Ggra1268.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1268.t1
Unique Name	Ggra1268.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	478

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000208_pilon	contig	tig00000208_pilon:138089..139522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1268	Ggra1268	Gracilaria gracilis GNS1m male	gene	tig00000208_pilon 138089..139522 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1268.t1.start1	Ggra1268.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000208_pilon 138089..138091 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1268.t1.CDS1	Ggra1268.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000208_pilon 138089..139522 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1268.t1.exon1	Ggra1268.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000208_pilon 138089..139522 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1268.t1.stop1	Ggra1268.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000208_pilon 139520..139522 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1268.t1	Ggra1268.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000208_pilon 138089..139522 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000208_pilon:138089..139522+
coding sequence from alignment at tig00000208_pilon:138089..139522+

mRNA sequence

>Ggra1268.t1 ID=Ggra1268.t1|Name=Ggra1268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MAPKGGGIYGHLPGGSEKPIQVLVDKREIASRKVLLGKTCETQAWRAAYA
GLVSGYGYGLFTHGMTSREYSEISNYLERCKGVEDVFSGLYAEHTMWNLG
DRYNGYNGTAYLVRLGEREDLCEPLEGLIVSQQYILCRILEQGIVGLGYP
EEVEFEKAGDLKIVITVGCRFKIFIGKLCGMEDYIRVVDGEMKSLEIEDT
RSFIHRKRHGWPLRGRCACESGWGRSVRMSVEDKKTGSYVVYTLLPTSSG
GFYCEVVEEVGVYVTVTEKIVTGFSGGTNSTGRYYEYVAPANPFDRNESI
TYWMSIGSSLVVSSTCAVRFSGHPAYDVQVFGYLLRARSVSDKEVEFLCR
PNVGSMEDLIELGKTTNVLYVPGKRDMRFVKWKRFNAQNDNARAAMVGTI
PSIMEVELVGEYRKQLVSKAYNGLQAGQSLQDVYRSNPVLKMVGRSGCRH
YEVDDEEFERRMWLRGFRGYRVYNIIC*

spliced messenger RNA

>Ggra1268.t1 ID=Ggra1268.t1|Name=Ggra1268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000208_pilon:138089..139522+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAAGGAGGGGGAATTTATGGTCATCTCCCTGGTGGAAGTGA
GAAGCCGATTCAAGTGCTGGTAGATAAACGCGAAATTGCTTCGAGAAAGG
TTTTGTTGGGAAAAACCTGCGAGACACAGGCTTGGAGGGCGGCGTATGCA
GGGCTGGTATCTGGGTATGGTTATGGCCTTTTCACACATGGAATGACTTC
AAGGGAGTACTCTGAAATATCGAATTATCTCGAACGCTGCAAAGGGGTGG
AGGATGTGTTCAGTGGTCTATATGCAGAACATACAATGTGGAATTTGGGA
GATCGATACAATGGATATAACGGAACAGCGTATCTCGTTCGTTTGGGTGA
AAGGGAAGACTTGTGTGAGCCGCTGGAGGGTCTTATCGTATCGCAACAAT
ACATTCTTTGTCGAATACTTGAGCAGGGAATTGTGGGGTTGGGGTATCCG
GAGGAGGTGGAGTTCGAGAAGGCAGGCGATCTGAAGATTGTCATCACGGT
TGGATGTAGGTTTAAAATCTTTATTGGGAAGCTATGTGGAATGGAGGATT
ACATTCGAGTGGTGGATGGTGAAATGAAGAGTTTGGAGATTGAAGATACT
CGTAGCTTTATCCATAGGAAGCGGCATGGCTGGCCTCTTCGTGGAAGGTG
TGCATGTGAGAGCGGATGGGGGAGAAGCGTGAGGATGTCCGTCGAAGACA
AGAAGACCGGATCGTACGTTGTGTATACATTGCTCCCGACATCGAGTGGT
GGATTCTATTGTGAAGTTGTTGAAGAAGTCGGTGTGTATGTTACAGTGAC
TGAAAAGATTGTCACTGGATTCAGTGGGGGCACCAACTCGACCGGGAGAT
ACTATGAGTACGTTGCGCCGGCCAATCCCTTCGATAGAAACGAGTCCATC
ACGTATTGGATGAGTATCGGAAGCTCACTGGTGGTGTCCAGTACATGTGC
CGTACGCTTCAGCGGCCACCCAGCCTACGATGTTCAAGTGTTCGGGTACT
TGTTAAGAGCAAGGTCAGTGAGCGACAAAGAAGTGGAGTTCCTGTGCCGA
CCAAACGTTGGTAGTATGGAAGACTTGATCGAGTTGGGGAAGACAACCAA
TGTTCTTTACGTGCCAGGGAAGAGAGATATGCGTTTCGTGAAGTGGAAAA
GATTCAATGCCCAGAACGACAACGCCAGAGCGGCTATGGTTGGGACAATA
CCGTCCATAATGGAAGTAGAATTGGTGGGCGAGTATCGGAAGCAGCTTGT
GTCTAAGGCGTACAATGGGCTTCAAGCAGGTCAGTCGCTGCAAGATGTGT
ACCGATCAAACCCTGTTTTGAAAATGGTGGGGAGGTCCGGATGTCGCCAC
TACGAAGTTGATGACGAGGAGTTTGAACGACGCATGTGGCTTAGGGGTTt
taggggttatcgcgtctataatattatatgttag

protein sequence of Ggra1268.t1

>Ggra1268.t1 ID=Ggra1268.t1|Name=Ggra1268.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MAPKGGGIYGHLPGGSEKPIQVLVDKREIASRKVLLGKTCETQAWRAAYA
GLVSGYGYGLFTHGMTSREYSEISNYLERCKGVEDVFSGLYAEHTMWNLG
DRYNGYNGTAYLVRLGEREDLCEPLEGLIVSQQYILCRILEQGIVGLGYP
EEVEFEKAGDLKIVITVGCRFKIFIGKLCGMEDYIRVVDGEMKSLEIEDT
RSFIHRKRHGWPLRGRCACESGWGRSVRMSVEDKKTGSYVVYTLLPTSSG
GFYCEVVEEVGVYVTVTEKIVTGFSGGTNSTGRYYEYVAPANPFDRNESI
TYWMSIGSSLVVSSTCAVRFSGHPAYDVQVFGYLLRARSVSDKEVEFLCR
PNVGSMEDLIELGKTTNVLYVPGKRDMRFVKWKRFNAQNDNARAAMVGTI
PSIMEVELVGEYRKQLVSKAYNGLQAGQSLQDVYRSNPVLKMVGRSGCRH
YEVDDEEFERRMWLRGFRGYRVYNIIC*

mRNA from alignment at tig00000208_pilon:138089..139522+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1268.t1 ID=Ggra1268.t1|Name=Ggra1268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000208_pilon:138089..139522+ (Gracilaria gracilis GNS1m male)
ATGGCTCCCAAAGGAGGGGGAATTTATGGTCATCTCCCTGGTGGAAGTGA
GAAGCCGATTCAAGTGCTGGTAGATAAACGCGAAATTGCTTCGAGAAAGG
TTTTGTTGGGAAAAACCTGCGAGACACAGGCTTGGAGGGCGGCGTATGCA
GGGCTGGTATCTGGGTATGGTTATGGCCTTTTCACACATGGAATGACTTC
AAGGGAGTACTCTGAAATATCGAATTATCTCGAACGCTGCAAAGGGGTGG
AGGATGTGTTCAGTGGTCTATATGCAGAACATACAATGTGGAATTTGGGA
GATCGATACAATGGATATAACGGAACAGCGTATCTCGTTCGTTTGGGTGA
AAGGGAAGACTTGTGTGAGCCGCTGGAGGGTCTTATCGTATCGCAACAAT
ACATTCTTTGTCGAATACTTGAGCAGGGAATTGTGGGGTTGGGGTATCCG
GAGGAGGTGGAGTTCGAGAAGGCAGGCGATCTGAAGATTGTCATCACGGT
TGGATGTAGGTTTAAAATCTTTATTGGGAAGCTATGTGGAATGGAGGATT
ACATTCGAGTGGTGGATGGTGAAATGAAGAGTTTGGAGATTGAAGATACT
CGTAGCTTTATCCATAGGAAGCGGCATGGCTGGCCTCTTCGTGGAAGGTG
TGCATGTGAGAGCGGATGGGGGAGAAGCGTGAGGATGTCCGTCGAAGACA
AGAAGACCGGATCGTACGTTGTGTATACATTGCTCCCGACATCGAGTGGT
GGATTCTATTGTGAAGTTGTTGAAGAAGTCGGTGTGTATGTTACAGTGAC
TGAAAAGATTGTCACTGGATTCAGTGGGGGCACCAACTCGACCGGGAGAT
ACTATGAGTACGTTGCGCCGGCCAATCCCTTCGATAGAAACGAGTCCATC
ACGTATTGGATGAGTATCGGAAGCTCACTGGTGGTGTCCAGTACATGTGC
CGTACGCTTCAGCGGCCACCCAGCCTACGATGTTCAAGTGTTCGGGTACT
TGTTAAGAGCAAGGTCAGTGAGCGACAAAGAAGTGGAGTTCCTGTGCCGA
CCAAACGTTGGTAGTATGGAAGACTTGATCGAGTTGGGGAAGACAACCAA
TGTTCTTTACGTGCCAGGGAAGAGAGATATGCGTTTCGTGAAGTGGAAAA
GATTCAATGCCCAGAACGACAACGCCAGAGCGGCTATGGTTGGGACAATA
CCGTCCATAATGGAAGTAGAATTGGTGGGCGAGTATCGGAAGCAGCTTGT
GTCTAAGGCGTACAATGGGCTTCAAGCAGGTCAGTCGCTGCAAGATGTGT
ACCGATCAAACCCTGTTTTGAAAATGGTGGGGAGGTCCGGATGTCGCCAC
TACGAAGTTGATGACGAGGAGTTTGAACGACGCATGTGGCTTAGGGGTTt
taggggttatcgcgtctataatattatatgttag

Coding sequence (CDS) from alignment at tig00000208_pilon:138089..139522+

>Ggra1268.t1 ID=Ggra1268.t1|Name=Ggra1268.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000208_pilon:138089..139522+ (Gracilaria gracilis GNS1m male)
ATGGCTCCCAAAGGAGGGGGAATTTATGGTCATCTCCCTGGTGGAAGTGA
GAAGCCGATTCAAGTGCTGGTAGATAAACGCGAAATTGCTTCGAGAAAGG
TTTTGTTGGGAAAAACCTGCGAGACACAGGCTTGGAGGGCGGCGTATGCA
GGGCTGGTATCTGGGTATGGTTATGGCCTTTTCACACATGGAATGACTTC
AAGGGAGTACTCTGAAATATCGAATTATCTCGAACGCTGCAAAGGGGTGG
AGGATGTGTTCAGTGGTCTATATGCAGAACATACAATGTGGAATTTGGGA
GATCGATACAATGGATATAACGGAACAGCGTATCTCGTTCGTTTGGGTGA
AAGGGAAGACTTGTGTGAGCCGCTGGAGGGTCTTATCGTATCGCAACAAT
ACATTCTTTGTCGAATACTTGAGCAGGGAATTGTGGGGTTGGGGTATCCG
GAGGAGGTGGAGTTCGAGAAGGCAGGCGATCTGAAGATTGTCATCACGGT
TGGATGTAGGTTTAAAATCTTTATTGGGAAGCTATGTGGAATGGAGGATT
ACATTCGAGTGGTGGATGGTGAAATGAAGAGTTTGGAGATTGAAGATACT
CGTAGCTTTATCCATAGGAAGCGGCATGGCTGGCCTCTTCGTGGAAGGTG
TGCATGTGAGAGCGGATGGGGGAGAAGCGTGAGGATGTCCGTCGAAGACA
AGAAGACCGGATCGTACGTTGTGTATACATTGCTCCCGACATCGAGTGGT
GGATTCTATTGTGAAGTTGTTGAAGAAGTCGGTGTGTATGTTACAGTGAC
TGAAAAGATTGTCACTGGATTCAGTGGGGGCACCAACTCGACCGGGAGAT
ACTATGAGTACGTTGCGCCGGCCAATCCCTTCGATAGAAACGAGTCCATC
ACGTATTGGATGAGTATCGGAAGCTCACTGGTGGTGTCCAGTACATGTGC
CGTACGCTTCAGCGGCCACCCAGCCTACGATGTTCAAGTGTTCGGGTACT
TGTTAAGAGCAAGGTCAGTGAGCGACAAAGAAGTGGAGTTCCTGTGCCGA
CCAAACGTTGGTAGTATGGAAGACTTGATCGAGTTGGGGAAGACAACCAA
TGTTCTTTACGTGCCAGGGAAGAGAGATATGCGTTTCGTGAAGTGGAAAA
GATTCAATGCCCAGAACGACAACGCCAGAGCGGCTATGGTTGGGACAATA
CCGTCCATAATGGAAGTAGAATTGGTGGGCGAGTATCGGAAGCAGCTTGT
GTCTAAGGCGTACAATGGGCTTCAAGCAGGTCAGTCGCTGCAAGATGTGT
ACCGATCAAACCCTGTTTTGAAAATGGTGGGGAGGTCCGGATGTCGCCAC
TACGAAGTTGATGACGAGGAGTTTGAACGACGCATGTGGCTTAGGGGTTt
taggggttatcgcgtctataatattatatgttag