Ggra11144.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11144.t1
Unique Name	Ggra11144.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000180_pilon	contig	tig00000180_pilon:188457..189983 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11144	Ggra11144	Gracilaria gracilis GNS1m male	gene	tig00000180_pilon 188457..189983 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11144.t1.stop1	Ggra11144.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000180_pilon 188457..188459 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11144.t1.CDS1	Ggra11144.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000180_pilon 188457..189983 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11144.t1.exon1	Ggra11144.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000180_pilon 188457..189983 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11144.t1.start1	Ggra11144.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000180_pilon 189981..189983 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11144.t1	Ggra11144.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000180_pilon 188457..189983 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000180_pilon:188457..189983-
coding sequence from alignment at tig00000180_pilon:188457..189983-

mRNA sequence

>Ggra11144.t1 ID=Ggra11144.t1|Name=Ggra11144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp
MNSYIFSSDGEEFAASGSRVSATELSSEDAVMSANQKKSRISPITKCPLS
LWPDNDAFLNDDEDVVDLFSSTDEEKSRGVQKKKLAKVNKAHKRDIIEHI
TRQKSRGSNGILKPSKSVVKAKGRTGNNWTRSLNGKHIVVSQKTTGRTMS
KDIDLDRKSTLSEASVFGEHEYDDDLISPTFTEEGEQKKKRRLVFEDESF
IEECTPTKSKANTSYPVMSSKMRGKSRRKDRGIRSWLSLRREDGIFNDNT
DVIDLISPKDIGEGKTKKKRRFSLAADEGGAYESGELSLENASKSFRPTT
SEKVNRKEASSDSSEAARTAWKLWVTHLEKVRPDVFTGPEARLEIRSRVR
QGKSAYHGIGITEANCLGLRKVLKEFSKQKMTIAKPLKTKKELITTVAQF
LRWCVVSSVCKKLDVWKEKALFAGLSHIHLVAKFVSYFQERCERRTVRSK
AAHLILVCDAAPSECAKDQENGIVTVSLLLQAISGKQTRPTACRIQRRHL
QLSDSDEE*

spliced messenger RNA

>Ggra11144.t1 ID=Ggra11144.t1|Name=Ggra11144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000180_pilon:188457..189983- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCTTATATATTCTCATCAGACGGTGAAGAATTTGCGGCAAGCGG
CAGCCGTGTGTCCGCCACTGAGCTCTCATCCGAAGATGCGGTCATGTCGG
CCAACCAGAAGAAGTCGAGAATTAGTCCGATCACGAAGTGTCCTCTGTCG
CTGTGGCCTGATAATGACGCCTTTCTTAACGATGATGAGGATGTGGTTGA
TCTATTTTCTTCGACGGACGAAGAAAAGAGCCGAGGAGTGCAGAAGAAGA
AGCTTGCTAAGGTGAACAAGGCTCACAAGAGGGATATCATTGAACACATT
ACGCGCCAGAAATCAAGGGGAAGCAACGGCATACTCAAGCCTTCAAAAAG
TGTAGTGAAGGCGAAGGGCAGAACTGGGAACAATTGGACACGGTCATTGA
ACGGGAAGCACATCGTAGTGTCTCAGAAGACCACCGGGAGGACAATGAGT
AAAGATATAGATCTGGATAGAAAGTCTACTTTGAGTGAGGCCTCCGTTTT
TGGTGAGCACGAGTACGACGATGATCTAATCTCGCCAACCTTCACAGAGG
AGGGCGAACAAAAGAAGAAAAGGAGGCTTGTTTTTGAAGACGAGAGCTTT
ATTGAGGAATGTACGCCTACGAAGTCGAAGGCTAATACTAGCTATCCAGT
CATGTCGTCTAAGATGAGAGGAAAGTCGAGGCGCAAGGATCGCGGTATAA
GATCATGGTTATCTCTCCGGCGTGAAGACGGCATATTCAATGATAACACA
GATGTCATTGATCTCATTTCGCCGAAGGACATTGGGGAGGGTAAAACTAA
GAAGAAGAGGAGGTTTTCCTTGGCTGCAGACGAAGGCGGAGCCTATGAAA
GTGGCGAATTATCGCTTGAAAATGCATCGAAGAGCTTCAGGCCTACTACT
TCAGAGAAAGTCAACCGGAAAGAAGCGAGCTCCGATTCATCTGAAGCTGC
CAGAACGGCTTGGAAACTGTGGGTAACTCATCTAGAGAAGGTGAGGCCTG
ATGTCTTCACTGGACCGGAAGCCAGACTTGAAATTCGTTCAAGAGTTCGG
CAAGGGAAGTCTGCTTATCATGGAATTGGGATTACAGAAGCGAACTGCCT
CGGTTTGCGCAAGGTCCTGAAAGAATTTTCGAAGCAAAAGATGACAATTG
CAAAGCCTTTGAAGACAAAGAAGGAACTAATTACTACAGTTGCACAGTTT
CTGAGGTGGTGCGTCGTCAGCTCTGTTTGCAAGAAATTGGACGTATGGAA
AGAAAAAGCACTCTTTGCCGGTCTTTCTCACATTCATCTGGTTGCAAAGT
TTGTTTCTTACTTCCAAGAGCGTTGTGAACGTCGCACAGTGAGGAGCAAG
GCAGCGCATCTTATTCTGGTGTGCGATGCGGCTCCTTCAGAATGCGCTAA
GGACCAAGAGAATGGAATTGTTACCGTATCTCTGCTGCTCCAGGCTATAA
GTGGCAAGCAAACCAGACCGACTGCGTGCAGGATTCAGCGCCGCCATCTG
CAACTGTCGGACAGTGATGAAGAATAA

protein sequence of Ggra11144.t1

>Ggra11144.t1 ID=Ggra11144.t1|Name=Ggra11144.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MNSYIFSSDGEEFAASGSRVSATELSSEDAVMSANQKKSRISPITKCPLS
LWPDNDAFLNDDEDVVDLFSSTDEEKSRGVQKKKLAKVNKAHKRDIIEHI
TRQKSRGSNGILKPSKSVVKAKGRTGNNWTRSLNGKHIVVSQKTTGRTMS
KDIDLDRKSTLSEASVFGEHEYDDDLISPTFTEEGEQKKKRRLVFEDESF
IEECTPTKSKANTSYPVMSSKMRGKSRRKDRGIRSWLSLRREDGIFNDNT
DVIDLISPKDIGEGKTKKKRRFSLAADEGGAYESGELSLENASKSFRPTT
SEKVNRKEASSDSSEAARTAWKLWVTHLEKVRPDVFTGPEARLEIRSRVR
QGKSAYHGIGITEANCLGLRKVLKEFSKQKMTIAKPLKTKKELITTVAQF
LRWCVVSSVCKKLDVWKEKALFAGLSHIHLVAKFVSYFQERCERRTVRSK
AAHLILVCDAAPSECAKDQENGIVTVSLLLQAISGKQTRPTACRIQRRHL
QLSDSDEE*

mRNA from alignment at tig00000180_pilon:188457..189983-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11144.t1 ID=Ggra11144.t1|Name=Ggra11144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000180_pilon:188457..189983- (Gracilaria gracilis GNS1m male)
ATGAACTCTTATATATTCTCATCAGACGGTGAAGAATTTGCGGCAAGCGG
CAGCCGTGTGTCCGCCACTGAGCTCTCATCCGAAGATGCGGTCATGTCGG
CCAACCAGAAGAAGTCGAGAATTAGTCCGATCACGAAGTGTCCTCTGTCG
CTGTGGCCTGATAATGACGCCTTTCTTAACGATGATGAGGATGTGGTTGA
TCTATTTTCTTCGACGGACGAAGAAAAGAGCCGAGGAGTGCAGAAGAAGA
AGCTTGCTAAGGTGAACAAGGCTCACAAGAGGGATATCATTGAACACATT
ACGCGCCAGAAATCAAGGGGAAGCAACGGCATACTCAAGCCTTCAAAAAG
TGTAGTGAAGGCGAAGGGCAGAACTGGGAACAATTGGACACGGTCATTGA
ACGGGAAGCACATCGTAGTGTCTCAGAAGACCACCGGGAGGACAATGAGT
AAAGATATAGATCTGGATAGAAAGTCTACTTTGAGTGAGGCCTCCGTTTT
TGGTGAGCACGAGTACGACGATGATCTAATCTCGCCAACCTTCACAGAGG
AGGGCGAACAAAAGAAGAAAAGGAGGCTTGTTTTTGAAGACGAGAGCTTT
ATTGAGGAATGTACGCCTACGAAGTCGAAGGCTAATACTAGCTATCCAGT
CATGTCGTCTAAGATGAGAGGAAAGTCGAGGCGCAAGGATCGCGGTATAA
GATCATGGTTATCTCTCCGGCGTGAAGACGGCATATTCAATGATAACACA
GATGTCATTGATCTCATTTCGCCGAAGGACATTGGGGAGGGTAAAACTAA
GAAGAAGAGGAGGTTTTCCTTGGCTGCAGACGAAGGCGGAGCCTATGAAA
GTGGCGAATTATCGCTTGAAAATGCATCGAAGAGCTTCAGGCCTACTACT
TCAGAGAAAGTCAACCGGAAAGAAGCGAGCTCCGATTCATCTGAAGCTGC
CAGAACGGCTTGGAAACTGTGGGTAACTCATCTAGAGAAGGTGAGGCCTG
ATGTCTTCACTGGACCGGAAGCCAGACTTGAAATTCGTTCAAGAGTTCGG
CAAGGGAAGTCTGCTTATCATGGAATTGGGATTACAGAAGCGAACTGCCT
CGGTTTGCGCAAGGTCCTGAAAGAATTTTCGAAGCAAAAGATGACAATTG
CAAAGCCTTTGAAGACAAAGAAGGAACTAATTACTACAGTTGCACAGTTT
CTGAGGTGGTGCGTCGTCAGCTCTGTTTGCAAGAAATTGGACGTATGGAA
AGAAAAAGCACTCTTTGCCGGTCTTTCTCACATTCATCTGGTTGCAAAGT
TTGTTTCTTACTTCCAAGAGCGTTGTGAACGTCGCACAGTGAGGAGCAAG
GCAGCGCATCTTATTCTGGTGTGCGATGCGGCTCCTTCAGAATGCGCTAA
GGACCAAGAGAATGGAATTGTTACCGTATCTCTGCTGCTCCAGGCTATAA
GTGGCAAGCAAACCAGACCGACTGCGTGCAGGATTCAGCGCCGCCATCTG
CAACTGTCGGACAGTGATGAAGAATAA

Coding sequence (CDS) from alignment at tig00000180_pilon:188457..189983-

>Ggra11144.t1 ID=Ggra11144.t1|Name=Ggra11144.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000180_pilon:188457..189983- (Gracilaria gracilis GNS1m male)
ATGAACTCTTATATATTCTCATCAGACGGTGAAGAATTTGCGGCAAGCGG
CAGCCGTGTGTCCGCCACTGAGCTCTCATCCGAAGATGCGGTCATGTCGG
CCAACCAGAAGAAGTCGAGAATTAGTCCGATCACGAAGTGTCCTCTGTCG
CTGTGGCCTGATAATGACGCCTTTCTTAACGATGATGAGGATGTGGTTGA
TCTATTTTCTTCGACGGACGAAGAAAAGAGCCGAGGAGTGCAGAAGAAGA
AGCTTGCTAAGGTGAACAAGGCTCACAAGAGGGATATCATTGAACACATT
ACGCGCCAGAAATCAAGGGGAAGCAACGGCATACTCAAGCCTTCAAAAAG
TGTAGTGAAGGCGAAGGGCAGAACTGGGAACAATTGGACACGGTCATTGA
ACGGGAAGCACATCGTAGTGTCTCAGAAGACCACCGGGAGGACAATGAGT
AAAGATATAGATCTGGATAGAAAGTCTACTTTGAGTGAGGCCTCCGTTTT
TGGTGAGCACGAGTACGACGATGATCTAATCTCGCCAACCTTCACAGAGG
AGGGCGAACAAAAGAAGAAAAGGAGGCTTGTTTTTGAAGACGAGAGCTTT
ATTGAGGAATGTACGCCTACGAAGTCGAAGGCTAATACTAGCTATCCAGT
CATGTCGTCTAAGATGAGAGGAAAGTCGAGGCGCAAGGATCGCGGTATAA
GATCATGGTTATCTCTCCGGCGTGAAGACGGCATATTCAATGATAACACA
GATGTCATTGATCTCATTTCGCCGAAGGACATTGGGGAGGGTAAAACTAA
GAAGAAGAGGAGGTTTTCCTTGGCTGCAGACGAAGGCGGAGCCTATGAAA
GTGGCGAATTATCGCTTGAAAATGCATCGAAGAGCTTCAGGCCTACTACT
TCAGAGAAAGTCAACCGGAAAGAAGCGAGCTCCGATTCATCTGAAGCTGC
CAGAACGGCTTGGAAACTGTGGGTAACTCATCTAGAGAAGGTGAGGCCTG
ATGTCTTCACTGGACCGGAAGCCAGACTTGAAATTCGTTCAAGAGTTCGG
CAAGGGAAGTCTGCTTATCATGGAATTGGGATTACAGAAGCGAACTGCCT
CGGTTTGCGCAAGGTCCTGAAAGAATTTTCGAAGCAAAAGATGACAATTG
CAAAGCCTTTGAAGACAAAGAAGGAACTAATTACTACAGTTGCACAGTTT
CTGAGGTGGTGCGTCGTCAGCTCTGTTTGCAAGAAATTGGACGTATGGAA
AGAAAAAGCACTCTTTGCCGGTCTTTCTCACATTCATCTGGTTGCAAAGT
TTGTTTCTTACTTCCAAGAGCGTTGTGAACGTCGCACAGTGAGGAGCAAG
GCAGCGCATCTTATTCTGGTGTGCGATGCGGCTCCTTCAGAATGCGCTAA
GGACCAAGAGAATGGAATTGTTACCGTATCTCTGCTGCTCCAGGCTATAA
GTGGCAAGCAAACCAGACCGACTGCGTGCAGGATTCAGCGCCGCCATCTG
CAACTGTCGGACAGTGATGAAGAATAA