACTGCGC
GTAATGAATCGGGACAGGCGTCTGCTTGGATACCGAAGGTATTCTACGGC
TTTCATTAGGACTCGAGCGAAAAGGAAGTACGGGTATTTTGAGATCTACT
GCAAGATGATGGATTCGGCTATTAGTTCAGCGTTTTGGTTTGGAAGGAGA
CGGGACTTTGAGATTGACGTTTTCGAGTACTCGACCAGCGAAAAGCGACC
AACCAGTGGTAGAGAGTTCAAGAACTTATTCATGATGAACACACATGTAT
TTACTGGTCCGAGAGAAGAAGATGACATTGCAAGCCCCATGGAAGTAGAT
GTAGGGCGAGACTTGAGCCAGGAATGGGTAAAGGTAGGTCTCTTGTGGAC
CAGGGAGCGTATCGTATGGTACCTGAACGACATTAAGGTACGCGAAAAGC
CGAATACCGACTGGCATTCCAAGCTCCACTTACAAATGGATTCGGAAGTG
TTTGCCGATTGGTTTGGTCTTCCTGGGGAATATGGTGACAACAATCTTCC
CAACAAGCAGCAATCGACTCGATTTGAAATTAAGTATGTTCGCAGTTACC
GTATGGTTAATCAATAG
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Coding sequence (CDS) from alignment at tig00000235_pilon:39158..40024-

>Ggra1288.t1 ID=Ggra1288.t1|Name=Ggra1288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000235_pilon:39158..40024- (Gracilaria gracilis GNS1m male)
ATGGTGATTCGCATGCAGATTCCCCGTCTGAATATCGACCCGGATAAACG
CGGTGCATTCGCACCACCGCCATCGTATGTAACGCCAAGTAGAGGAAAGC
GTTGGGAGAAAGATTGGGAGATGTCAGATGAATTTGACAAAGTTCGCGGT
GCGTGGGGTCGCCGCAGTAGATGGCATCGCTATCATCCGAATTGGGCAGG
GCGTGGGCTTGGGTGGTTTAACCATCGAAATGTGTACATAGAAAGGGGTT
CCCTTTTCCTGGTAAGCAGAGAAGAGCAACCCACTGACGAAGTACTGCGC
GTAATGAATCGGGACAGGCGTCTGCTTGGATACCGAAGGTATTCTACGGC
TTTCATTAGGACTCGAGCGAAAAGGAAGTACGGGTATTTTGAGATCTACT
GCAAGATGATGGATTCGGCTATTAGTTCAGCGTTTTGGTTTGGAAGGAGA
CGGGACTTTGAGATTGACGTTTTCGAGTACTCGACCAGCGAAAAGCGACC
AACCAGTGGTAGAGAGTTCAAGAACTTATTCATGATGAACACACATGTAT
TTACTGGTCCGAGAGAAGAAGATGACATTGCAAGCCCCATGGAAGTAGAT
GTAGGGCGAGACTTGAGCCAGGAATGGGTAAAGGTAGGTCTCTTGTGGAC
CAGGGAGCGTATCGTATGGTACCTGAACGACATTAAGGTACGCGAAAAGC
CGAATACCGACTGGCATTCCAAGCTCCACTTACAAATGGATTCGGAAGTG
TTTGCCGATTGGTTTGGTCTTCCTGGGGAATATGGTGACAACAATCTTCC
CAACAAGCAGCAATCGACTCGATTTGAAATTAAGTATGTTCGCAGTTACC
GTATGGTTAATCAATAG
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