Ggra1286.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1286.t1
Unique NameGgra1286.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:29801..30892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD20910
Max annot lvl2903.EOD20910|-
Evalue4.89e-24
EggNOG OGs2EXBI@1|root,2SZ19@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1286Ggra1286Gracilaria gracilis GNS1m malegenetig00000235_pilon 29801..30892 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1286.t1.stop1Ggra1286.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 29801..29803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1286.t1.CDS1Ggra1286.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 29801..30892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1286.t1.exon1Ggra1286.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 29801..30892 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1286.t1.start1Ggra1286.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 30890..30892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1286.t1Ggra1286.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 29801..30892 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1286.t1 ID=Ggra1286.t1|Name=Ggra1286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MLSGVRSKIRPKLERISMPNEMTSKLERQGFDTDDPKHARVDVSNEKMLH
KAQVHEDSIRSGTQKNTERSNTVHRDTGTRKSSVGKKYDKEGLALLDWSA
RDRSELKEPAECRKWRLAAKDPRKLHLYRGHFVSHDFTDWFIYAAFFTEL
WHTKQGKERPVYLDVAANHARRWSGTYFLDRCMGWDGFCVEANEKYWEEL
HTERQCRVVAKCVSDRERTVNFSLTDAYGGVVSADGVGGVNGSMHERDSK
FKGRFRGIKPMKCSTLGKEVGVKHVHFWSLDVEGHEIEVLRGFDWKKTRV
DVIVTENRGKEVKEILSKQGYEQVSKVLKDDIWIRNGSGFEVSERMKQLM
RSFDRSSYRFLGL*
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spliced messenger RNA

>Ggra1286.t1 ID=Ggra1286.t1|Name=Ggra1286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000235_pilon:29801..30892- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCGGGCGTACGGTCCAAGATTCGTCCAAAATTAGAAAGGATTTC
AATGCCAAACGAGATGACGAGCAAGCTGGAAAGACAAGGTTTTGACACGG
ACGACCCAAAACATGCCCGAGTTGATGTTTCCAACGAGAAGATGCTTCAC
AAGGCTCAGGTTCATGAGGATTCAATTCGGAGCGGTACCCAGAAAAACAC
GGAGCGATCGAATACGGTTCACAGGGATACGGGGACCAGAAAAAGTTCAG
TCGGGAAAAAGTACGATAAGGAAGGGCTCGCGCTCTTAGATTGGTCGGCT
CGGGACAGGTCAGAACTGAAAGAACCAGCTGAATGCAGGAAATGGCGCCT
AGCAGCCAAAGATCCGCGGAAACTGCATCTGTATCGAGGCCATTTCGTCT
CGCATGACTTCACCGATTGGTTCATATATGCAGCATTCTTCACAGAGCTG
TGGCACACAAAACAGGGCAAGGAACGACCTGTATATTTAGATGTCGCAGC
AAATCACGCGAGGCGGTGGTCAGGGACATACTTCCTGGATCGGTGCATGG
GTTGGGATGGTTTTTGTGTGGAGGCGAACGAGAAGTATTGGGAAGAGCTA
CATACTGAAAGGCAATGCAGAGTGGTGGCAAAGTGTGTTAGCGACAGAGA
GAGAACAGTCAACTTCTCGTTAACTGACGCGTACGGGGGTGTAGTGTCGG
CTGATGGTGTCGGCGGAGTGAATGGAAGCATGCATGAGAGAGACTCCAAG
TTCAAAGGCCGGTTTCGCGGAATCAAGCCAATGAAGTGTTCAACGCTCGG
CAAAGAAGTGGGAGTGAAGCACGTGCATTTTTGGAGTCTCGATGTAGAAG
GGCACGAAATCGAGGTGCTGCGTGGTTTCGACTGGAAGAAAACTCGTGTG
GATGTGATTGTGACGGAGAACCGAGGGAAGGAAGTAAAGGAGATTCTATC
GAAGCAAGGATACGAGCAAGTAAGCAAAGTACTCAAGGATGATATCTGGA
TACGCAACGGGAGCGGATTTGAGGTAAGCGAGCGCATGAAGCAGTTAATG
AGAAGCTTTGACAGATCTAGCTATCGATTTTTGGGGCTTTAG
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protein sequence of Ggra1286.t1

>Ggra1286.t1 ID=Ggra1286.t1|Name=Ggra1286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MLSGVRSKIRPKLERISMPNEMTSKLERQGFDTDDPKHARVDVSNEKMLH
KAQVHEDSIRSGTQKNTERSNTVHRDTGTRKSSVGKKYDKEGLALLDWSA
RDRSELKEPAECRKWRLAAKDPRKLHLYRGHFVSHDFTDWFIYAAFFTEL
WHTKQGKERPVYLDVAANHARRWSGTYFLDRCMGWDGFCVEANEKYWEEL
HTERQCRVVAKCVSDRERTVNFSLTDAYGGVVSADGVGGVNGSMHERDSK
FKGRFRGIKPMKCSTLGKEVGVKHVHFWSLDVEGHEIEVLRGFDWKKTRV
DVIVTENRGKEVKEILSKQGYEQVSKVLKDDIWIRNGSGFEVSERMKQLM
RSFDRSSYRFLGL*
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mRNA from alignment at tig00000235_pilon:29801..30892-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1286.t1 ID=Ggra1286.t1|Name=Ggra1286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000235_pilon:29801..30892- (Gracilaria gracilis GNS1m male)
ATGCTTTCGGGCGTACGGTCCAAGATTCGTCCAAAATTAGAAAGGATTTC
AATGCCAAACGAGATGACGAGCAAGCTGGAAAGACAAGGTTTTGACACGG
ACGACCCAAAACATGCCCGAGTTGATGTTTCCAACGAGAAGATGCTTCAC
AAGGCTCAGGTTCATGAGGATTCAATTCGGAGCGGTACCCAGAAAAACAC
GGAGCGATCGAATACGGTTCACAGGGATACGGGGACCAGAAAAAGTTCAG
TCGGGAAAAAGTACGATAAGGAAGGGCTCGCGCTCTTAGATTGGTCGGCT
CGGGACAGGTCAGAACTGAAAGAACCAGCTGAATGCAGGAAATGGCGCCT
AGCAGCCAAAGATCCGCGGAAACTGCATCTGTATCGAGGCCATTTCGTCT
CGCATGACTTCACCGATTGGTTCATATATGCAGCATTCTTCACAGAGCTG
TGGCACACAAAACAGGGCAAGGAACGACCTGTATATTTAGATGTCGCAGC
AAATCACGCGAGGCGGTGGTCAGGGACATACTTCCTGGATCGGTGCATGG
GTTGGGATGGTTTTTGTGTGGAGGCGAACGAGAAGTATTGGGAAGAGCTA
CATACTGAAAGGCAATGCAGAGTGGTGGCAAAGTGTGTTAGCGACAGAGA
GAGAACAGTCAACTTCTCGTTAACTGACGCGTACGGGGGTGTAGTGTCGG
CTGATGGTGTCGGCGGAGTGAATGGAAGCATGCATGAGAGAGACTCCAAG
TTCAAAGGCCGGTTTCGCGGAATCAAGCCAATGAAGTGTTCAACGCTCGG
CAAAGAAGTGGGAGTGAAGCACGTGCATTTTTGGAGTCTCGATGTAGAAG
GGCACGAAATCGAGGTGCTGCGTGGTTTCGACTGGAAGAAAACTCGTGTG
GATGTGATTGTGACGGAGAACCGAGGGAAGGAAGTAAAGGAGATTCTATC
GAAGCAAGGATACGAGCAAGTAAGCAAAGTACTCAAGGATGATATCTGGA
TACGCAACGGGAGCGGATTTGAGGTAAGCGAGCGCATGAAGCAGTTAATG
AGAAGCTTTGACAGATCTAGCTATCGATTTTTGGGGCTTTAG
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Coding sequence (CDS) from alignment at tig00000235_pilon:29801..30892-

>Ggra1286.t1 ID=Ggra1286.t1|Name=Ggra1286.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000235_pilon:29801..30892- (Gracilaria gracilis GNS1m male)
ATGCTTTCGGGCGTACGGTCCAAGATTCGTCCAAAATTAGAAAGGATTTC
AATGCCAAACGAGATGACGAGCAAGCTGGAAAGACAAGGTTTTGACACGG
ACGACCCAAAACATGCCCGAGTTGATGTTTCCAACGAGAAGATGCTTCAC
AAGGCTCAGGTTCATGAGGATTCAATTCGGAGCGGTACCCAGAAAAACAC
GGAGCGATCGAATACGGTTCACAGGGATACGGGGACCAGAAAAAGTTCAG
TCGGGAAAAAGTACGATAAGGAAGGGCTCGCGCTCTTAGATTGGTCGGCT
CGGGACAGGTCAGAACTGAAAGAACCAGCTGAATGCAGGAAATGGCGCCT
AGCAGCCAAAGATCCGCGGAAACTGCATCTGTATCGAGGCCATTTCGTCT
CGCATGACTTCACCGATTGGTTCATATATGCAGCATTCTTCACAGAGCTG
TGGCACACAAAACAGGGCAAGGAACGACCTGTATATTTAGATGTCGCAGC
AAATCACGCGAGGCGGTGGTCAGGGACATACTTCCTGGATCGGTGCATGG
GTTGGGATGGTTTTTGTGTGGAGGCGAACGAGAAGTATTGGGAAGAGCTA
CATACTGAAAGGCAATGCAGAGTGGTGGCAAAGTGTGTTAGCGACAGAGA
GAGAACAGTCAACTTCTCGTTAACTGACGCGTACGGGGGTGTAGTGTCGG
CTGATGGTGTCGGCGGAGTGAATGGAAGCATGCATGAGAGAGACTCCAAG
TTCAAAGGCCGGTTTCGCGGAATCAAGCCAATGAAGTGTTCAACGCTCGG
CAAAGAAGTGGGAGTGAAGCACGTGCATTTTTGGAGTCTCGATGTAGAAG
GGCACGAAATCGAGGTGCTGCGTGGTTTCGACTGGAAGAAAACTCGTGTG
GATGTGATTGTGACGGAGAACCGAGGGAAGGAAGTAAAGGAGATTCTATC
GAAGCAAGGATACGAGCAAGTAAGCAAAGTACTCAAGGATGATATCTGGA
TACGCAACGGGAGCGGATTTGAGGTAAGCGAGCGCATGAAGCAGTTAATG
AGAAGCTTTGACAGATCTAGCTATCGATTTTTGGGGCTTTAG
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