Ggra116.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra116.t1
Unique NameGgra116.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000221_piloncontigtig00000221_pilon:52389..52637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra116Ggra116Gracilaria gracilis GNS1m malegenetig00000221_pilon 52389..52637 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra116.t1.start1Ggra116.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000221_pilon 52389..52391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra116.t1.CDS1Ggra116.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000221_pilon 52389..52637 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra116.t1.exon1Ggra116.t1.exon1Gracilaria gracilis GNS1m maleexontig00000221_pilon 52389..52637 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra116.t1.stop1Ggra116.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000221_pilon 52635..52637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra116.t1Ggra116.t1Gracilaria gracilis GNS1m malepolypeptidetig00000221_pilon 52389..52637 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra116.t1 ID=Ggra116.t1|Name=Ggra116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MSTSAGARHISSIVQDTARMIGALAGVKGRKMQGTKSPGTGHESTEPGKF
REKDCATSAGQSAAKPHADSAKNGSSAGSKNA*
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spliced messenger RNA

>Ggra116.t1 ID=Ggra116.t1|Name=Ggra116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000221_pilon:52389..52637+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACAAGTGCCGGTGCGAGGCATATATCTTCTATTGTGCAGGACAC
GGCAAGGATGATCGGTGCTTTGGCGGGTGTGAAAGGCAGGAAAATGCAGG
GCACGAAGAGCCCCGGCACAGGACATGAGTCAACCGAACCGGGAAAGTTT
CGTGAGAAGGACTGCGCAACGTCTGCCGGCCAGTCTGCTGCTAAGCCTCA
TGCTGATTCTGCAAAGAACGGGTCCTCGGCTGGTTCAAAGAATGCATAA
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protein sequence of Ggra116.t1

>Ggra116.t1 ID=Ggra116.t1|Name=Ggra116.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MSTSAGARHISSIVQDTARMIGALAGVKGRKMQGTKSPGTGHESTEPGKF
REKDCATSAGQSAAKPHADSAKNGSSAGSKNA*
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mRNA from alignment at tig00000221_pilon:52389..52637+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra116.t1 ID=Ggra116.t1|Name=Ggra116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000221_pilon:52389..52637+ (Gracilaria gracilis GNS1m male)
ATGTCCACAAGTGCCGGTGCGAGGCATATATCTTCTATTGTGCAGGACAC
GGCAAGGATGATCGGTGCTTTGGCGGGTGTGAAAGGCAGGAAAATGCAGG
GCACGAAGAGCCCCGGCACAGGACATGAGTCAACCGAACCGGGAAAGTTT
CGTGAGAAGGACTGCGCAACGTCTGCCGGCCAGTCTGCTGCTAAGCCTCA
TGCTGATTCTGCAAAGAACGGGTCCTCGGCTGGTTCAAAGAATGCATAA
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Coding sequence (CDS) from alignment at tig00000221_pilon:52389..52637+

>Ggra116.t1 ID=Ggra116.t1|Name=Ggra116.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000221_pilon:52389..52637+ (Gracilaria gracilis GNS1m male)
ATGTCCACAAGTGCCGGTGCGAGGCATATATCTTCTATTGTGCAGGACAC
GGCAAGGATGATCGGTGCTTTGGCGGGTGTGAAAGGCAGGAAAATGCAGG
GCACGAAGAGCCCCGGCACAGGACATGAGTCAACCGAACCGGGAAAGTTT
CGTGAGAAGGACTGCGCAACGTCTGCCGGCCAGTCTGCTGCTAAGCCTCA
TGCTGATTCTGCAAAGAACGGGTCCTCGGCTGGTTCAAAGAATGCATAA
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