Ggra1285.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1285.t1
Unique NameGgra1285.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:29233..29793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004993779.1
Max annot lvl33154|Opisthokonta
Evalue7.57e-45
EggNOG OGs2CYTX@1|root,2S6FF@2759|Eukaryota,3AADZ@33154|Opisthokonta
DescriptionFlagellar associated protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1285Ggra1285Gracilaria gracilis GNS1m malegenetig00000235_pilon 29233..29793 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1285.t1.start1Ggra1285.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 29233..29235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1285.t1.CDS1Ggra1285.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 29233..29793 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1285.t1.exon1Ggra1285.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 29233..29793 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1285.t1.stop1Ggra1285.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 29791..29793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1285.t1Ggra1285.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 29233..29793 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1285.t1 ID=Ggra1285.t1|Name=Ggra1285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MAPTEKQMKASIKEGGKKGQDLAGMSDMGGVKFFSVALESPNGQWELMDA
VLEGMNKEVDPAGDDRKGGAGHIGKCLLFADEKALLILCHVPDVNKDLID
QQEWFTKVIESVGATKIGDAITIDGPGAGIVLKAEMKADPDANKFPLKER
DVAIGESFNYLVSKELVRPEESDDDANYAEEAGIEW*
back to top

spliced messenger RNA

>Ggra1285.t1 ID=Ggra1285.t1|Name=Ggra1285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000235_pilon:29233..29793+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCTACCGAGAAGCAGATGAAGGCCTCGATCAAGGAAGGCGGAAA
AAAGGGCCAAGACCTCGCCGGCATGTCCGACATGGGTGGTGTCAAGTTCT
TCTCCGTCGCCTTGGAAAGCCCCAATGGCCAGTGGGAGCTCATGGACGCT
GTTCTGGAGGGAATGAACAAGGAGGTCGACCCCGCAGGTGACGATCGAAA
GGGCGGCGCCGGCCACATCGGCAAGTGTTTGCTGTTCGCCGATGAGAAGG
CGCTCCTCATCTTGTGCCATGTTCCGGACGTCAACAAAGACCTCATCGAT
CAGCAAGAGTGGTTTACTAAAGTTATTGAAAGTGTTGGTGCTACCAAGAT
CGGCGATGCTATCACCATTGACGGACCGGGCGCTGGTATTGTTCTCAAAG
CCGAAATGAAAGCCGATCCAGACGCGAATAAATTCCCGCTTAAGGAGCGC
GATGTCGCCATAGGAGAGAGTTTCAACTACCTAGTCAGCAAGGAACTGGT
AAGGCCTGAAGAGAGTGACGATGACGCCAATTACGCAGAGGAGGCAGGCA
TCGAATGGTAA
back to top

protein sequence of Ggra1285.t1

>Ggra1285.t1 ID=Ggra1285.t1|Name=Ggra1285.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MAPTEKQMKASIKEGGKKGQDLAGMSDMGGVKFFSVALESPNGQWELMDA
VLEGMNKEVDPAGDDRKGGAGHIGKCLLFADEKALLILCHVPDVNKDLID
QQEWFTKVIESVGATKIGDAITIDGPGAGIVLKAEMKADPDANKFPLKER
DVAIGESFNYLVSKELVRPEESDDDANYAEEAGIEW*
back to top

mRNA from alignment at tig00000235_pilon:29233..29793+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1285.t1 ID=Ggra1285.t1|Name=Ggra1285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000235_pilon:29233..29793+ (Gracilaria gracilis GNS1m male)
ATGGCCCCTACCGAGAAGCAGATGAAGGCCTCGATCAAGGAAGGCGGAAA
AAAGGGCCAAGACCTCGCCGGCATGTCCGACATGGGTGGTGTCAAGTTCT
TCTCCGTCGCCTTGGAAAGCCCCAATGGCCAGTGGGAGCTCATGGACGCT
GTTCTGGAGGGAATGAACAAGGAGGTCGACCCCGCAGGTGACGATCGAAA
GGGCGGCGCCGGCCACATCGGCAAGTGTTTGCTGTTCGCCGATGAGAAGG
CGCTCCTCATCTTGTGCCATGTTCCGGACGTCAACAAAGACCTCATCGAT
CAGCAAGAGTGGTTTACTAAAGTTATTGAAAGTGTTGGTGCTACCAAGAT
CGGCGATGCTATCACCATTGACGGACCGGGCGCTGGTATTGTTCTCAAAG
CCGAAATGAAAGCCGATCCAGACGCGAATAAATTCCCGCTTAAGGAGCGC
GATGTCGCCATAGGAGAGAGTTTCAACTACCTAGTCAGCAAGGAACTGGT
AAGGCCTGAAGAGAGTGACGATGACGCCAATTACGCAGAGGAGGCAGGCA
TCGAATGGTAA
back to top

Coding sequence (CDS) from alignment at tig00000235_pilon:29233..29793+

>Ggra1285.t1 ID=Ggra1285.t1|Name=Ggra1285.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000235_pilon:29233..29793+ (Gracilaria gracilis GNS1m male)
ATGGCCCCTACCGAGAAGCAGATGAAGGCCTCGATCAAGGAAGGCGGAAA
AAAGGGCCAAGACCTCGCCGGCATGTCCGACATGGGTGGTGTCAAGTTCT
TCTCCGTCGCCTTGGAAAGCCCCAATGGCCAGTGGGAGCTCATGGACGCT
GTTCTGGAGGGAATGAACAAGGAGGTCGACCCCGCAGGTGACGATCGAAA
GGGCGGCGCCGGCCACATCGGCAAGTGTTTGCTGTTCGCCGATGAGAAGG
CGCTCCTCATCTTGTGCCATGTTCCGGACGTCAACAAAGACCTCATCGAT
CAGCAAGAGTGGTTTACTAAAGTTATTGAAAGTGTTGGTGCTACCAAGAT
CGGCGATGCTATCACCATTGACGGACCGGGCGCTGGTATTGTTCTCAAAG
CCGAAATGAAAGCCGATCCAGACGCGAATAAATTCCCGCTTAAGGAGCGC
GATGTCGCCATAGGAGAGAGTTTCAACTACCTAGTCAGCAAGGAACTGGT
AAGGCCTGAAGAGAGTGACGATGACGCCAATTACGCAGAGGAGGCAGGCA
TCGAATGGTAA
back to top