Ggra115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra115.t1
Unique NameGgra115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000221_piloncontigtig00000221_pilon:26013..26579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra115Ggra115Gracilaria gracilis GNS1m malegenetig00000221_pilon 26013..26579 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra115.t1.start1Ggra115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000221_pilon 26013..26015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra115.t1.CDS1Ggra115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000221_pilon 26013..26579 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra115.t1.exon1Ggra115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000221_pilon 26013..26579 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra115.t1.stop1Ggra115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000221_pilon 26577..26579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra115.t1Ggra115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000221_pilon 26013..26579 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra115.t1 ID=Ggra115.t1|Name=Ggra115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MPLLQAGLNALQVRVQIKSKEFSMHGLEQLVRKAADTIQGLKDRRKEREP
KPDYRTNEERIGSPNTAMRHFERPSTNGDVARVTAILREAYKGRGGTLTV
VQMVCEWGLSSMVADRAEAICVATAVLKELGSGLANASSTSRTTKDGTTP
KCYKKGSHQARNEASTSTLNTLTGNTDPDLYNAMYATS*
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spliced messenger RNA

>Ggra115.t1 ID=Ggra115.t1|Name=Ggra115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000221_pilon:26013..26579+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGTTGCAAGCCGGCTTGAACGCATTGCAAGTACGCGTCCAAAT
CAAGAGCAAGGAGTTCAGCATGCACGGCCTCGAACAACTAGTGCGCAAGG
CCGCTGATACCATTCAAGGTTTGAAGGATAGAAGGAAAGAAAGAGAGCCC
AAACCTGACTATCGTACTAATGAGGAAAGAATTGGTTCTCCGAATACAGC
CATGCGTCATTTTGAACGACCTTCTACTAATGGAGATGTCGCACGCGTCA
CTGCGATTTTGCGAGAAGCTTATAAAGGGCGTGGTGGTACATTAACGGTT
GTGCAGATGGTATGTGAGTGGGGTCTATCATCTATGGTTGCGGACCGTGC
GGAAGCCATCTGTGTGGCAACAGCCGTCTTAAAAGAACTTGGTTCGGGAC
TAGCGAACGCTAGTTCAACTTCAAGAACAACCAAGGACGGCACAACTCCG
AAATGCTACAAGAAGGGAAGCCACCAAGCGCGGAACGAGGCCTCCACATC
AACGTTGAACACCCTGACCGGTAATACAGACCCTGACCTTTACAACGCGA
TGTATGCCACTTCATGA
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protein sequence of Ggra115.t1

>Ggra115.t1 ID=Ggra115.t1|Name=Ggra115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPLLQAGLNALQVRVQIKSKEFSMHGLEQLVRKAADTIQGLKDRRKEREP
KPDYRTNEERIGSPNTAMRHFERPSTNGDVARVTAILREAYKGRGGTLTV
VQMVCEWGLSSMVADRAEAICVATAVLKELGSGLANASSTSRTTKDGTTP
KCYKKGSHQARNEASTSTLNTLTGNTDPDLYNAMYATS*
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mRNA from alignment at tig00000221_pilon:26013..26579+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra115.t1 ID=Ggra115.t1|Name=Ggra115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000221_pilon:26013..26579+ (Gracilaria gracilis GNS1m male)
ATGCCTCTGTTGCAAGCCGGCTTGAACGCATTGCAAGTACGCGTCCAAAT
CAAGAGCAAGGAGTTCAGCATGCACGGCCTCGAACAACTAGTGCGCAAGG
CCGCTGATACCATTCAAGGTTTGAAGGATAGAAGGAAAGAAAGAGAGCCC
AAACCTGACTATCGTACTAATGAGGAAAGAATTGGTTCTCCGAATACAGC
CATGCGTCATTTTGAACGACCTTCTACTAATGGAGATGTCGCACGCGTCA
CTGCGATTTTGCGAGAAGCTTATAAAGGGCGTGGTGGTACATTAACGGTT
GTGCAGATGGTATGTGAGTGGGGTCTATCATCTATGGTTGCGGACCGTGC
GGAAGCCATCTGTGTGGCAACAGCCGTCTTAAAAGAACTTGGTTCGGGAC
TAGCGAACGCTAGTTCAACTTCAAGAACAACCAAGGACGGCACAACTCCG
AAATGCTACAAGAAGGGAAGCCACCAAGCGCGGAACGAGGCCTCCACATC
AACGTTGAACACCCTGACCGGTAATACAGACCCTGACCTTTACAACGCGA
TGTATGCCACTTCATGA
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Coding sequence (CDS) from alignment at tig00000221_pilon:26013..26579+

>Ggra115.t1 ID=Ggra115.t1|Name=Ggra115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000221_pilon:26013..26579+ (Gracilaria gracilis GNS1m male)
ATGCCTCTGTTGCAAGCCGGCTTGAACGCATTGCAAGTACGCGTCCAAAT
CAAGAGCAAGGAGTTCAGCATGCACGGCCTCGAACAACTAGTGCGCAAGG
CCGCTGATACCATTCAAGGTTTGAAGGATAGAAGGAAAGAAAGAGAGCCC
AAACCTGACTATCGTACTAATGAGGAAAGAATTGGTTCTCCGAATACAGC
CATGCGTCATTTTGAACGACCTTCTACTAATGGAGATGTCGCACGCGTCA
CTGCGATTTTGCGAGAAGCTTATAAAGGGCGTGGTGGTACATTAACGGTT
GTGCAGATGGTATGTGAGTGGGGTCTATCATCTATGGTTGCGGACCGTGC
GGAAGCCATCTGTGTGGCAACAGCCGTCTTAAAAGAACTTGGTTCGGGAC
TAGCGAACGCTAGTTCAACTTCAAGAACAACCAAGGACGGCACAACTCCG
AAATGCTACAAGAAGGGAAGCCACCAAGCGCGGAACGAGGCCTCCACATC
AACGTTGAACACCCTGACCGGTAATACAGACCCTGACCTTTACAACGCGA
TGTATGCCACTTCATGA
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