Ggra1283.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1283.t1
Unique Name	Ggra1283.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	636

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000235_pilon	contig	tig00000235_pilon:21951..23858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1283	Ggra1283	Gracilaria gracilis GNS1m male	gene	tig00000235_pilon 21951..23858 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1283.t1.start1	Ggra1283.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000235_pilon 21951..21953 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1283.t1.CDS1	Ggra1283.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000235_pilon 21951..23858 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1283.t1.exon1	Ggra1283.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000235_pilon 21951..23858 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1283.t1.stop1	Ggra1283.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000235_pilon 23856..23858 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1283.t1	Ggra1283.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000235_pilon 21951..23858 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000235_pilon:21951..23858+
coding sequence from alignment at tig00000235_pilon:21951..23858+

mRNA sequence

>Ggra1283.t1 ID=Ggra1283.t1|Name=Ggra1283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp
MIRLTWFWLIAVLVALIGSNLVFGRALLPVPRTRKQGLDYSTLIQYESRL
EVSYRATASAEQQPDYFTNNTLEKLFKDNRVTARIDSVVLDGNTLSMSGV
VTYQMVTTHSNITDEVDMKGKSGSSALILQAELDGETFLLKWMKRSCACS
TDATFVITSTNEGDDVWVAGSTTGIDKGEKGISGPGMALMRYNSQGKQLF
LRQQGGVGEHYDWVGYTSSANNGTRNVTLVGTVNSERFEGLQKALVAQIA
NETGDIVKTGLITDGENVVSETFWSAESEGSTLYVVGKRSVQTGLTPTST
MTLTKMDAEKMEITGRRDFENELQRAIVLCTDSQGVTASYVARNNNQGHV
IVEEMNDKLVIANRSKVKIQRDLEYQKAVKSVMVACDSTRSPPVLLMSTA
EALNRSAPDWEEKRKLNNHRPALLTVEDNTFMSISQSQRSTEWLASGMAG
RSGSSNWLVFGKTGNGKPLLSSGMVLKPKKAAAIPSPSPKITTTGPECIG
EETTISGRSVRDIINAHDTMRLQRHPLRRRLLADTLCRRAGADVLCATAQ
HVVRVGDETLFMSEWCARTGDCQLRRQRVLNFKAACGVMLPPAEDGARLT
MHSGDGDLAGALVRAECRMQSRSAAHRTWWWLSTL*

spliced messenger RNA

>Ggra1283.t1 ID=Ggra1283.t1|Name=Ggra1283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1908bp|location=Sequence derived from alignment at tig00000235_pilon:21951..23858+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGCCTCACTTGGTTTTGGTTAATCGCCGTATTGGTCGCACTCAT
CGGAAGTAACCTGGTCTTTGGAAGAGCACTCCTGCCAGTTCCACGAACCC
GAAAGCAGGGACTTGATTACTCAACTCTAATTCAATATGAAAGCCGCTTA
GAAGTGAGCTACAGAGCTACAGCTTCTGCAGAACAGCAACCCGATTACTT
CACTAACAATACTTTGGAGAAGCTGTTCAAAGACAACAGGGTAACTGCTA
GAATCGATTCTGTCGTTCTCGATGGAAATACGCTCAGCATGAGCGGGGTA
GTAACATACCAAATGGTGACCACCCATTCAAATATAACGGATGAAGTAGA
TATGAAGGGCAAATCTGGAAGCTCTGCGCTCATACTTCAGGCCGAACTGG
ATGGCGAAACCTTTCTTCTCAAATGGATGAAACGCTCATGTGCGTGTTCC
ACAGACGCGACGTTTGTGATTACCAGCACAAATGAAGGAGATGACGTGTG
GGTGGCGGGCAGCACTACTGGAATAGACAAAGGAGAGAAAGGAATCTCTG
GACCAGGAATGGCGTTGATGCGATACAACTCGCAGGGGAAACAGTTGTTT
CTGCGACAACAAGGAGGGGTCGGAGAGCATTATGACTGGGTGGGGTATAC
GTCGAGCGCAAACAACGGCACCAGGAACGTGACACTCGTTGGAACCGTGA
ACAGCGAGAGGTTCGAAGGGCTCCAAAAAGCTCTGGTGGCTCAGATTGCG
AACGAGACTGGGGATATCGTGAAGACGGGTCTAATCACTGACGGGGAAAA
CGTGGTGAGCGAAACGTTCTGGAGCGCTGAGAGCGAGGGCAGTACGCTGT
ACGTGGTCGGAAAGCGCAGCGTGCAAACCGGGTTGACGCCGACCTCGACG
ATGACGCTGACCAAGATGGACGCAGAGAAGATGGAAATAACAGGTAGGCG
CGACTTTGAAAACGAGTTGCAAAGAGCCATCGTTCTATGCACGGACAGCC
AAGGCGTGACGGCGAGCTATGTGGCTCGAAACAACAATCAAGGGCACGTG
ATTGTGGAGGAGATGAACGATAAGCTGGTGATCGCAAACAGAAGCAAGGT
GAAGATCCAACGCGACCTGGAATATCAGAAAGCAGTGAAGTCGGTGATGG
TTGCATGTGACTCAACCAGGAGTCCACCCGTGCTGCTGATGAGCACGGCA
GAAGCGTTGAATCGAAGCGCACCAGACTGGGAGGAGAAACGAAAGCTGAA
CAACCATCGACCAGCGCTGTTGACGGTGGAGGACAACACGTTCATGTCGA
TCTCGCAGTCTCAACGCAGCACGGAATGGCTCGCATCCGGAATGGCAGGC
AGGAGCGGCAGCTCAAACTGGCTCGTCTTCGGCAAAACCGGTAACGGAAA
GCCGTTACTATCTAGCGGCATGGTGTTGAAACCGAAGAAAGCAGCAGCAA
TACCGTCACCATCGCCCAAGATCACCACAACCGGCCCGGAGTGCATTGGC
GAAGAAACAACGATCTCAGGACGGTCCGTGCGAGATATAATCAACGCACA
CGACACTATGCGGCTACAACGTCACCCTCTTCGACGGCGCCTGCTCGCAG
ACACGCTTTGTCGACGCGCCGGTGCGGATGTTCTGTGCGCGACGGCACAA
CATGTGGTGCGCGTGGGCGACGAAACGCTGTTCATGAGCGAGTGGTGCGC
GCGCACTGGCGACTGCCAGCTTCGCCGTCAGCGCGTGCTTAACTTCAAGg
cggcgtgcggcgtgatgctgccgccggctgaggacggcgcgcggTTGACG
ATGCACTCCGGCGATGGCGACTTAGCCGGCGCGCTTGTTCGCGCCGAGTG
CCGTATGCAGAGTCGCTCCGCTGCGCATCGCACATGGTGGTGGCTCAGCA
CGCTCTGA

protein sequence of Ggra1283.t1

>Ggra1283.t1 ID=Ggra1283.t1|Name=Ggra1283.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=636bp
MIRLTWFWLIAVLVALIGSNLVFGRALLPVPRTRKQGLDYSTLIQYESRL
EVSYRATASAEQQPDYFTNNTLEKLFKDNRVTARIDSVVLDGNTLSMSGV
VTYQMVTTHSNITDEVDMKGKSGSSALILQAELDGETFLLKWMKRSCACS
TDATFVITSTNEGDDVWVAGSTTGIDKGEKGISGPGMALMRYNSQGKQLF
LRQQGGVGEHYDWVGYTSSANNGTRNVTLVGTVNSERFEGLQKALVAQIA
NETGDIVKTGLITDGENVVSETFWSAESEGSTLYVVGKRSVQTGLTPTST
MTLTKMDAEKMEITGRRDFENELQRAIVLCTDSQGVTASYVARNNNQGHV
IVEEMNDKLVIANRSKVKIQRDLEYQKAVKSVMVACDSTRSPPVLLMSTA
EALNRSAPDWEEKRKLNNHRPALLTVEDNTFMSISQSQRSTEWLASGMAG
RSGSSNWLVFGKTGNGKPLLSSGMVLKPKKAAAIPSPSPKITTTGPECIG
EETTISGRSVRDIINAHDTMRLQRHPLRRRLLADTLCRRAGADVLCATAQ
HVVRVGDETLFMSEWCARTGDCQLRRQRVLNFKAACGVMLPPAEDGARLT
MHSGDGDLAGALVRAECRMQSRSAAHRTWWWLSTL*

mRNA from alignment at tig00000235_pilon:21951..23858+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1283.t1 ID=Ggra1283.t1|Name=Ggra1283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1908bp|location=Sequence derived from alignment at tig00000235_pilon:21951..23858+ (Gracilaria gracilis GNS1m male)
ATGATACGCCTCACTTGGTTTTGGTTAATCGCCGTATTGGTCGCACTCAT
CGGAAGTAACCTGGTCTTTGGAAGAGCACTCCTGCCAGTTCCACGAACCC
GAAAGCAGGGACTTGATTACTCAACTCTAATTCAATATGAAAGCCGCTTA
GAAGTGAGCTACAGAGCTACAGCTTCTGCAGAACAGCAACCCGATTACTT
CACTAACAATACTTTGGAGAAGCTGTTCAAAGACAACAGGGTAACTGCTA
GAATCGATTCTGTCGTTCTCGATGGAAATACGCTCAGCATGAGCGGGGTA
GTAACATACCAAATGGTGACCACCCATTCAAATATAACGGATGAAGTAGA
TATGAAGGGCAAATCTGGAAGCTCTGCGCTCATACTTCAGGCCGAACTGG
ATGGCGAAACCTTTCTTCTCAAATGGATGAAACGCTCATGTGCGTGTTCC
ACAGACGCGACGTTTGTGATTACCAGCACAAATGAAGGAGATGACGTGTG
GGTGGCGGGCAGCACTACTGGAATAGACAAAGGAGAGAAAGGAATCTCTG
GACCAGGAATGGCGTTGATGCGATACAACTCGCAGGGGAAACAGTTGTTT
CTGCGACAACAAGGAGGGGTCGGAGAGCATTATGACTGGGTGGGGTATAC
GTCGAGCGCAAACAACGGCACCAGGAACGTGACACTCGTTGGAACCGTGA
ACAGCGAGAGGTTCGAAGGGCTCCAAAAAGCTCTGGTGGCTCAGATTGCG
AACGAGACTGGGGATATCGTGAAGACGGGTCTAATCACTGACGGGGAAAA
CGTGGTGAGCGAAACGTTCTGGAGCGCTGAGAGCGAGGGCAGTACGCTGT
ACGTGGTCGGAAAGCGCAGCGTGCAAACCGGGTTGACGCCGACCTCGACG
ATGACGCTGACCAAGATGGACGCAGAGAAGATGGAAATAACAGGTAGGCG
CGACTTTGAAAACGAGTTGCAAAGAGCCATCGTTCTATGCACGGACAGCC
AAGGCGTGACGGCGAGCTATGTGGCTCGAAACAACAATCAAGGGCACGTG
ATTGTGGAGGAGATGAACGATAAGCTGGTGATCGCAAACAGAAGCAAGGT
GAAGATCCAACGCGACCTGGAATATCAGAAAGCAGTGAAGTCGGTGATGG
TTGCATGTGACTCAACCAGGAGTCCACCCGTGCTGCTGATGAGCACGGCA
GAAGCGTTGAATCGAAGCGCACCAGACTGGGAGGAGAAACGAAAGCTGAA
CAACCATCGACCAGCGCTGTTGACGGTGGAGGACAACACGTTCATGTCGA
TCTCGCAGTCTCAACGCAGCACGGAATGGCTCGCATCCGGAATGGCAGGC
AGGAGCGGCAGCTCAAACTGGCTCGTCTTCGGCAAAACCGGTAACGGAAA
GCCGTTACTATCTAGCGGCATGGTGTTGAAACCGAAGAAAGCAGCAGCAA
TACCGTCACCATCGCCCAAGATCACCACAACCGGCCCGGAGTGCATTGGC
GAAGAAACAACGATCTCAGGACGGTCCGTGCGAGATATAATCAACGCACA
CGACACTATGCGGCTACAACGTCACCCTCTTCGACGGCGCCTGCTCGCAG
ACACGCTTTGTCGACGCGCCGGTGCGGATGTTCTGTGCGCGACGGCACAA
CATGTGGTGCGCGTGGGCGACGAAACGCTGTTCATGAGCGAGTGGTGCGC
GCGCACTGGCGACTGCCAGCTTCGCCGTCAGCGCGTGCTTAACTTCAAGg
cggcgtgcggcgtgatgctgccgccggctgaggacggcgcgcggTTGACG
ATGCACTCCGGCGATGGCGACTTAGCCGGCGCGCTTGTTCGCGCCGAGTG
CCGTATGCAGAGTCGCTCCGCTGCGCATCGCACATGGTGGTGGCTCAGCA
CGCTCTGA

Coding sequence (CDS) from alignment at tig00000235_pilon:21951..23858+

>Ggra1283.t1 ID=Ggra1283.t1|Name=Ggra1283.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1908bp|location=Sequence derived from alignment at tig00000235_pilon:21951..23858+ (Gracilaria gracilis GNS1m male)
ATGATACGCCTCACTTGGTTTTGGTTAATCGCCGTATTGGTCGCACTCAT
CGGAAGTAACCTGGTCTTTGGAAGAGCACTCCTGCCAGTTCCACGAACCC
GAAAGCAGGGACTTGATTACTCAACTCTAATTCAATATGAAAGCCGCTTA
GAAGTGAGCTACAGAGCTACAGCTTCTGCAGAACAGCAACCCGATTACTT
CACTAACAATACTTTGGAGAAGCTGTTCAAAGACAACAGGGTAACTGCTA
GAATCGATTCTGTCGTTCTCGATGGAAATACGCTCAGCATGAGCGGGGTA
GTAACATACCAAATGGTGACCACCCATTCAAATATAACGGATGAAGTAGA
TATGAAGGGCAAATCTGGAAGCTCTGCGCTCATACTTCAGGCCGAACTGG
ATGGCGAAACCTTTCTTCTCAAATGGATGAAACGCTCATGTGCGTGTTCC
ACAGACGCGACGTTTGTGATTACCAGCACAAATGAAGGAGATGACGTGTG
GGTGGCGGGCAGCACTACTGGAATAGACAAAGGAGAGAAAGGAATCTCTG
GACCAGGAATGGCGTTGATGCGATACAACTCGCAGGGGAAACAGTTGTTT
CTGCGACAACAAGGAGGGGTCGGAGAGCATTATGACTGGGTGGGGTATAC
GTCGAGCGCAAACAACGGCACCAGGAACGTGACACTCGTTGGAACCGTGA
ACAGCGAGAGGTTCGAAGGGCTCCAAAAAGCTCTGGTGGCTCAGATTGCG
AACGAGACTGGGGATATCGTGAAGACGGGTCTAATCACTGACGGGGAAAA
CGTGGTGAGCGAAACGTTCTGGAGCGCTGAGAGCGAGGGCAGTACGCTGT
ACGTGGTCGGAAAGCGCAGCGTGCAAACCGGGTTGACGCCGACCTCGACG
ATGACGCTGACCAAGATGGACGCAGAGAAGATGGAAATAACAGGTAGGCG
CGACTTTGAAAACGAGTTGCAAAGAGCCATCGTTCTATGCACGGACAGCC
AAGGCGTGACGGCGAGCTATGTGGCTCGAAACAACAATCAAGGGCACGTG
ATTGTGGAGGAGATGAACGATAAGCTGGTGATCGCAAACAGAAGCAAGGT
GAAGATCCAACGCGACCTGGAATATCAGAAAGCAGTGAAGTCGGTGATGG
TTGCATGTGACTCAACCAGGAGTCCACCCGTGCTGCTGATGAGCACGGCA
GAAGCGTTGAATCGAAGCGCACCAGACTGGGAGGAGAAACGAAAGCTGAA
CAACCATCGACCAGCGCTGTTGACGGTGGAGGACAACACGTTCATGTCGA
TCTCGCAGTCTCAACGCAGCACGGAATGGCTCGCATCCGGAATGGCAGGC
AGGAGCGGCAGCTCAAACTGGCTCGTCTTCGGCAAAACCGGTAACGGAAA
GCCGTTACTATCTAGCGGCATGGTGTTGAAACCGAAGAAAGCAGCAGCAA
TACCGTCACCATCGCCCAAGATCACCACAACCGGCCCGGAGTGCATTGGC
GAAGAAACAACGATCTCAGGACGGTCCGTGCGAGATATAATCAACGCACA
CGACACTATGCGGCTACAACGTCACCCTCTTCGACGGCGCCTGCTCGCAG
ACACGCTTTGTCGACGCGCCGGTGCGGATGTTCTGTGCGCGACGGCACAA
CATGTGGTGCGCGTGGGCGACGAAACGCTGTTCATGAGCGAGTGGTGCGC
GCGCACTGGCGACTGCCAGCTTCGCCGTCAGCGCGTGCTTAACTTCAAGg
cggcgtgcggcgtgatgctgccgccggctgaggacggcgcgcggTTGACG
ATGCACTCCGGCGATGGCGACTTAGCCGGCGCGCTTGTTCGCGCCGAGTG
CCGTATGCAGAGTCGCTCCGCTGCGCATCGCACATGGTGGTGGCTCAGCA
CGCTCTGA