Ggra1114.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1114.t1
Unique NameGgra1114.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:78582..79396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH176CT
PFAMsLongin,SHNi-TPR,Synaptobrevin
Max annot lvl2759|Eukaryota
KEGG koko:K08511,ko:K08515
KEGG Pathwayko04130,map04130
GOsGO:0000149,GO:0000323,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006887,GO:0006906,GO:0006996,GO:0007034,GO:0007041,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030139,GO:0030659,GO:0030666,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045335,GO:0046903,GO:0046907,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852
Evalue1.04e-27
EggNOG OGsCOG5143@1|root,KOG0859@2759|Eukaryota
DescriptionSNAP receptor activity
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1114Ggra1114Gracilaria gracilis GNS1m malegenetig00000945_pilon 78582..79396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1114.t1Ggra1114.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 78582..79396 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1114.t1.stop1Ggra1114.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 78582..78584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1114.t1.CDS1Ggra1114.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 78582..79048 -
Ggra1114.t1.CDS2Ggra1114.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000945_pilon 79174..79396 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1114.t1.exon1Ggra1114.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 78582..79048 -
Ggra1114.t1.exon2Ggra1114.t1.exon2Gracilaria gracilis GNS1m maleexontig00000945_pilon 79174..79396 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1114.t1.intron1Ggra1114.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000945_pilon 79049..79173 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1114.t1.start1Ggra1114.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 79394..79396 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1114.t1 ID=Ggra1114.t1|Name=Ggra1114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MSTIFYIAAARVADHCCFAQHVVPCSNHTAAAVFEQKLQKILLSPQLKHN
NRLTIVDDHQRHIHYEADPALIFLVVTAASYPQRTAFELLSAARTDFDQL
FAPEMGKATPGALSKRARPVLERLVQHYHHVPNLDKISNVQHQVEQVKGM
MQHNIQSALHNTDNLETLLDISDNMKNEAYSFNRSTAQVKNRMQWKDFQM
KLLIAFLVLLIVSIVIASVVVHRKGQQQA*
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spliced messenger RNA

>Ggra1114.t1 ID=Ggra1114.t1|Name=Ggra1114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000945_pilon:78582..79396- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTATCTTCTACATTGCCGCCGCGCGCGTCGCCGACCATTGCTG
CTTCGCGCAGCACGTGGTGCCCTGCTCCAACCACACCGCCGCCGCCGTCT
TTGAGCAAAAGTTGCAAAAGATCCTGCTCAGTCCGCAGCTCAAGCACAAC
AACCGCCTCACCATCGTGGACGACCACCAGCGCCACATTCACTACGAAGC
CGACCCGGCGCTCATCTTCCTCGTCGTCACAGCCGCGTCGTATCCGCAAC
GCACCGCCTTCGAGCTGCTGTCCGCCGCGCGCACCGACTTTGACCAGCTC
TTTGCGCCCGAGATGGGAAAGGCCACGCCCGGCGCGCTGTCCAAGCGCGC
GCGGCCCGTGTTGGAGCGTCTGGTGCAGCATTACCACCACGTGCCCAATC
TGGACAAGATTTCCAACGTGCAGCACCAGGTGGAGCAAGTCAAGGGCATG
ATGCAGCACAACATCCAATCGGCGCTGCACAACACTGACAACCTGGAGAC
GCTGCTCGATATCAGCGACAATATGAAGAACGAGGCGTACAGCTTCAACC
GCTCCACCGCGCAGGTCAAGAACCGAATGCAGTGGAAGGACTTTCAGATG
AAGCTGCTCATTGCCTTTCTTGTGCTGCTCATTGTATCCATCGTCATCGC
CTCTGTGGTGGTCCACCGCAAGGGGCAACAACAAGCGTAA
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protein sequence of Ggra1114.t1

>Ggra1114.t1 ID=Ggra1114.t1|Name=Ggra1114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MSTIFYIAAARVADHCCFAQHVVPCSNHTAAAVFEQKLQKILLSPQLKHN
NRLTIVDDHQRHIHYEADPALIFLVVTAASYPQRTAFELLSAARTDFDQL
FAPEMGKATPGALSKRARPVLERLVQHYHHVPNLDKISNVQHQVEQVKGM
MQHNIQSALHNTDNLETLLDISDNMKNEAYSFNRSTAQVKNRMQWKDFQM
KLLIAFLVLLIVSIVIASVVVHRKGQQQA*
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mRNA from alignment at tig00000945_pilon:78582..79396-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1114.t1 ID=Ggra1114.t1|Name=Ggra1114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=815bp|location=Sequence derived from alignment at tig00000945_pilon:78582..79396- (Gracilaria gracilis GNS1m male)
ATGAGCACTATCTTCTACATTGCCGCCGCGCGCGTCGCCGACCATTGCTG
CTTCGCGCAGCACGTGGTGCCCTGCTCCAACCACACCGCCGCCGCCGTCT
TTGAGCAAAAGTTGCAAAAGATCCTGCTCAGTCCGCAGCTCAAGCACAAC
AACCGCCTCACCATCGTGGACGACCACCAGCGCCACATTCACTACGAAGC
CGACCCGGCGCTCATCTTCCTCGGTAAGTTGCGTCACATCGCCCAACCAT
TGCCTTGTTGCCGCCACCCGCTGTATACTATAGTAGTTTAACACCAGCAC
GCTCACCACGTGCATCCCTTCACCACACGCGTGCGCAACCAATCACAGTC
GTCACAGCCGCGTCGTATCCGCAACGCACCGCCTTCGAGCTGCTGTCCGC
CGCGCGCACCGACTTTGACCAGCTCTTTGCGCCCGAGATGGGAAAGGCCA
CGCCCGGCGCGCTGTCCAAGCGCGCGCGGCCCGTGTTGGAGCGTCTGGTG
CAGCATTACCACCACGTGCCCAATCTGGACAAGATTTCCAACGTGCAGCA
CCAGGTGGAGCAAGTCAAGGGCATGATGCAGCACAACATCCAATCGGCGC
TGCACAACACTGACAACCTGGAGACGCTGCTCGATATCAGCGACAATATG
AAGAACGAGGCGTACAGCTTCAACCGCTCCACCGCGCAGGTCAAGAACCG
AATGCAGTGGAAGGACTTTCAGATGAAGCTGCTCATTGCCTTTCTTGTGC
TGCTCATTGTATCCATCGTCATCGCCTCTGTGGTGGTCCACCGCAAGGGG
CAACAACAAGCGTAA
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Coding sequence (CDS) from alignment at tig00000945_pilon:78582..79396-

>Ggra1114.t1 ID=Ggra1114.t1|Name=Ggra1114.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000945_pilon:78582..79396- (Gracilaria gracilis GNS1m male)
ATGAGCACTATCTTCTACATTGCCGCCGCGCGCGTCGCCGACCATTGCTG
CTTCGCGCAGCACGTGGTGCCCTGCTCCAACCACACCGCCGCCGCCGTCT
TTGAGCAAAAGTTGCAAAAGATCCTGCTCAGTCCGCAGCTCAAGCACAAC
AACCGCCTCACCATCGTGGACGACCACCAGCGCCACATTCACTACGAAGC
CGACCCGGCGCTCATCTTCCTCGTCGTCACAGCCGCGTCGTATCCGCAAC
GCACCGCCTTCGAGCTGCTGTCCGCCGCGCGCACCGACTTTGACCAGCTC
TTTGCGCCCGAGATGGGAAAGGCCACGCCCGGCGCGCTGTCCAAGCGCGC
GCGGCCCGTGTTGGAGCGTCTGGTGCAGCATTACCACCACGTGCCCAATC
TGGACAAGATTTCCAACGTGCAGCACCAGGTGGAGCAAGTCAAGGGCATG
ATGCAGCACAACATCCAATCGGCGCTGCACAACACTGACAACCTGGAGAC
GCTGCTCGATATCAGCGACAATATGAAGAACGAGGCGTACAGCTTCAACC
GCTCCACCGCGCAGGTCAAGAACCGAATGCAGTGGAAGGACTTTCAGATG
AAGCTGCTCATTGCCTTTCTTGTGCTGCTCATTGTATCCATCGTCATCGC
CTCTGTGGTGGTCCACCGCAAGGGGCAACAACAAGCGTAA
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