Ggra1152.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1152.t1
Unique NameGgra1152.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:162707..163591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1152Ggra1152Gracilaria gracilis GNS1m malegenetig00000140_pilon 162707..163591 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1152.t1.start1Ggra1152.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000140_pilon 162707..162709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1152.t1.CDS1Ggra1152.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000140_pilon 162707..163591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1152.t1.exon1Ggra1152.t1.exon1Gracilaria gracilis GNS1m maleexontig00000140_pilon 162707..163591 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1152.t1.stop1Ggra1152.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000140_pilon 163589..163591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1152.t1Ggra1152.t1Gracilaria gracilis GNS1m malepolypeptidetig00000140_pilon 162707..163591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1152.t1 ID=Ggra1152.t1|Name=Ggra1152.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MAAGVAVAFAASPAAVNMGCSTELRAAAKCGDLQRVTKHLAHGACVKRTD
DCGRTALHLASRNGCLAVVRVLLAHGADVNDFDDRGRSALHFASHKGRLA
VVKELLEYNADVDDSGGCGYTALHFASLAGRLTVVQALLAHGAEVNKSAH
HARTALHFASQEGHLAVVQALLAHGADVHCADCQGQTPLHYAAHHNEQSA
ALALWRAGADPHRRNDDGLTPLSLLREDSDAAKQMRTSLHLVIDPRLLFP
PPLMPTALRPQRAPSPLHALTELQVNTVLSVCHTIQVEFNERQE*
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spliced messenger RNA

>Ggra1152.t1 ID=Ggra1152.t1|Name=Ggra1152.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000140_pilon:162707..163591+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGGGGGTGGCGGTGGCGTTTGCTGCGTCGCCCGCCGCCGTAAA
CATGGGCTGCAGCACCGAGCTGCGTGCAGCTGCAAAGTGCGGCGATTTGC
AGCGCGTGACGAAACACCTCGCGCACGGTGCCTGTGTCAAACGCACAGAC
GATTGTGGCAGAACTGCGTTGCACCTTGCCTCTCGCAACGGGTGCTTGGC
TGTGGTGCGAGTGCTGCTCGCGCACGGTGCCGACGTGAACGACTTCGACG
ATCGTGGCAGAAGTGCGTTGCACTTTGCGTCGCATAAAGGGCGCTTGGCT
GTGGTGAAAGAGCTGCTGGAGTACAACGCCGACGTGGACGACTCCGGCGG
TTGTGGCTATACTGCGTTGCACTTTGCCTCTTTGGCAGGACGGTTGACGG
TGGTGCAAGCGCTGCTGGCGCACGGCGCCGAAGTGAACAAATCCGCCCAT
CATGCTCGCACTGCGTTGCACTTTGCCTCTCAGGAAGGACACTTGGCTGT
GGTGCAAGCGCTGCTGGCGCACGGCGCCGACGTTCACTGCGCCGACTGTC
AGGGACAGACTCCGCTTCACTACGCTGCCCATCACAACGAACAGTCTgcg
gcgctcgcgctgtggcgcgccggcgccgacccgcaccgAAGGAACGACGA
CGGCCTGACGCCGTTGTCTCTTCTGCGGGAAGACAGCGATGCCGCCAAAC
AGATGCGCACCTCCCTACATCTCGTTATCGATCCTCGGTTGCTGTTCCCT
CCTCCGTTGATGCCCACCGCCTTGCGCCCGCAGCGTGCCCCGTCCCCCTT
ACATGCGCTCACCGAGCTACAGGTAAACACTGTACTTAGTGTGTGCCACA
CTATTCAAGTGGAGTTCAATGAGCGGCAAGAATGA
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protein sequence of Ggra1152.t1

>Ggra1152.t1 ID=Ggra1152.t1|Name=Ggra1152.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MAAGVAVAFAASPAAVNMGCSTELRAAAKCGDLQRVTKHLAHGACVKRTD
DCGRTALHLASRNGCLAVVRVLLAHGADVNDFDDRGRSALHFASHKGRLA
VVKELLEYNADVDDSGGCGYTALHFASLAGRLTVVQALLAHGAEVNKSAH
HARTALHFASQEGHLAVVQALLAHGADVHCADCQGQTPLHYAAHHNEQSA
ALALWRAGADPHRRNDDGLTPLSLLREDSDAAKQMRTSLHLVIDPRLLFP
PPLMPTALRPQRAPSPLHALTELQVNTVLSVCHTIQVEFNERQE*
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mRNA from alignment at tig00000140_pilon:162707..163591+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1152.t1 ID=Ggra1152.t1|Name=Ggra1152.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000140_pilon:162707..163591+ (Gracilaria gracilis GNS1m male)
ATGGCGGCGGGGGTGGCGGTGGCGTTTGCTGCGTCGCCCGCCGCCGTAAA
CATGGGCTGCAGCACCGAGCTGCGTGCAGCTGCAAAGTGCGGCGATTTGC
AGCGCGTGACGAAACACCTCGCGCACGGTGCCTGTGTCAAACGCACAGAC
GATTGTGGCAGAACTGCGTTGCACCTTGCCTCTCGCAACGGGTGCTTGGC
TGTGGTGCGAGTGCTGCTCGCGCACGGTGCCGACGTGAACGACTTCGACG
ATCGTGGCAGAAGTGCGTTGCACTTTGCGTCGCATAAAGGGCGCTTGGCT
GTGGTGAAAGAGCTGCTGGAGTACAACGCCGACGTGGACGACTCCGGCGG
TTGTGGCTATACTGCGTTGCACTTTGCCTCTTTGGCAGGACGGTTGACGG
TGGTGCAAGCGCTGCTGGCGCACGGCGCCGAAGTGAACAAATCCGCCCAT
CATGCTCGCACTGCGTTGCACTTTGCCTCTCAGGAAGGACACTTGGCTGT
GGTGCAAGCGCTGCTGGCGCACGGCGCCGACGTTCACTGCGCCGACTGTC
AGGGACAGACTCCGCTTCACTACGCTGCCCATCACAACGAACAGTCTgcg
gcgctcgcgctgtggcgcgccggcgccgacccgcaccgAAGGAACGACGA
CGGCCTGACGCCGTTGTCTCTTCTGCGGGAAGACAGCGATGCCGCCAAAC
AGATGCGCACCTCCCTACATCTCGTTATCGATCCTCGGTTGCTGTTCCCT
CCTCCGTTGATGCCCACCGCCTTGCGCCCGCAGCGTGCCCCGTCCCCCTT
ACATGCGCTCACCGAGCTACAGGTAAACACTGTACTTAGTGTGTGCCACA
CTATTCAAGTGGAGTTCAATGAGCGGCAAGAATGA
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Coding sequence (CDS) from alignment at tig00000140_pilon:162707..163591+

>Ggra1152.t1 ID=Ggra1152.t1|Name=Ggra1152.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000140_pilon:162707..163591+ (Gracilaria gracilis GNS1m male)
ATGGCGGCGGGGGTGGCGGTGGCGTTTGCTGCGTCGCCCGCCGCCGTAAA
CATGGGCTGCAGCACCGAGCTGCGTGCAGCTGCAAAGTGCGGCGATTTGC
AGCGCGTGACGAAACACCTCGCGCACGGTGCCTGTGTCAAACGCACAGAC
GATTGTGGCAGAACTGCGTTGCACCTTGCCTCTCGCAACGGGTGCTTGGC
TGTGGTGCGAGTGCTGCTCGCGCACGGTGCCGACGTGAACGACTTCGACG
ATCGTGGCAGAAGTGCGTTGCACTTTGCGTCGCATAAAGGGCGCTTGGCT
GTGGTGAAAGAGCTGCTGGAGTACAACGCCGACGTGGACGACTCCGGCGG
TTGTGGCTATACTGCGTTGCACTTTGCCTCTTTGGCAGGACGGTTGACGG
TGGTGCAAGCGCTGCTGGCGCACGGCGCCGAAGTGAACAAATCCGCCCAT
CATGCTCGCACTGCGTTGCACTTTGCCTCTCAGGAAGGACACTTGGCTGT
GGTGCAAGCGCTGCTGGCGCACGGCGCCGACGTTCACTGCGCCGACTGTC
AGGGACAGACTCCGCTTCACTACGCTGCCCATCACAACGAACAGTCTgcg
gcgctcgcgctgtggcgcgccggcgccgacccgcaccgAAGGAACGACGA
CGGCCTGACGCCGTTGTCTCTTCTGCGGGAAGACAGCGATGCCGCCAAAC
AGATGCGCACCTCCCTACATCTCGTTATCGATCCTCGGTTGCTGTTCCCT
CCTCCGTTGATGCCCACCGCCTTGCGCCCGCAGCGTGCCCCGTCCCCCTT
ACATGCGCTCACCGAGCTACAGGTAAACACTGTACTTAGTGTGTGCCACA
CTATTCAAGTGGAGTTCAATGAGCGGCAAGAATGA
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