Ggra1220.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1220.t1
Unique NameGgra1220.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:140387..141781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue7.15e-93
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1220Ggra1220Gracilaria gracilis GNS1m malegenetig00000926_pilon 140387..141781 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1220.t1.stop1Ggra1220.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 140387..140389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1220.t1.CDS1Ggra1220.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 140387..141781 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1220.t1.exon1Ggra1220.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 140387..141781 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1220.t1.start1Ggra1220.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 141779..141781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1220.t1Ggra1220.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 140387..141781 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1220.t1 ID=Ggra1220.t1|Name=Ggra1220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MAGIQLCYAAQINLGTAHLVHLGLQHSHASLAWLAGPLSGLLFQPLIGAL
SDECAHRMGRRRPFLIGGCLCTCVSLLAFANAQRIGAAASGGEHAPLSVA
IGAFFALDFSIQAIQAPLRALVIDVMPPAKLSAANSYIALHCGIGNLVGG
CLVAVPWSRWWPSVSNVQMVFAISALLLLLCTALTVVSTPEQPLVRTRGG
SRWSSVSRSASSSSSSLHLSSRSASVGSRVYSTLSAMPSPFWSVFCVQLC
TWCGFFALFVYVNSWVGHNVFLGDGTKPPSDQLRQRFDAGVRLGGTANAM
TAVVTIVYSWVLPSLLRAYGVTSVYLFSQGVEAATLMGAMCIRANAYPPS
TALKLAAVADVGAFGVVWATTMSVPWTMIVRALDSDAYYAARKGLFTTVF
NASQSLPQLVVALVAPAILRVRDDAAYVMFVGGVVALVGAVLVLWLRIEQ
RLPSNGKGSRVAAV*
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spliced messenger RNA

>Ggra1220.t1 ID=Ggra1220.t1|Name=Ggra1220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000926_pilon:140387..141781- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCATTCAGCTGTGCTACGCGGCGCAGATCAACCTGGGCACCGC
GCACCTGGTGCACCTCGGGCTGCAGCACTCGCACGCGTCGCTGGCGTGGC
TGGCGGGGCCGCTGTCCGGGCTGCTGTTCCAGCCGCTTATCGGCGCGTTA
TCGGACGAGTGTGCGCACCGCATGGGGCGCCGACGACCGTTTCTTATCGG
CGGCTGTTTGTGTACGTGCGTGTCGCTGCTGGCGTTTGCCAATGCGCAGC
GCATTGGCGCCGCGGCGAGCGGCGGCGAGCACGCGCCGTTGAGCGTGGCA
ATTGGCGCCTTCTTCGCGCTCGACTTCTCCATACAGGCCATTCAGGCGCC
GCTGCGCGCGCTGGTGATCGACGTGATGCCGCCGGCAAAGCTGTCCGCCG
CCAATTCGTACATCGCGCTGCACTGCGGCATTGGCAACTTGGTGGGCGGC
TGTCTGGTGGCCGTGCCGTGGTCCAGGTGGTGGCCGTCCGTCTCCAACGT
GCAGATGGTGTTCGCCATCAGCGCGCTGCTGCTGCTGCTCTGCACGGCGC
TCACAGTGGTCAGCACGCCAGAACAGCCGCTGGTGCGAACGCGCGGCGGC
TCCAGATGGTCGTCTGTGTCGCGCTCCGCGTCGTCGTCGTCGTCGTCGCT
TCACCTGTCGTCGCGCTCCGCCAGCGTCGGGTCGCGCGTGTATAGCACGC
TTTCCGCCATGCCCAGCCCGTTTTGGAGCGTGTTCTGCGTGCAGCTGTGC
ACGTGGTGCGGCTTCTTCGCGCTGTTTGTGTACGTCAACAGCTGGGTGGG
GCACAACGTGTTCCTGGGCGACGGCACCAAGCCGCCGTCCGACCAGCTAC
GCCAGCGCTTCGACGCCGGCGTGCGACTGGGAGGCACGGCCAACGCAATG
ACGGCCGTGGTGACGATTGTGTACTCGTGGGTGCTGCCCAGCCTGCTGCG
CGCGTACGGCGTTACCAGCGTGTACCTGTTCTCGCAGGGCGTGGAGGCGG
CGACGTTGATGGGCGCCATGTGCATCCGCGCCAACGCTTACCCGCCGTCG
ACGGCGCTCAAGCTGGCGGCGGTGGCGGACGTGGGCGCGTTCGGCGTGGT
GTGGGCCACCACCATGAGCGTGCCGTGGACGATGATTGTGCGCGCGCTGG
ATTCGGACGCGTATTATGCGGCGAGGAAGGGGCTGTTCACCACGGTGTTC
AACGCGAGCCAGAGCTTGCCGCAGCTGGTGGTGGCGCTGGTGGCGCCGGC
CATCCTGCGCGTGCGCGACGACGCCGCGTACGTGATGTTTGTGGGCGGCG
TGGTGGCGCTGGTGGGCGCCGTTTTGGTGCTGTGGCTGCGCATTGAGCAG
CGACTGCCAAGTAATGGCAAGGGGAGTAGGGTGGCTGCGGTGTAG
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protein sequence of Ggra1220.t1

>Ggra1220.t1 ID=Ggra1220.t1|Name=Ggra1220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MAGIQLCYAAQINLGTAHLVHLGLQHSHASLAWLAGPLSGLLFQPLIGAL
SDECAHRMGRRRPFLIGGCLCTCVSLLAFANAQRIGAAASGGEHAPLSVA
IGAFFALDFSIQAIQAPLRALVIDVMPPAKLSAANSYIALHCGIGNLVGG
CLVAVPWSRWWPSVSNVQMVFAISALLLLLCTALTVVSTPEQPLVRTRGG
SRWSSVSRSASSSSSSLHLSSRSASVGSRVYSTLSAMPSPFWSVFCVQLC
TWCGFFALFVYVNSWVGHNVFLGDGTKPPSDQLRQRFDAGVRLGGTANAM
TAVVTIVYSWVLPSLLRAYGVTSVYLFSQGVEAATLMGAMCIRANAYPPS
TALKLAAVADVGAFGVVWATTMSVPWTMIVRALDSDAYYAARKGLFTTVF
NASQSLPQLVVALVAPAILRVRDDAAYVMFVGGVVALVGAVLVLWLRIEQ
RLPSNGKGSRVAAV*
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mRNA from alignment at tig00000926_pilon:140387..141781-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1220.t1 ID=Ggra1220.t1|Name=Ggra1220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000926_pilon:140387..141781- (Gracilaria gracilis GNS1m male)
ATGGCCGGCATTCAGCTGTGCTACGCGGCGCAGATCAACCTGGGCACCGC
GCACCTGGTGCACCTCGGGCTGCAGCACTCGCACGCGTCGCTGGCGTGGC
TGGCGGGGCCGCTGTCCGGGCTGCTGTTCCAGCCGCTTATCGGCGCGTTA
TCGGACGAGTGTGCGCACCGCATGGGGCGCCGACGACCGTTTCTTATCGG
CGGCTGTTTGTGTACGTGCGTGTCGCTGCTGGCGTTTGCCAATGCGCAGC
GCATTGGCGCCGCGGCGAGCGGCGGCGAGCACGCGCCGTTGAGCGTGGCA
ATTGGCGCCTTCTTCGCGCTCGACTTCTCCATACAGGCCATTCAGGCGCC
GCTGCGCGCGCTGGTGATCGACGTGATGCCGCCGGCAAAGCTGTCCGCCG
CCAATTCGTACATCGCGCTGCACTGCGGCATTGGCAACTTGGTGGGCGGC
TGTCTGGTGGCCGTGCCGTGGTCCAGGTGGTGGCCGTCCGTCTCCAACGT
GCAGATGGTGTTCGCCATCAGCGCGCTGCTGCTGCTGCTCTGCACGGCGC
TCACAGTGGTCAGCACGCCAGAACAGCCGCTGGTGCGAACGCGCGGCGGC
TCCAGATGGTCGTCTGTGTCGCGCTCCGCGTCGTCGTCGTCGTCGTCGCT
TCACCTGTCGTCGCGCTCCGCCAGCGTCGGGTCGCGCGTGTATAGCACGC
TTTCCGCCATGCCCAGCCCGTTTTGGAGCGTGTTCTGCGTGCAGCTGTGC
ACGTGGTGCGGCTTCTTCGCGCTGTTTGTGTACGTCAACAGCTGGGTGGG
GCACAACGTGTTCCTGGGCGACGGCACCAAGCCGCCGTCCGACCAGCTAC
GCCAGCGCTTCGACGCCGGCGTGCGACTGGGAGGCACGGCCAACGCAATG
ACGGCCGTGGTGACGATTGTGTACTCGTGGGTGCTGCCCAGCCTGCTGCG
CGCGTACGGCGTTACCAGCGTGTACCTGTTCTCGCAGGGCGTGGAGGCGG
CGACGTTGATGGGCGCCATGTGCATCCGCGCCAACGCTTACCCGCCGTCG
ACGGCGCTCAAGCTGGCGGCGGTGGCGGACGTGGGCGCGTTCGGCGTGGT
GTGGGCCACCACCATGAGCGTGCCGTGGACGATGATTGTGCGCGCGCTGG
ATTCGGACGCGTATTATGCGGCGAGGAAGGGGCTGTTCACCACGGTGTTC
AACGCGAGCCAGAGCTTGCCGCAGCTGGTGGTGGCGCTGGTGGCGCCGGC
CATCCTGCGCGTGCGCGACGACGCCGCGTACGTGATGTTTGTGGGCGGCG
TGGTGGCGCTGGTGGGCGCCGTTTTGGTGCTGTGGCTGCGCATTGAGCAG
CGACTGCCAAGTAATGGCAAGGGGAGTAGGGTGGCTGCGGTGTAG
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Coding sequence (CDS) from alignment at tig00000926_pilon:140387..141781-

>Ggra1220.t1 ID=Ggra1220.t1|Name=Ggra1220.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000926_pilon:140387..141781- (Gracilaria gracilis GNS1m male)
ATGGCCGGCATTCAGCTGTGCTACGCGGCGCAGATCAACCTGGGCACCGC
GCACCTGGTGCACCTCGGGCTGCAGCACTCGCACGCGTCGCTGGCGTGGC
TGGCGGGGCCGCTGTCCGGGCTGCTGTTCCAGCCGCTTATCGGCGCGTTA
TCGGACGAGTGTGCGCACCGCATGGGGCGCCGACGACCGTTTCTTATCGG
CGGCTGTTTGTGTACGTGCGTGTCGCTGCTGGCGTTTGCCAATGCGCAGC
GCATTGGCGCCGCGGCGAGCGGCGGCGAGCACGCGCCGTTGAGCGTGGCA
ATTGGCGCCTTCTTCGCGCTCGACTTCTCCATACAGGCCATTCAGGCGCC
GCTGCGCGCGCTGGTGATCGACGTGATGCCGCCGGCAAAGCTGTCCGCCG
CCAATTCGTACATCGCGCTGCACTGCGGCATTGGCAACTTGGTGGGCGGC
TGTCTGGTGGCCGTGCCGTGGTCCAGGTGGTGGCCGTCCGTCTCCAACGT
GCAGATGGTGTTCGCCATCAGCGCGCTGCTGCTGCTGCTCTGCACGGCGC
TCACAGTGGTCAGCACGCCAGAACAGCCGCTGGTGCGAACGCGCGGCGGC
TCCAGATGGTCGTCTGTGTCGCGCTCCGCGTCGTCGTCGTCGTCGTCGCT
TCACCTGTCGTCGCGCTCCGCCAGCGTCGGGTCGCGCGTGTATAGCACGC
TTTCCGCCATGCCCAGCCCGTTTTGGAGCGTGTTCTGCGTGCAGCTGTGC
ACGTGGTGCGGCTTCTTCGCGCTGTTTGTGTACGTCAACAGCTGGGTGGG
GCACAACGTGTTCCTGGGCGACGGCACCAAGCCGCCGTCCGACCAGCTAC
GCCAGCGCTTCGACGCCGGCGTGCGACTGGGAGGCACGGCCAACGCAATG
ACGGCCGTGGTGACGATTGTGTACTCGTGGGTGCTGCCCAGCCTGCTGCG
CGCGTACGGCGTTACCAGCGTGTACCTGTTCTCGCAGGGCGTGGAGGCGG
CGACGTTGATGGGCGCCATGTGCATCCGCGCCAACGCTTACCCGCCGTCG
ACGGCGCTCAAGCTGGCGGCGGTGGCGGACGTGGGCGCGTTCGGCGTGGT
GTGGGCCACCACCATGAGCGTGCCGTGGACGATGATTGTGCGCGCGCTGG
ATTCGGACGCGTATTATGCGGCGAGGAAGGGGCTGTTCACCACGGTGTTC
AACGCGAGCCAGAGCTTGCCGCAGCTGGTGGTGGCGCTGGTGGCGCCGGC
CATCCTGCGCGTGCGCGACGACGCCGCGTACGTGATGTTTGTGGGCGGCG
TGGTGGCGCTGGTGGGCGCCGTTTTGGTGCTGTGGCTGCGCATTGAGCAG
CGACTGCCAAGTAATGGCAAGGGGAGTAGGGTGGCTGCGGTGTAG
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