Ggra1180.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1180.t1
Unique NameGgra1180.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:95271..96389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703345.1
PFAMsRETICULATA-like
Max annot lvl2759|Eukaryota
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009628,GO:0009648,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0099402,GO:1901700
Evalue2.87e-57
EggNOG OGs2CM9Q@1|root,2QPQK@2759|Eukaryota
DescriptionProtein RETICULATA-related
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1180Ggra1180Gracilaria gracilis GNS1m malegenetig00000237_pilon 95271..96389 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1180.t1.start1Ggra1180.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 95271..95273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1180.t1.CDS1Ggra1180.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 95271..96389 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1180.t1.exon1Ggra1180.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 95271..96389 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1180.t1.stop1Ggra1180.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 96387..96389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1180.t1Ggra1180.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 95271..96389 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1180.t1 ID=Ggra1180.t1|Name=Ggra1180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=373bp
MDITAFLLGTPLVPRNVNRRSVCSNRFVISMKLRRKGGYNETFRRDRRTY
DPDPKSVPQFDFPKPHKAAEGTVPDATDQNVLQENNLEESLQAIDAGNGV
PPSGGGDGNEGDGPDWEDESEEPEKEATAGQAVQDTVTDEQVKRMKEVYA
MPFLGALARRWPALRYRLMANARLPLQMGVELSIGFTTKTVAEVQGRKGR
FWKEFDFYLSDIALELFGDAMLVWLLSPVALAGGPVRALPRHAGQLGTFM
LSERIVAFIWKGIQFGMVGFSSSMVGHGLTSWLVKVRNESGRKIGDVTLA
PVIPNSLAWGSFLMVNSNTRYQLVNGIEQRVLDQVFGANAALLGLVTFVL
RATNSYVGSAWWLPWARQWGLQ*
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spliced messenger RNA

>Ggra1180.t1 ID=Ggra1180.t1|Name=Ggra1180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000237_pilon:95271..96389+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTACTGCGTTCCTGCTAGGCACGCCTCTTGTCCCTCGAAATGT
GAATAGGCGTAGTGTGTGTTCGAATCGCTTTGTGATCTCGATGAAGCTCA
GACGCAAAGGGGGGTACAATGAGACTTTTCGCCGCGACAGAAGGACGTAT
GACCCCGATCCTAAAAGCGTGCCACAGTTCGATTTTCCCAAACCTCACAA
AGCTGCAGAAGGCACCGTGCCTGACGCTACTGATCAAAACGTGTTGCAAG
AGAACAATTTGGAGGAAAGTTTGCAAGCAATTGACGCCGGAAACGGAGTG
CCCCCAAGTGGGGGAGGGGATGGAAATGAGGGAGATGGCCCTGACTGGGA
AGATGAGTCTGAAGAGCCAGAAAAAGAGGCCACCGCTGGTCAAGCAGTTC
AAGACACCGTCACTGACGAGCAAGTTAAACGTATGAAGGAGGTTTACGCG
ATGCCCTTTCTCGGAGCACTCGCACGTCGTTGGCCTGCGCTGCGCTATCG
TTTAATGGCTAATGCACGGTTACCACTCCAGATGGGTGTTGAGCTAAGTA
TTGGATTCACAACGAAGACGGTTGCCGAGGTGCAGGGAAGGAAGGGTCGC
TTTTGGAAGGAGTTTGACTTTTATTTAAGTGATATTGCACTTGAGCTGTT
CGGAGATGCAATGCTTGTGTGGTTGCTTAGTCCCGTAGCTCTCGCCGGGG
GTCCCGTGCGAGCATTGCCTAGACATGCCGGGCAACTAGGAACCTTTATG
CTATCGGAAAGAATAGTAGCGTTTATATGGAAAGGTATACAGTTCGGAAT
GGTTGGATTCTCGTCGTCCATGGTGGGGCACGGGCTTACGAGCTGGTTGG
TAAAGGTGAGGAATGAGAGCGGACGCAAGATTGGAGATGTGACATTGGCT
CCAGTCATACCGAACAGCTTGGCGTGGGGTTCATTCCTAATGGTGAATTC
GAACACCAGATATCAGCTAGTGAACGGCATAGAGCAGCGGGTGTTGGACC
AAGTGTTTGGAGCGAACGCAGCACTTCTTGGACTAGTGACGTTTGTGCTC
CGTGCGACCAACAGCTATGTTGGCAGTGCGTGGTGGCTGCCGTGGGCAAG
ACAGTGGGGCCTTCAGTAG
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protein sequence of Ggra1180.t1

>Ggra1180.t1 ID=Ggra1180.t1|Name=Ggra1180.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=373bp
MDITAFLLGTPLVPRNVNRRSVCSNRFVISMKLRRKGGYNETFRRDRRTY
DPDPKSVPQFDFPKPHKAAEGTVPDATDQNVLQENNLEESLQAIDAGNGV
PPSGGGDGNEGDGPDWEDESEEPEKEATAGQAVQDTVTDEQVKRMKEVYA
MPFLGALARRWPALRYRLMANARLPLQMGVELSIGFTTKTVAEVQGRKGR
FWKEFDFYLSDIALELFGDAMLVWLLSPVALAGGPVRALPRHAGQLGTFM
LSERIVAFIWKGIQFGMVGFSSSMVGHGLTSWLVKVRNESGRKIGDVTLA
PVIPNSLAWGSFLMVNSNTRYQLVNGIEQRVLDQVFGANAALLGLVTFVL
RATNSYVGSAWWLPWARQWGLQ*
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mRNA from alignment at tig00000237_pilon:95271..96389+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1180.t1 ID=Ggra1180.t1|Name=Ggra1180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000237_pilon:95271..96389+ (Gracilaria gracilis GNS1m male)
ATGGACATTACTGCGTTCCTGCTAGGCACGCCTCTTGTCCCTCGAAATGT
GAATAGGCGTAGTGTGTGTTCGAATCGCTTTGTGATCTCGATGAAGCTCA
GACGCAAAGGGGGGTACAATGAGACTTTTCGCCGCGACAGAAGGACGTAT
GACCCCGATCCTAAAAGCGTGCCACAGTTCGATTTTCCCAAACCTCACAA
AGCTGCAGAAGGCACCGTGCCTGACGCTACTGATCAAAACGTGTTGCAAG
AGAACAATTTGGAGGAAAGTTTGCAAGCAATTGACGCCGGAAACGGAGTG
CCCCCAAGTGGGGGAGGGGATGGAAATGAGGGAGATGGCCCTGACTGGGA
AGATGAGTCTGAAGAGCCAGAAAAAGAGGCCACCGCTGGTCAAGCAGTTC
AAGACACCGTCACTGACGAGCAAGTTAAACGTATGAAGGAGGTTTACGCG
ATGCCCTTTCTCGGAGCACTCGCACGTCGTTGGCCTGCGCTGCGCTATCG
TTTAATGGCTAATGCACGGTTACCACTCCAGATGGGTGTTGAGCTAAGTA
TTGGATTCACAACGAAGACGGTTGCCGAGGTGCAGGGAAGGAAGGGTCGC
TTTTGGAAGGAGTTTGACTTTTATTTAAGTGATATTGCACTTGAGCTGTT
CGGAGATGCAATGCTTGTGTGGTTGCTTAGTCCCGTAGCTCTCGCCGGGG
GTCCCGTGCGAGCATTGCCTAGACATGCCGGGCAACTAGGAACCTTTATG
CTATCGGAAAGAATAGTAGCGTTTATATGGAAAGGTATACAGTTCGGAAT
GGTTGGATTCTCGTCGTCCATGGTGGGGCACGGGCTTACGAGCTGGTTGG
TAAAGGTGAGGAATGAGAGCGGACGCAAGATTGGAGATGTGACATTGGCT
CCAGTCATACCGAACAGCTTGGCGTGGGGTTCATTCCTAATGGTGAATTC
GAACACCAGATATCAGCTAGTGAACGGCATAGAGCAGCGGGTGTTGGACC
AAGTGTTTGGAGCGAACGCAGCACTTCTTGGACTAGTGACGTTTGTGCTC
CGTGCGACCAACAGCTATGTTGGCAGTGCGTGGTGGCTGCCGTGGGCAAG
ACAGTGGGGCCTTCAGTAG
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Coding sequence (CDS) from alignment at tig00000237_pilon:95271..96389+

>Ggra1180.t1 ID=Ggra1180.t1|Name=Ggra1180.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000237_pilon:95271..96389+ (Gracilaria gracilis GNS1m male)
ATGGACATTACTGCGTTCCTGCTAGGCACGCCTCTTGTCCCTCGAAATGT
GAATAGGCGTAGTGTGTGTTCGAATCGCTTTGTGATCTCGATGAAGCTCA
GACGCAAAGGGGGGTACAATGAGACTTTTCGCCGCGACAGAAGGACGTAT
GACCCCGATCCTAAAAGCGTGCCACAGTTCGATTTTCCCAAACCTCACAA
AGCTGCAGAAGGCACCGTGCCTGACGCTACTGATCAAAACGTGTTGCAAG
AGAACAATTTGGAGGAAAGTTTGCAAGCAATTGACGCCGGAAACGGAGTG
CCCCCAAGTGGGGGAGGGGATGGAAATGAGGGAGATGGCCCTGACTGGGA
AGATGAGTCTGAAGAGCCAGAAAAAGAGGCCACCGCTGGTCAAGCAGTTC
AAGACACCGTCACTGACGAGCAAGTTAAACGTATGAAGGAGGTTTACGCG
ATGCCCTTTCTCGGAGCACTCGCACGTCGTTGGCCTGCGCTGCGCTATCG
TTTAATGGCTAATGCACGGTTACCACTCCAGATGGGTGTTGAGCTAAGTA
TTGGATTCACAACGAAGACGGTTGCCGAGGTGCAGGGAAGGAAGGGTCGC
TTTTGGAAGGAGTTTGACTTTTATTTAAGTGATATTGCACTTGAGCTGTT
CGGAGATGCAATGCTTGTGTGGTTGCTTAGTCCCGTAGCTCTCGCCGGGG
GTCCCGTGCGAGCATTGCCTAGACATGCCGGGCAACTAGGAACCTTTATG
CTATCGGAAAGAATAGTAGCGTTTATATGGAAAGGTATACAGTTCGGAAT
GGTTGGATTCTCGTCGTCCATGGTGGGGCACGGGCTTACGAGCTGGTTGG
TAAAGGTGAGGAATGAGAGCGGACGCAAGATTGGAGATGTGACATTGGCT
CCAGTCATACCGAACAGCTTGGCGTGGGGTTCATTCCTAATGGTGAATTC
GAACACCAGATATCAGCTAGTGAACGGCATAGAGCAGCGGGTGTTGGACC
AAGTGTTTGGAGCGAACGCAGCACTTCTTGGACTAGTGACGTTTGTGCTC
CGTGCGACCAACAGCTATGTTGGCAGTGCGTGGTGGCTGCCGTGGGCAAG
ACAGTGGGGCCTTCAGTAG
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