Ggra1282.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1282.t1
Unique NameGgra1282.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:17900..19003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue4.45e-38
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1282Ggra1282Gracilaria gracilis GNS1m malegenetig00000235_pilon 17900..19003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1282.t1.stop1Ggra1282.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 17900..17902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1282.t1.CDS1Ggra1282.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 17900..19003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1282.t1.exon1Ggra1282.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 17900..19003 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1282.t1.start1Ggra1282.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 19001..19003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1282.t1Ggra1282.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 17900..19003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1282.t1 ID=Ggra1282.t1|Name=Ggra1282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MARLAYAIQISPANYHLLPRLMRALYDQDNYYALHFDSKIPASDAKQTLL
NVWNALQAAGISYRRENVVVLKPEIVTYRGVTMTLNFLSCAEELLSLGDW
DFFINLSGADFPTASQKMMKKLLYRTRNANFVEWKRRRTWASYAKRRLGH
FYVDTGLVTMNSENGSYLTGHDSYDVDASDENAHVRNPIADHVDFTLAKS
SGWFILSQRFTRFLLRSSQSKKLLIALGYSDASDEHYFGSMLWNSEFRES
VVNSNLRNIFFVAPNGSFALGADGKRRRQHPFWVDELDEDGKELMFWRQL
WNEPALFTRKIRGMNGLCERVESEMIGVGDSVDRAKVGAYEVALTKWFSA
LVEGLVSRAAAEEEEER*
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spliced messenger RNA

>Ggra1282.t1 ID=Ggra1282.t1|Name=Ggra1282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000235_pilon:17900..19003- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCCTTGCTTATGCAATTCAGATATCGCCCGCTAACTACCATCT
GCTTCCCCGATTGATGAGAGCTTTGTACGACCAGGACAACTACTACGCTC
TTCACTTTGACAGCAAGATCCCTGCGTCGGACGCAAAACAAACACTCTTG
AACGTATGGAATGCGCTACAAGCTGCCGGTATATCGTATAGACGTGAGAA
CGTTGTTGTTCTTAAACCAGAAATTGTTACCTATAGAGGGGTAACAATGA
CGCTGAACTTTCTCTCTTGCGCAGAGGAGCTTCTCTCGTTGGGTGATTGG
GACTTCTTCATCAATCTTTCTGGTGCCGACTTTCCAACCGCATCCCAGAA
GATGATGAAGAAACTTTTGTATCGAACTCGCAACGCCAATTTTGTTGAAT
GGAAACGACGTCGTACATGGGCATCGTATGCAAAGCGACGACTGGGCCAC
TTTTATGTGGACACGGGTCTGGTCACAATGAATTCAGAAAACGGCAGTTA
CCTCACGGGACACGATAGCTATGATGTTGATGCGTCAGACGAAAACGCTC
ATGTGCGCAATCCAATTGCGGATCACGTCGACTTTACGCTAGCAAAGTCG
TCCGGATGGTTCATTCTGTCGCAACGATTCACAAGATTCCTGCTGAGAAG
CTCACAGTCGAAGAAGCTGTTGATTGCTCTGGGGTATTCAGACGCGTCCG
ACGAGCACTACTTTGGAAGCATGTTATGGAATAGTGAGTTTCGGGAAAGT
GTAGTAAACAGCAACCTGAGAAACATTTTCTTCGTGGCGCCGAATGGAAG
TTTTGCGCTGGGTGCGGACGGTAAGCGACGGAGACAGCATCCGTTCTGGG
TGGATGAGCTGGATGAGGACGGTAAGGAGTTGATGTTTTGGCGGCAGTTG
TGGAATGAACCCGCTTTGTTCACGCGCAAGATACGAGGAATGAATGGGTT
GTGCGAGCGTGTAGAGAGCGAAATGATTGGGGTTGGGGATAGCGTAGACA
GGGCGAAAGTTGGTGCATACGAAGTAGCGTTGACGAAATGGTTTTCAGCG
CTGGTGGAAGGTTTGGTGAGCAGAGCGGCAGCAGAGGAAGAGGAAGAAAG
GTGA
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protein sequence of Ggra1282.t1

>Ggra1282.t1 ID=Ggra1282.t1|Name=Ggra1282.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MARLAYAIQISPANYHLLPRLMRALYDQDNYYALHFDSKIPASDAKQTLL
NVWNALQAAGISYRRENVVVLKPEIVTYRGVTMTLNFLSCAEELLSLGDW
DFFINLSGADFPTASQKMMKKLLYRTRNANFVEWKRRRTWASYAKRRLGH
FYVDTGLVTMNSENGSYLTGHDSYDVDASDENAHVRNPIADHVDFTLAKS
SGWFILSQRFTRFLLRSSQSKKLLIALGYSDASDEHYFGSMLWNSEFRES
VVNSNLRNIFFVAPNGSFALGADGKRRRQHPFWVDELDEDGKELMFWRQL
WNEPALFTRKIRGMNGLCERVESEMIGVGDSVDRAKVGAYEVALTKWFSA
LVEGLVSRAAAEEEEER*
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mRNA from alignment at tig00000235_pilon:17900..19003-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1282.t1 ID=Ggra1282.t1|Name=Ggra1282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000235_pilon:17900..19003- (Gracilaria gracilis GNS1m male)
ATGGCACGCCTTGCTTATGCAATTCAGATATCGCCCGCTAACTACCATCT
GCTTCCCCGATTGATGAGAGCTTTGTACGACCAGGACAACTACTACGCTC
TTCACTTTGACAGCAAGATCCCTGCGTCGGACGCAAAACAAACACTCTTG
AACGTATGGAATGCGCTACAAGCTGCCGGTATATCGTATAGACGTGAGAA
CGTTGTTGTTCTTAAACCAGAAATTGTTACCTATAGAGGGGTAACAATGA
CGCTGAACTTTCTCTCTTGCGCAGAGGAGCTTCTCTCGTTGGGTGATTGG
GACTTCTTCATCAATCTTTCTGGTGCCGACTTTCCAACCGCATCCCAGAA
GATGATGAAGAAACTTTTGTATCGAACTCGCAACGCCAATTTTGTTGAAT
GGAAACGACGTCGTACATGGGCATCGTATGCAAAGCGACGACTGGGCCAC
TTTTATGTGGACACGGGTCTGGTCACAATGAATTCAGAAAACGGCAGTTA
CCTCACGGGACACGATAGCTATGATGTTGATGCGTCAGACGAAAACGCTC
ATGTGCGCAATCCAATTGCGGATCACGTCGACTTTACGCTAGCAAAGTCG
TCCGGATGGTTCATTCTGTCGCAACGATTCACAAGATTCCTGCTGAGAAG
CTCACAGTCGAAGAAGCTGTTGATTGCTCTGGGGTATTCAGACGCGTCCG
ACGAGCACTACTTTGGAAGCATGTTATGGAATAGTGAGTTTCGGGAAAGT
GTAGTAAACAGCAACCTGAGAAACATTTTCTTCGTGGCGCCGAATGGAAG
TTTTGCGCTGGGTGCGGACGGTAAGCGACGGAGACAGCATCCGTTCTGGG
TGGATGAGCTGGATGAGGACGGTAAGGAGTTGATGTTTTGGCGGCAGTTG
TGGAATGAACCCGCTTTGTTCACGCGCAAGATACGAGGAATGAATGGGTT
GTGCGAGCGTGTAGAGAGCGAAATGATTGGGGTTGGGGATAGCGTAGACA
GGGCGAAAGTTGGTGCATACGAAGTAGCGTTGACGAAATGGTTTTCAGCG
CTGGTGGAAGGTTTGGTGAGCAGAGCGGCAGCAGAGGAAGAGGAAGAAAG
GTGA
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Coding sequence (CDS) from alignment at tig00000235_pilon:17900..19003-

>Ggra1282.t1 ID=Ggra1282.t1|Name=Ggra1282.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000235_pilon:17900..19003- (Gracilaria gracilis GNS1m male)
ATGGCACGCCTTGCTTATGCAATTCAGATATCGCCCGCTAACTACCATCT
GCTTCCCCGATTGATGAGAGCTTTGTACGACCAGGACAACTACTACGCTC
TTCACTTTGACAGCAAGATCCCTGCGTCGGACGCAAAACAAACACTCTTG
AACGTATGGAATGCGCTACAAGCTGCCGGTATATCGTATAGACGTGAGAA
CGTTGTTGTTCTTAAACCAGAAATTGTTACCTATAGAGGGGTAACAATGA
CGCTGAACTTTCTCTCTTGCGCAGAGGAGCTTCTCTCGTTGGGTGATTGG
GACTTCTTCATCAATCTTTCTGGTGCCGACTTTCCAACCGCATCCCAGAA
GATGATGAAGAAACTTTTGTATCGAACTCGCAACGCCAATTTTGTTGAAT
GGAAACGACGTCGTACATGGGCATCGTATGCAAAGCGACGACTGGGCCAC
TTTTATGTGGACACGGGTCTGGTCACAATGAATTCAGAAAACGGCAGTTA
CCTCACGGGACACGATAGCTATGATGTTGATGCGTCAGACGAAAACGCTC
ATGTGCGCAATCCAATTGCGGATCACGTCGACTTTACGCTAGCAAAGTCG
TCCGGATGGTTCATTCTGTCGCAACGATTCACAAGATTCCTGCTGAGAAG
CTCACAGTCGAAGAAGCTGTTGATTGCTCTGGGGTATTCAGACGCGTCCG
ACGAGCACTACTTTGGAAGCATGTTATGGAATAGTGAGTTTCGGGAAAGT
GTAGTAAACAGCAACCTGAGAAACATTTTCTTCGTGGCGCCGAATGGAAG
TTTTGCGCTGGGTGCGGACGGTAAGCGACGGAGACAGCATCCGTTCTGGG
TGGATGAGCTGGATGAGGACGGTAAGGAGTTGATGTTTTGGCGGCAGTTG
TGGAATGAACCCGCTTTGTTCACGCGCAAGATACGAGGAATGAATGGGTT
GTGCGAGCGTGTAGAGAGCGAAATGATTGGGGTTGGGGATAGCGTAGACA
GGGCGAAAGTTGGTGCATACGAAGTAGCGTTGACGAAATGGTTTTCAGCG
CTGGTGGAAGGTTTGGTGAGCAGAGCGGCAGCAGAGGAAGAGGAAGAAAG
GTGA
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