Ggra1284.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1284.t1
Unique NameGgra1284.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:24026..25129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD20910
Max annot lvl2903.EOD20910|-
Evalue2.63e-23
EggNOG OGs2EXBI@1|root,2SZ19@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1284Ggra1284Gracilaria gracilis GNS1m malegenetig00000235_pilon 24026..25129 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1284.t1.stop1Ggra1284.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 24026..24028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1284.t1.CDS1Ggra1284.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 24026..25129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1284.t1.exon1Ggra1284.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 24026..25129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1284.t1.start1Ggra1284.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 25127..25129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1284.t1Ggra1284.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 24026..25129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1284.t1 ID=Ggra1284.t1|Name=Ggra1284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MSILLIALSGLRFRTCPKLERISMPRATTDMLKGQSFGMYQPKHARVDAP
DEKMPQKAQVHEDWIGAQKSTERSNAVHKEMGNSEESPDETFDDDGLAHM
NWSARDRSELKEPAECREWRLAAKDPRKLHLYRTHFVSHDFADWFIYAAF
FTELWHTKQGKERPVYLDVAANHARRWSSTYFLDRCMGWDGFCVEANEKY
WEELHTERQCRVVAKCVSDRERTVNFSLTDAYGGVVSADGVGGVNGSMHE
KDSKYKSRFRGIKPMKCSTLGKEVGVKHVHFWSLDVEGHEIEVLRGFDWK
KTRVDVIVTENREKEIKEILSKQGYEQVSKVLKDDIWIRNGSGFEVSERM
KQLMRSFDRSSYRFLGF*
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spliced messenger RNA

>Ggra1284.t1 ID=Ggra1284.t1|Name=Ggra1284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000235_pilon:24026..25129- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTTTACTCATCGCGCTTTCGGGCTTACGGTTCAGAACCTGTCC
AAAACTAGAAAGGATATCAATGCCAAGAGCCACGACCGACATGCTGAAAG
GACAAAGCTTTGGCATGTACCAACCAAAACATGCCCGAGTCGACGCTCCT
GATGAGAAGATGCCTCAAAAGGCTCAGGTTCATGAAGATTGGATCGGTGC
CCAGAAAAGCACAGAGCGATCGAATGCAGTTCACAAGGAAATGGGGAACA
GCGAAGAATCACCCGATGAAACGTTCGACGATGACGGACTTGCACACATG
AATTGGTCTGCTCGCGATAGATCCGAACTAAAAGAACCAGCTGAATGCAG
GGAATGGCGCCTAGCAGCCAAAGATCCGCGGAAGCTGCATCTGTATCGAA
CTCATTTCGTCTCGCATGACTTCGCCGATTGGTTCATATATGCAGCATTC
TTCACAGAGCTGTGGCACACAAAACAGGGCAAGGAACGACCTGTATATTT
AGACGTTGCCGCAAATCACGCGAGGCGGTGGTCAAGTACATACTTCCTGG
ATCGGTGCATGGGTTGGGATGGTTTTTGTGTGGAGGCGAACGAGAAGTAT
TGGGAAGAGCTGCATACTGAAAGGCAATGCAGAGTGGTGGCAAAGTGTGT
TAGCGACAGAGAGAGAACAGTCAACTTCTCGTTAACTGACGCGTACGGGG
GTGTAGTGTCGGCTGATGGTGTCGGCGGAGTGAATGGAAGCATGCATGAG
AAAGACTCAAAGTACAAAAGCAGGTTTCGCGGAATCAAGCCAATGAAGTG
TTCAACGCTCGGCAAAGAAGTGGGAGTGAAGCACGTGCATTTTTGGAGTC
TCGATGTAGAAGGGCACGAAATCGAGGTGCTGCGTGGTTTCGACTGGAAG
AAAACTCGTGTGGATGTGATTGTGACGGAGAACCGAGAGAAGGAAATAAA
GGAGATTCTATCGAAGCAAGGATACGAGCAAGTAAGCAAAGTACTCAAGG
ATGATATCTGGATCCGCAACGGGAGCGGATTTGAGGTAAGCGAGCGCATG
AAGCAGTTAATGAGAAGCTTTGACAGATCTAGCTACCGATTCTTGGGGTT
TTAG
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protein sequence of Ggra1284.t1

>Ggra1284.t1 ID=Ggra1284.t1|Name=Ggra1284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MSILLIALSGLRFRTCPKLERISMPRATTDMLKGQSFGMYQPKHARVDAP
DEKMPQKAQVHEDWIGAQKSTERSNAVHKEMGNSEESPDETFDDDGLAHM
NWSARDRSELKEPAECREWRLAAKDPRKLHLYRTHFVSHDFADWFIYAAF
FTELWHTKQGKERPVYLDVAANHARRWSSTYFLDRCMGWDGFCVEANEKY
WEELHTERQCRVVAKCVSDRERTVNFSLTDAYGGVVSADGVGGVNGSMHE
KDSKYKSRFRGIKPMKCSTLGKEVGVKHVHFWSLDVEGHEIEVLRGFDWK
KTRVDVIVTENREKEIKEILSKQGYEQVSKVLKDDIWIRNGSGFEVSERM
KQLMRSFDRSSYRFLGF*
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mRNA from alignment at tig00000235_pilon:24026..25129-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1284.t1 ID=Ggra1284.t1|Name=Ggra1284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000235_pilon:24026..25129- (Gracilaria gracilis GNS1m male)
ATGAGCATTTTACTCATCGCGCTTTCGGGCTTACGGTTCAGAACCTGTCC
AAAACTAGAAAGGATATCAATGCCAAGAGCCACGACCGACATGCTGAAAG
GACAAAGCTTTGGCATGTACCAACCAAAACATGCCCGAGTCGACGCTCCT
GATGAGAAGATGCCTCAAAAGGCTCAGGTTCATGAAGATTGGATCGGTGC
CCAGAAAAGCACAGAGCGATCGAATGCAGTTCACAAGGAAATGGGGAACA
GCGAAGAATCACCCGATGAAACGTTCGACGATGACGGACTTGCACACATG
AATTGGTCTGCTCGCGATAGATCCGAACTAAAAGAACCAGCTGAATGCAG
GGAATGGCGCCTAGCAGCCAAAGATCCGCGGAAGCTGCATCTGTATCGAA
CTCATTTCGTCTCGCATGACTTCGCCGATTGGTTCATATATGCAGCATTC
TTCACAGAGCTGTGGCACACAAAACAGGGCAAGGAACGACCTGTATATTT
AGACGTTGCCGCAAATCACGCGAGGCGGTGGTCAAGTACATACTTCCTGG
ATCGGTGCATGGGTTGGGATGGTTTTTGTGTGGAGGCGAACGAGAAGTAT
TGGGAAGAGCTGCATACTGAAAGGCAATGCAGAGTGGTGGCAAAGTGTGT
TAGCGACAGAGAGAGAACAGTCAACTTCTCGTTAACTGACGCGTACGGGG
GTGTAGTGTCGGCTGATGGTGTCGGCGGAGTGAATGGAAGCATGCATGAG
AAAGACTCAAAGTACAAAAGCAGGTTTCGCGGAATCAAGCCAATGAAGTG
TTCAACGCTCGGCAAAGAAGTGGGAGTGAAGCACGTGCATTTTTGGAGTC
TCGATGTAGAAGGGCACGAAATCGAGGTGCTGCGTGGTTTCGACTGGAAG
AAAACTCGTGTGGATGTGATTGTGACGGAGAACCGAGAGAAGGAAATAAA
GGAGATTCTATCGAAGCAAGGATACGAGCAAGTAAGCAAAGTACTCAAGG
ATGATATCTGGATCCGCAACGGGAGCGGATTTGAGGTAAGCGAGCGCATG
AAGCAGTTAATGAGAAGCTTTGACAGATCTAGCTACCGATTCTTGGGGTT
TTAG
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Coding sequence (CDS) from alignment at tig00000235_pilon:24026..25129-

>Ggra1284.t1 ID=Ggra1284.t1|Name=Ggra1284.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000235_pilon:24026..25129- (Gracilaria gracilis GNS1m male)
ATGAGCATTTTACTCATCGCGCTTTCGGGCTTACGGTTCAGAACCTGTCC
AAAACTAGAAAGGATATCAATGCCAAGAGCCACGACCGACATGCTGAAAG
GACAAAGCTTTGGCATGTACCAACCAAAACATGCCCGAGTCGACGCTCCT
GATGAGAAGATGCCTCAAAAGGCTCAGGTTCATGAAGATTGGATCGGTGC
CCAGAAAAGCACAGAGCGATCGAATGCAGTTCACAAGGAAATGGGGAACA
GCGAAGAATCACCCGATGAAACGTTCGACGATGACGGACTTGCACACATG
AATTGGTCTGCTCGCGATAGATCCGAACTAAAAGAACCAGCTGAATGCAG
GGAATGGCGCCTAGCAGCCAAAGATCCGCGGAAGCTGCATCTGTATCGAA
CTCATTTCGTCTCGCATGACTTCGCCGATTGGTTCATATATGCAGCATTC
TTCACAGAGCTGTGGCACACAAAACAGGGCAAGGAACGACCTGTATATTT
AGACGTTGCCGCAAATCACGCGAGGCGGTGGTCAAGTACATACTTCCTGG
ATCGGTGCATGGGTTGGGATGGTTTTTGTGTGGAGGCGAACGAGAAGTAT
TGGGAAGAGCTGCATACTGAAAGGCAATGCAGAGTGGTGGCAAAGTGTGT
TAGCGACAGAGAGAGAACAGTCAACTTCTCGTTAACTGACGCGTACGGGG
GTGTAGTGTCGGCTGATGGTGTCGGCGGAGTGAATGGAAGCATGCATGAG
AAAGACTCAAAGTACAAAAGCAGGTTTCGCGGAATCAAGCCAATGAAGTG
TTCAACGCTCGGCAAAGAAGTGGGAGTGAAGCACGTGCATTTTTGGAGTC
TCGATGTAGAAGGGCACGAAATCGAGGTGCTGCGTGGTTTCGACTGGAAG
AAAACTCGTGTGGATGTGATTGTGACGGAGAACCGAGAGAAGGAAATAAA
GGAGATTCTATCGAAGCAAGGATACGAGCAAGTAAGCAAAGTACTCAAGG
ATGATATCTGGATCCGCAACGGGAGCGGATTTGAGGTAAGCGAGCGCATG
AAGCAGTTAATGAGAAGCTTTGACAGATCTAGCTACCGATTCTTGGGGTT
TTAG
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