Ggra1279.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1279.t1
Unique NameGgra1279.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:14605..15075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1279Ggra1279Gracilaria gracilis GNS1m malegenetig00000235_pilon 14605..15363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1279.t1.stop1Ggra1279.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 14605..14607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1279.t1.CDS1Ggra1279.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 14605..15075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1279.t1.exon1Ggra1279.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 14605..15075 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1279.t1.start1Ggra1279.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 15073..15075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1279.t1Ggra1279.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 14605..15075 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1279.t1 ID=Ggra1279.t1|Name=Ggra1279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MHSPPRTPFPSGPSFAPTPPPPPPPPAAAPPRALDKRELRRMKNRISAAR
SRQRKSDTFDSLTRELAEAKQVINALTVQLDRRNEAVVVAVPHDLRQVLG
RDYVSVDFLMDVLRGFVARGGGRDSGSGGGTAGGGAQDAAARSGATVSTR
HAPLLN*
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spliced messenger RNA

>Ggra1279.t1 ID=Ggra1279.t1|Name=Ggra1279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000235_pilon:14605..15075- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGCCGCCGCGCACGCCCTTCCCGTCCGGGCCGTCGTTCGCGCC
CACGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCCGCGCCGCCGCGCGCGC
TGGACAAGCGCGAGCTGCGCCGTATGAAGAACCGTATCTCGGCGGCGCGC
TCGCGCCAACGGAAGAGCGACACCTTTGACAGCCTCACGCGCGAGCTGGC
AGAGGCCAAGCAGGTCATCAACGCGCTCACCGTGCAGCTGGACCGTCGTA
ACGAGGCCGTGGTCGTGGCCGTGCCGCACGACCTGCGCCAGGTGCTGGGC
CGCGACTACGTGTCGGTGGACTTTCTCATGGACGTGCTGCGCGGGTTTGT
GGCGCGCGGCGGAGGTCGTGACAGCGGCAGCGGCGGCGGCACCGCCGGTG
GTGGCGCGCAGGACGCTGCCGCCCGTAGCGGCGCCACTGTGTCCACGCGC
CACGCGCCGCTTTTGAATTAA
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protein sequence of Ggra1279.t1

>Ggra1279.t1 ID=Ggra1279.t1|Name=Ggra1279.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MHSPPRTPFPSGPSFAPTPPPPPPPPAAAPPRALDKRELRRMKNRISAAR
SRQRKSDTFDSLTRELAEAKQVINALTVQLDRRNEAVVVAVPHDLRQVLG
RDYVSVDFLMDVLRGFVARGGGRDSGSGGGTAGGGAQDAAARSGATVSTR
HAPLLN*
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mRNA from alignment at tig00000235_pilon:14605..15075-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1279.t1 ID=Ggra1279.t1|Name=Ggra1279.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000235_pilon:14605..15075- (Gracilaria gracilis GNS1m male)
ATGCACTCGCCGCCGCGCACGCCCTTCCCGTCCGGGCCGTCGTTCGCGCC
CACGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCCGCGCCGCCGCGCGCGC
TGGACAAGCGCGAGCTGCGCCGTATGAAGAACCGTATCTCGGCGGCGCGC
TCGCGCCAACGGAAGAGCGACACCTTTGACAGCCTCACGCGCGAGCTGGC
AGAGGCCAAGCAGGTCATCAACGCGCTCACCGTGCAGCTGGACCGTCGTA
ACGAGGCCGTGGTCGTGGCCGTGCCGCACGACCTGCGCCAGGTGCTGGGC
CGCGACTACGTGTCGGTGGACTTTCTCATGGACGTGCTGCGCGGGTTTGT
GGCGCGCGGCGGAGGTCGTGACAGCGGCAGCGGCGGCGGCACCGCCGGTG
GTGGCGCGCAGGACGCTGCCGCCCGTAGCGGCGCCACTGTGTCCACGCGC
CACGCGCCGCTTTTGAATTAA
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Coding sequence (CDS) from alignment at tig00000235_pilon:14605..15075-

>Ggra1279.t1 ID=Ggra1279.t1|Name=Ggra1279.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000235_pilon:14605..15075- (Gracilaria gracilis GNS1m male)
ATGCACTCGCCGCCGCGCACGCCCTTCCCGTCCGGGCCGTCGTTCGCGCC
CACGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCCGCGCCGCCGCGCGCGC
TGGACAAGCGCGAGCTGCGCCGTATGAAGAACCGTATCTCGGCGGCGCGC
TCGCGCCAACGGAAGAGCGACACCTTTGACAGCCTCACGCGCGAGCTGGC
AGAGGCCAAGCAGGTCATCAACGCGCTCACCGTGCAGCTGGACCGTCGTA
ACGAGGCCGTGGTCGTGGCCGTGCCGCACGACCTGCGCCAGGTGCTGGGC
CGCGACTACGTGTCGGTGGACTTTCTCATGGACGTGCTGCGCGGGTTTGT
GGCGCGCGGCGGAGGTCGTGACAGCGGCAGCGGCGGCGGCACCGCCGGTG
GTGGCGCGCAGGACGCTGCCGCCCGTAGCGGCGCCACTGTGTCCACGCGC
CACGCGCCGCTTTTGAATTAA
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