Ggra1190.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1190.t1
Unique NameGgra1190.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:122937..124250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8049.ENSGMOP00000007575
Preferred nameZUFSP
PFAMsPeptidase_C78,zf-C2H2
Max annot lvl33208|Metazoa
Evalue1.06e-31
EggNOG OGsKOG4696@1|root,KOG4696@2759|Eukaryota,39MBX@33154|Opisthokonta,3BFMJ@33208|Metazoa,3CUW8@33213|Bilateria,488T1@7711|Chordata,48V4H@7742|Vertebrata,49YNX@7898|Actinopterygii
DescriptionZinc finger with UFM1-specific peptidase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1190Ggra1190Gracilaria gracilis GNS1m malegenetig00000237_pilon 122937..124250 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1190.t1.start1Ggra1190.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 122937..122939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1190.t1.CDS1Ggra1190.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 122937..124250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1190.t1.exon1Ggra1190.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 122937..124250 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1190.t1.stop1Ggra1190.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 124248..124250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1190.t1Ggra1190.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 122937..124250 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1190.t1 ID=Ggra1190.t1|Name=Ggra1190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MTTPSNLCPICDKSFPGNLPELERHVNQHLDADEHNASAVAAERLALAEK
AAATLSEPNGVLHDDDEIQKGEDPARAILRQVQLTDAALADQIAQRQQLH
HHSHQAHQPEDEVHKGEDPARAILNEVEQSDAQLAKAIAAIDQPQQSAPQ
LHVEDSRFADCIEHCYVNIIRKIMPNIDLFDQSKKTIHLSSRLDFYSSNL
AGFGWDCGFRNIQMIFSSLLYEPASAAILAESDIKEVPSIPEIAAGIENA
WGKGFDPEGAANFEGNLTDKEVWIGATEAFVLFRSLNLNAFVTDFETPTD
SERKIMFQWIFKHFEKCCGSRNCSLHLPRKARVPPKAVVCPIFCQWQGHS
LTIVGAEKTRGGEIFLVVLDPSRAFYRSVTDPRRNDSSMFLRDVKHPQFA
HPRFQFVSILRGRAEEQSSRTGTRKKLLRRLRFGGPS*
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spliced messenger RNA

>Ggra1190.t1 ID=Ggra1190.t1|Name=Ggra1190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000237_pilon:122937..124250+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGCCGTCAAACTTATGCCCTATTTGTGACAAGAGTTTCCCGGG
CAATCTGCCCGAGCTTGAGAGACACGTCAATCAGCATCTCGACGCCGACG
AACACAACGCTTCCGCCGTTGCTGCAGAGCGTCTGGCGTTGGCCGAGAAG
GCTGCCGCAACGCTGTCCGAGCCCAACGGCGTACTTCACGACGACGATGA
AATCCAAAAAGGAGAGGACCCGGCCAGAGCCATCTTGCGTCAGGTGCAGC
TAACCGATGCCGCTCTGGCCGACCAAATCGCCCAGCGTCAACAGCTCCAC
CACCACTCGCACCAAGCCCATCAACCTGAAGACGAGGTTCACAAAGGTGA
AGATCCAGCGCGCGCTATTCTCAATGAGGTTGAGCAAAGCGATGCACAAC
TGGCCAAAGCAATCGCTGCCATTGACCAACCTCAACAATCCGCACCGCAG
CTCCACGTGGAAGACTCCAGATTTGCCGACTGCATCGAGCATTGCTACGT
CAATATAATTCGCAAGATAATGCCCAATATTGATCTCTTTGACCAGTCCA
AGAAAACCATCCACCTTTCTTCGCGCTTGGACTTCTACTCCAGCAATCTC
GCAGGGTTTGGTTGGGACTGCGGCTTTCGAAACATTCAGATGATCTTCAG
CTCATTGCTGTACGAACCGGCATCTGCTGCTATTCTGGCCGAATCCGACA
TTAAAGAAGTGCCAAGTATCCCCGAAATTGCTGCCGGTATTGAAAATGCG
TGGGGCAAGGGATTTGATCCCGAGGGCGCTGCCAACTTTGAAGGAAATCT
CACCGACAAAGAAGTCTGGATAGGAGCAACTGAAGCCTTCGTTCTCTTTC
GGAGTCTAAACCTCAATGCTTTCGTCACCGATTTTGAGACACCCACCGAT
AGCGAAAGGAAGATCATGTTCCAATGGATCTTTAAGCACTTTGAGAAATG
TTGCGGTTCTCGCAATTGCTCTTTGCATCTTCCGAGAAAAGCCCGCGTAC
CTCCAAAAGCTGTTGTTTGTCCCATTTTCTGTCAATGGCAAGGCCATTCG
CTAACCATTGTAGGTGCCGAGAAGACAAGAGGCGGAGAAATATTTCTCGT
GGTCCTTGATCCGTCACGCGCTTTCTATAGGAGCGTAACTGACCCTCGTC
GCAACGACTCGTCAATGTTTCTCCGCGATGTGAAGCACCCCCAGTTCGCC
CATCCTCGTTTTCAGTTTGTATCCATTCTAAGAGGGAGGGCAGAAGAACA
GTCGAGTAGAACTGGAACTCGGAAGAAACTATTGCGAAGACTTCGTTTCG
GCGGGCCATCGTAG
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protein sequence of Ggra1190.t1

>Ggra1190.t1 ID=Ggra1190.t1|Name=Ggra1190.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MTTPSNLCPICDKSFPGNLPELERHVNQHLDADEHNASAVAAERLALAEK
AAATLSEPNGVLHDDDEIQKGEDPARAILRQVQLTDAALADQIAQRQQLH
HHSHQAHQPEDEVHKGEDPARAILNEVEQSDAQLAKAIAAIDQPQQSAPQ
LHVEDSRFADCIEHCYVNIIRKIMPNIDLFDQSKKTIHLSSRLDFYSSNL
AGFGWDCGFRNIQMIFSSLLYEPASAAILAESDIKEVPSIPEIAAGIENA
WGKGFDPEGAANFEGNLTDKEVWIGATEAFVLFRSLNLNAFVTDFETPTD
SERKIMFQWIFKHFEKCCGSRNCSLHLPRKARVPPKAVVCPIFCQWQGHS
LTIVGAEKTRGGEIFLVVLDPSRAFYRSVTDPRRNDSSMFLRDVKHPQFA
HPRFQFVSILRGRAEEQSSRTGTRKKLLRRLRFGGPS*
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mRNA from alignment at tig00000237_pilon:122937..124250+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1190.t1 ID=Ggra1190.t1|Name=Ggra1190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000237_pilon:122937..124250+ (Gracilaria gracilis GNS1m male)
ATGACGACGCCGTCAAACTTATGCCCTATTTGTGACAAGAGTTTCCCGGG
CAATCTGCCCGAGCTTGAGAGACACGTCAATCAGCATCTCGACGCCGACG
AACACAACGCTTCCGCCGTTGCTGCAGAGCGTCTGGCGTTGGCCGAGAAG
GCTGCCGCAACGCTGTCCGAGCCCAACGGCGTACTTCACGACGACGATGA
AATCCAAAAAGGAGAGGACCCGGCCAGAGCCATCTTGCGTCAGGTGCAGC
TAACCGATGCCGCTCTGGCCGACCAAATCGCCCAGCGTCAACAGCTCCAC
CACCACTCGCACCAAGCCCATCAACCTGAAGACGAGGTTCACAAAGGTGA
AGATCCAGCGCGCGCTATTCTCAATGAGGTTGAGCAAAGCGATGCACAAC
TGGCCAAAGCAATCGCTGCCATTGACCAACCTCAACAATCCGCACCGCAG
CTCCACGTGGAAGACTCCAGATTTGCCGACTGCATCGAGCATTGCTACGT
CAATATAATTCGCAAGATAATGCCCAATATTGATCTCTTTGACCAGTCCA
AGAAAACCATCCACCTTTCTTCGCGCTTGGACTTCTACTCCAGCAATCTC
GCAGGGTTTGGTTGGGACTGCGGCTTTCGAAACATTCAGATGATCTTCAG
CTCATTGCTGTACGAACCGGCATCTGCTGCTATTCTGGCCGAATCCGACA
TTAAAGAAGTGCCAAGTATCCCCGAAATTGCTGCCGGTATTGAAAATGCG
TGGGGCAAGGGATTTGATCCCGAGGGCGCTGCCAACTTTGAAGGAAATCT
CACCGACAAAGAAGTCTGGATAGGAGCAACTGAAGCCTTCGTTCTCTTTC
GGAGTCTAAACCTCAATGCTTTCGTCACCGATTTTGAGACACCCACCGAT
AGCGAAAGGAAGATCATGTTCCAATGGATCTTTAAGCACTTTGAGAAATG
TTGCGGTTCTCGCAATTGCTCTTTGCATCTTCCGAGAAAAGCCCGCGTAC
CTCCAAAAGCTGTTGTTTGTCCCATTTTCTGTCAATGGCAAGGCCATTCG
CTAACCATTGTAGGTGCCGAGAAGACAAGAGGCGGAGAAATATTTCTCGT
GGTCCTTGATCCGTCACGCGCTTTCTATAGGAGCGTAACTGACCCTCGTC
GCAACGACTCGTCAATGTTTCTCCGCGATGTGAAGCACCCCCAGTTCGCC
CATCCTCGTTTTCAGTTTGTATCCATTCTAAGAGGGAGGGCAGAAGAACA
GTCGAGTAGAACTGGAACTCGGAAGAAACTATTGCGAAGACTTCGTTTCG
GCGGGCCATCGTAG
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Coding sequence (CDS) from alignment at tig00000237_pilon:122937..124250+

>Ggra1190.t1 ID=Ggra1190.t1|Name=Ggra1190.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000237_pilon:122937..124250+ (Gracilaria gracilis GNS1m male)
ATGACGACGCCGTCAAACTTATGCCCTATTTGTGACAAGAGTTTCCCGGG
CAATCTGCCCGAGCTTGAGAGACACGTCAATCAGCATCTCGACGCCGACG
AACACAACGCTTCCGCCGTTGCTGCAGAGCGTCTGGCGTTGGCCGAGAAG
GCTGCCGCAACGCTGTCCGAGCCCAACGGCGTACTTCACGACGACGATGA
AATCCAAAAAGGAGAGGACCCGGCCAGAGCCATCTTGCGTCAGGTGCAGC
TAACCGATGCCGCTCTGGCCGACCAAATCGCCCAGCGTCAACAGCTCCAC
CACCACTCGCACCAAGCCCATCAACCTGAAGACGAGGTTCACAAAGGTGA
AGATCCAGCGCGCGCTATTCTCAATGAGGTTGAGCAAAGCGATGCACAAC
TGGCCAAAGCAATCGCTGCCATTGACCAACCTCAACAATCCGCACCGCAG
CTCCACGTGGAAGACTCCAGATTTGCCGACTGCATCGAGCATTGCTACGT
CAATATAATTCGCAAGATAATGCCCAATATTGATCTCTTTGACCAGTCCA
AGAAAACCATCCACCTTTCTTCGCGCTTGGACTTCTACTCCAGCAATCTC
GCAGGGTTTGGTTGGGACTGCGGCTTTCGAAACATTCAGATGATCTTCAG
CTCATTGCTGTACGAACCGGCATCTGCTGCTATTCTGGCCGAATCCGACA
TTAAAGAAGTGCCAAGTATCCCCGAAATTGCTGCCGGTATTGAAAATGCG
TGGGGCAAGGGATTTGATCCCGAGGGCGCTGCCAACTTTGAAGGAAATCT
CACCGACAAAGAAGTCTGGATAGGAGCAACTGAAGCCTTCGTTCTCTTTC
GGAGTCTAAACCTCAATGCTTTCGTCACCGATTTTGAGACACCCACCGAT
AGCGAAAGGAAGATCATGTTCCAATGGATCTTTAAGCACTTTGAGAAATG
TTGCGGTTCTCGCAATTGCTCTTTGCATCTTCCGAGAAAAGCCCGCGTAC
CTCCAAAAGCTGTTGTTTGTCCCATTTTCTGTCAATGGCAAGGCCATTCG
CTAACCATTGTAGGTGCCGAGAAGACAAGAGGCGGAGAAATATTTCTCGT
GGTCCTTGATCCGTCACGCGCTTTCTATAGGAGCGTAACTGACCCTCGTC
GCAACGACTCGTCAATGTTTCTCCGCGATGTGAAGCACCCCCAGTTCGCC
CATCCTCGTTTTCAGTTTGTATCCATTCTAAGAGGGAGGGCAGAAGAACA
GTCGAGTAGAACTGGAACTCGGAAGAAACTATTGCGAAGACTTCGTTTCG
GCGGGCCATCGTAG
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