Ggra1166.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1166.t1
Unique NameGgra1166.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:32875..33519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004990931.1
Preferred nameLENG9
PFAMsAKAP7_NLS,DUF504,zf-CCCH
Max annot lvl33154|Opisthokonta
Evalue3.91e-11
EggNOG OGs28I8M@1|root,2QQIY@2759|Eukaryota,39UZC@33154|Opisthokonta
Descriptionleukocyte receptor cluster
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1166Ggra1166Gracilaria gracilis GNS1m malegenetig00000237_pilon 32875..33519 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1166.t1.start1Ggra1166.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 32875..32877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1166.t1.CDS1Ggra1166.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 32875..33519 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1166.t1.exon1Ggra1166.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 32875..33519 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1166.t1.stop1Ggra1166.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 33517..33519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1166.t1Ggra1166.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 32875..33519 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1166.t1 ID=Ggra1166.t1|Name=Ggra1166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MDLPPRLARALKLHKKVGPIHSLHVFDFDGTLVRTPGPQEGKRRYILETG
KAWTGGWWGRPGSLLPPVVESPFPASRVVRTVFEQMEEVMTRSETAVGVV
VTGRIQPVREPVLRILDEICIAAKNDTVAPGESFLDHQAVITHPGGRRTT
LQFKEDLFRQLVTEEPLGLCPLKELHIWEDRQAHAEAFATDLNDELMKLK
AIKTTVHLVTPETP*
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spliced messenger RNA

>Ggra1166.t1 ID=Ggra1166.t1|Name=Ggra1166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000237_pilon:32875..33519+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTCCTCCTAGATTGGCAAGGGCACTTAAGCTACACAAAAAAGT
TGGTCCGATACACTCTCTGCATGTATTCGACTTTGACGGGACCCTTGTCC
GTACGCCCGGTCCACAAGAAGGGAAACGGAGGTATATTTTGGAAACAGGA
AAAGCATGGACTGGAGGCTGGTGGGGTCGCCCGGGGAGCCTGTTGCCACC
CGTTGTAGAGTCACCGTTTCCAGCCTCTCGAGTGGTACGCACGGTATTCG
AGCAGATGGAGGAGGTGATGACGCGCTCGGAAACGGCAGTTGGGGTGGTT
GTGACTGGCAGAATACAGCCGGTGAGGGAGCCAGTACTTCGGATCCTGGA
TGAAATCTGCATCGCTGCGAAGAATGACACGGTAGCGCCCGGGGAGTCAT
TTCTCGATCACCAAGCGGTGATCACTCATCCCGGAGGTCGGCGCACTACA
CTACAGTTCAAGGAAGACCTGTTTAGGCAGTTGGTGACAGAAGAGCCGCT
GGGTTTGTGTCCGCTGAAGGAGCTCCATATCTGGGAGGACCGACAGGCAC
ACGCCGAAGCGTTCGCCACTGATCTGAACGACGAGCTGATGAAATTGAAG
GCAATCAAGACCACGGTGCACCTCGTAACACCAGAGACGCCGTAG
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protein sequence of Ggra1166.t1

>Ggra1166.t1 ID=Ggra1166.t1|Name=Ggra1166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MDLPPRLARALKLHKKVGPIHSLHVFDFDGTLVRTPGPQEGKRRYILETG
KAWTGGWWGRPGSLLPPVVESPFPASRVVRTVFEQMEEVMTRSETAVGVV
VTGRIQPVREPVLRILDEICIAAKNDTVAPGESFLDHQAVITHPGGRRTT
LQFKEDLFRQLVTEEPLGLCPLKELHIWEDRQAHAEAFATDLNDELMKLK
AIKTTVHLVTPETP*
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mRNA from alignment at tig00000237_pilon:32875..33519+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1166.t1 ID=Ggra1166.t1|Name=Ggra1166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000237_pilon:32875..33519+ (Gracilaria gracilis GNS1m male)
ATGGACCTTCCTCCTAGATTGGCAAGGGCACTTAAGCTACACAAAAAAGT
TGGTCCGATACACTCTCTGCATGTATTCGACTTTGACGGGACCCTTGTCC
GTACGCCCGGTCCACAAGAAGGGAAACGGAGGTATATTTTGGAAACAGGA
AAAGCATGGACTGGAGGCTGGTGGGGTCGCCCGGGGAGCCTGTTGCCACC
CGTTGTAGAGTCACCGTTTCCAGCCTCTCGAGTGGTACGCACGGTATTCG
AGCAGATGGAGGAGGTGATGACGCGCTCGGAAACGGCAGTTGGGGTGGTT
GTGACTGGCAGAATACAGCCGGTGAGGGAGCCAGTACTTCGGATCCTGGA
TGAAATCTGCATCGCTGCGAAGAATGACACGGTAGCGCCCGGGGAGTCAT
TTCTCGATCACCAAGCGGTGATCACTCATCCCGGAGGTCGGCGCACTACA
CTACAGTTCAAGGAAGACCTGTTTAGGCAGTTGGTGACAGAAGAGCCGCT
GGGTTTGTGTCCGCTGAAGGAGCTCCATATCTGGGAGGACCGACAGGCAC
ACGCCGAAGCGTTCGCCACTGATCTGAACGACGAGCTGATGAAATTGAAG
GCAATCAAGACCACGGTGCACCTCGTAACACCAGAGACGCCGTAG
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Coding sequence (CDS) from alignment at tig00000237_pilon:32875..33519+

>Ggra1166.t1 ID=Ggra1166.t1|Name=Ggra1166.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000237_pilon:32875..33519+ (Gracilaria gracilis GNS1m male)
ATGGACCTTCCTCCTAGATTGGCAAGGGCACTTAAGCTACACAAAAAAGT
TGGTCCGATACACTCTCTGCATGTATTCGACTTTGACGGGACCCTTGTCC
GTACGCCCGGTCCACAAGAAGGGAAACGGAGGTATATTTTGGAAACAGGA
AAAGCATGGACTGGAGGCTGGTGGGGTCGCCCGGGGAGCCTGTTGCCACC
CGTTGTAGAGTCACCGTTTCCAGCCTCTCGAGTGGTACGCACGGTATTCG
AGCAGATGGAGGAGGTGATGACGCGCTCGGAAACGGCAGTTGGGGTGGTT
GTGACTGGCAGAATACAGCCGGTGAGGGAGCCAGTACTTCGGATCCTGGA
TGAAATCTGCATCGCTGCGAAGAATGACACGGTAGCGCCCGGGGAGTCAT
TTCTCGATCACCAAGCGGTGATCACTCATCCCGGAGGTCGGCGCACTACA
CTACAGTTCAAGGAAGACCTGTTTAGGCAGTTGGTGACAGAAGAGCCGCT
GGGTTTGTGTCCGCTGAAGGAGCTCCATATCTGGGAGGACCGACAGGCAC
ACGCCGAAGCGTTCGCCACTGATCTGAACGACGAGCTGATGAAATTGAAG
GCAATCAAGACCACGGTGCACCTCGTAACACCAGAGACGCCGTAG
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