Ggra1281.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1281.t1
Unique NameGgra1281.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:16293..17687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708507.1
PFAMsNucleotid_trans
Max annot lvl2759|Eukaryota
KEGG koko:K20892
Evalue1.99e-15
EggNOG OGs2CMQE@1|root,2QRDX@2759|Eukaryota
Descriptiontransferase activity, transferring glycosyl groups
COG categoryS
CAZyGT77
BRITEko00000,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1281Ggra1281Gracilaria gracilis GNS1m malegenetig00000235_pilon 16293..17687 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1281.t1.start1Ggra1281.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 16293..16295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1281.t1.CDS1Ggra1281.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 16293..17687 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1281.t1.exon1Ggra1281.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 16293..17687 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1281.t1.stop1Ggra1281.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 17685..17687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1281.t1Ggra1281.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 16293..17687 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1281.t1 ID=Ggra1281.t1|Name=Ggra1281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MKTRANSGGDGGGSSSGSSGSSGSSGSSGSTKRSAAWTGARKRRRAVLRR
RVAAAAALLICAALALALLLLAARGGGSQLRARGARARVQRAAASVALRL
PHSARRVVLVTAVNFAFRHYALNLACSLARAGAPPDRLLVFALDERARRF
AAAAGLSTVALPLHAAAAVADQREASFGSARFNLLSKRKLAAVKAVLDAG
LDVLFTDADVVWCRHAFANVARLLDRPSPDLLVQTAWPRSLLNSGFYYAR
SNAATRALFGALLAFPHDSENDQVVFNRVLCNPNFGGSVIANLTAQRLQE
HERDHLTYKRGARPLGCRWRQVTAHVLPPHLFPTGGEIVQRHKLFHLPRR
RIIDMCHRGSPFVLHNNCILSNKKLARFIVKGIWYVNPAVMDVHSQHHAH
DDALHNDHVPADHDDGAHFDLTDEHHWQRVCGEPVPPTYEMRRRCGANKC
GHDGDVHRFPQMLA*
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spliced messenger RNA

>Ggra1281.t1 ID=Ggra1281.t1|Name=Ggra1281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000235_pilon:16293..17687+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACGAGGGCGAACAgcggcggcgacggcggcggcAgcagcagcgg
cagcagcggcagcagcggcagcagcggcagcagcggcagcaCCAAGCGCA
GCGCGGCGTGGACGGGCGCGAGAAAACGGCGGCGCGCTGTGCTACGGCGG
CGCGTAGCGGCGGCGGCAGCGCTGCTGATATGCGCCGCGCTGGCGCTGGC
GCTGCTGCTGCTGGCGGCGCGCGGCGGCGGCTCGCAGCTGCGCGCGCGTG
GCGCGCGCGCGCGCGTGCAGCGCGCCGCCGCCAGCGTCGCGCTGCGGCTG
CCGCACTCGGCGCGCCGTGTGGTGCTGGTCACCGCCGTCAACTTTGCGTT
CCGCCACTACGCGCTCAACTTGGCGTGCTCGCTGGCGCGCGCCGGCGCGC
CGCCCGACCGCCTGCTCGTCTTCGCGCTGGACGAGCGCGCGCGTCGCTTC
GCGGCCGCCGCGGGCCTGTCCACCGTCGCGCTGCCGCTGCACGCCGCCGC
CGCCGTCGCCGATCAGCGCGAGGCGTCGTTCGGCTCCGCGCGCTTCAACC
TGCTGTCCAAGCGGAAGCTCGCCGCCGTCAAGGCCGTGCTGGACGCCGGC
CTGGACGTGCTCTTCACCGACGCCGACGTTGTGTGGTGCCGCCACGCCTT
TGCTAACGTCGCGCGCTTGTTGGATCGCCCGTCGCCAGACCTCTTGGTGC
AGACCGCCTGGCCGAGGAGTCTGCTCAACTCTGGTTTCTACTACGCTCGC
TCCAACGCCGCCACGCGCGCCCTGTTTGGCGCGCTGCTCGCCTTTCCGCA
CGACTCGGAGAACGACCAGGTTGTGTTCAATCGCGTCTTGTGCAACCCCA
ACTTTGGCGGCTCTGTCATCGCCAACCTCACCGCCCAGCGCTTGCAGGAG
CACGAGCGCGATCACCTCACCTACAAGCGCGGCGCGCGCCCGCTGGGCTG
TCGCTGGCGTCAGGTCACTGCGCACGTGCTGCCGCCGCACCTCTTTCCTA
CCGGCGGTGAGATTGTGCAACGCCACAAGCTCTTTCACTTGCCGAGGAGG
CGCATCATCGACATGTGCCACCGTGGCTCCCCGTTCGTGCTGCACAACAA
CTGCATCCTCAGCAATAAGAAGCTCGCCAGGTTTATTGTCAAGGGCATTT
GGTACGTCAACCCGGCCGTCATGGATGTTCACTCTCAACACCATGCGCAT
GACGATGCCCTTCACAATGATCATGTGCCCGCCGATCACGATGATGGCGC
GCACTTCGACCTCACCGATGAGCACCACTGGCAGCGCGTGTGCGGCGAAC
CTGTGCCGCCCACGTATGAAATGAGGCGCCGATGCGGCGCCAACAAGTGC
GGTCATGACGGTGATGTTCATCGCTTCCCACAAATGCTCGCGTGA
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protein sequence of Ggra1281.t1

>Ggra1281.t1 ID=Ggra1281.t1|Name=Ggra1281.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MKTRANSGGDGGGSSSGSSGSSGSSGSSGSTKRSAAWTGARKRRRAVLRR
RVAAAAALLICAALALALLLLAARGGGSQLRARGARARVQRAAASVALRL
PHSARRVVLVTAVNFAFRHYALNLACSLARAGAPPDRLLVFALDERARRF
AAAAGLSTVALPLHAAAAVADQREASFGSARFNLLSKRKLAAVKAVLDAG
LDVLFTDADVVWCRHAFANVARLLDRPSPDLLVQTAWPRSLLNSGFYYAR
SNAATRALFGALLAFPHDSENDQVVFNRVLCNPNFGGSVIANLTAQRLQE
HERDHLTYKRGARPLGCRWRQVTAHVLPPHLFPTGGEIVQRHKLFHLPRR
RIIDMCHRGSPFVLHNNCILSNKKLARFIVKGIWYVNPAVMDVHSQHHAH
DDALHNDHVPADHDDGAHFDLTDEHHWQRVCGEPVPPTYEMRRRCGANKC
GHDGDVHRFPQMLA*
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mRNA from alignment at tig00000235_pilon:16293..17687+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1281.t1 ID=Ggra1281.t1|Name=Ggra1281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000235_pilon:16293..17687+ (Gracilaria gracilis GNS1m male)
ATGAAGACGAGGGCGAACAgcggcggcgacggcggcggcAgcagcagcgg
cagcagcggcagcagcggcagcagcggcagcagcggcagcaCCAAGCGCA
GCGCGGCGTGGACGGGCGCGAGAAAACGGCGGCGCGCTGTGCTACGGCGG
CGCGTAGCGGCGGCGGCAGCGCTGCTGATATGCGCCGCGCTGGCGCTGGC
GCTGCTGCTGCTGGCGGCGCGCGGCGGCGGCTCGCAGCTGCGCGCGCGTG
GCGCGCGCGCGCGCGTGCAGCGCGCCGCCGCCAGCGTCGCGCTGCGGCTG
CCGCACTCGGCGCGCCGTGTGGTGCTGGTCACCGCCGTCAACTTTGCGTT
CCGCCACTACGCGCTCAACTTGGCGTGCTCGCTGGCGCGCGCCGGCGCGC
CGCCCGACCGCCTGCTCGTCTTCGCGCTGGACGAGCGCGCGCGTCGCTTC
GCGGCCGCCGCGGGCCTGTCCACCGTCGCGCTGCCGCTGCACGCCGCCGC
CGCCGTCGCCGATCAGCGCGAGGCGTCGTTCGGCTCCGCGCGCTTCAACC
TGCTGTCCAAGCGGAAGCTCGCCGCCGTCAAGGCCGTGCTGGACGCCGGC
CTGGACGTGCTCTTCACCGACGCCGACGTTGTGTGGTGCCGCCACGCCTT
TGCTAACGTCGCGCGCTTGTTGGATCGCCCGTCGCCAGACCTCTTGGTGC
AGACCGCCTGGCCGAGGAGTCTGCTCAACTCTGGTTTCTACTACGCTCGC
TCCAACGCCGCCACGCGCGCCCTGTTTGGCGCGCTGCTCGCCTTTCCGCA
CGACTCGGAGAACGACCAGGTTGTGTTCAATCGCGTCTTGTGCAACCCCA
ACTTTGGCGGCTCTGTCATCGCCAACCTCACCGCCCAGCGCTTGCAGGAG
CACGAGCGCGATCACCTCACCTACAAGCGCGGCGCGCGCCCGCTGGGCTG
TCGCTGGCGTCAGGTCACTGCGCACGTGCTGCCGCCGCACCTCTTTCCTA
CCGGCGGTGAGATTGTGCAACGCCACAAGCTCTTTCACTTGCCGAGGAGG
CGCATCATCGACATGTGCCACCGTGGCTCCCCGTTCGTGCTGCACAACAA
CTGCATCCTCAGCAATAAGAAGCTCGCCAGGTTTATTGTCAAGGGCATTT
GGTACGTCAACCCGGCCGTCATGGATGTTCACTCTCAACACCATGCGCAT
GACGATGCCCTTCACAATGATCATGTGCCCGCCGATCACGATGATGGCGC
GCACTTCGACCTCACCGATGAGCACCACTGGCAGCGCGTGTGCGGCGAAC
CTGTGCCGCCCACGTATGAAATGAGGCGCCGATGCGGCGCCAACAAGTGC
GGTCATGACGGTGATGTTCATCGCTTCCCACAAATGCTCGCGTGA
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Coding sequence (CDS) from alignment at tig00000235_pilon:16293..17687+

>Ggra1281.t1 ID=Ggra1281.t1|Name=Ggra1281.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000235_pilon:16293..17687+ (Gracilaria gracilis GNS1m male)
ATGAAGACGAGGGCGAACAgcggcggcgacggcggcggcAgcagcagcgg
cagcagcggcagcagcggcagcagcggcagcagcggcagcaCCAAGCGCA
GCGCGGCGTGGACGGGCGCGAGAAAACGGCGGCGCGCTGTGCTACGGCGG
CGCGTAGCGGCGGCGGCAGCGCTGCTGATATGCGCCGCGCTGGCGCTGGC
GCTGCTGCTGCTGGCGGCGCGCGGCGGCGGCTCGCAGCTGCGCGCGCGTG
GCGCGCGCGCGCGCGTGCAGCGCGCCGCCGCCAGCGTCGCGCTGCGGCTG
CCGCACTCGGCGCGCCGTGTGGTGCTGGTCACCGCCGTCAACTTTGCGTT
CCGCCACTACGCGCTCAACTTGGCGTGCTCGCTGGCGCGCGCCGGCGCGC
CGCCCGACCGCCTGCTCGTCTTCGCGCTGGACGAGCGCGCGCGTCGCTTC
GCGGCCGCCGCGGGCCTGTCCACCGTCGCGCTGCCGCTGCACGCCGCCGC
CGCCGTCGCCGATCAGCGCGAGGCGTCGTTCGGCTCCGCGCGCTTCAACC
TGCTGTCCAAGCGGAAGCTCGCCGCCGTCAAGGCCGTGCTGGACGCCGGC
CTGGACGTGCTCTTCACCGACGCCGACGTTGTGTGGTGCCGCCACGCCTT
TGCTAACGTCGCGCGCTTGTTGGATCGCCCGTCGCCAGACCTCTTGGTGC
AGACCGCCTGGCCGAGGAGTCTGCTCAACTCTGGTTTCTACTACGCTCGC
TCCAACGCCGCCACGCGCGCCCTGTTTGGCGCGCTGCTCGCCTTTCCGCA
CGACTCGGAGAACGACCAGGTTGTGTTCAATCGCGTCTTGTGCAACCCCA
ACTTTGGCGGCTCTGTCATCGCCAACCTCACCGCCCAGCGCTTGCAGGAG
CACGAGCGCGATCACCTCACCTACAAGCGCGGCGCGCGCCCGCTGGGCTG
TCGCTGGCGTCAGGTCACTGCGCACGTGCTGCCGCCGCACCTCTTTCCTA
CCGGCGGTGAGATTGTGCAACGCCACAAGCTCTTTCACTTGCCGAGGAGG
CGCATCATCGACATGTGCCACCGTGGCTCCCCGTTCGTGCTGCACAACAA
CTGCATCCTCAGCAATAAGAAGCTCGCCAGGTTTATTGTCAAGGGCATTT
GGTACGTCAACCCGGCCGTCATGGATGTTCACTCTCAACACCATGCGCAT
GACGATGCCCTTCACAATGATCATGTGCCCGCCGATCACGATGATGGCGC
GCACTTCGACCTCACCGATGAGCACCACTGGCAGCGCGTGTGCGGCGAAC
CTGTGCCGCCCACGTATGAAATGAGGCGCCGATGCGGCGCCAACAAGTGC
GGTCATGACGGTGATGTTCATCGCTTCCCACAAATGCTCGCGTGA
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