Ggra11138.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11138.t1
Unique NameGgra11138.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length427
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:109323..110679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1120792.JAFV01000001_gene1548
Preferred nametuf
PFAMsGTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02358
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue1.61e-223
EggNOG OGsCOG0050@1|root,COG0050@2|Bacteria,1MVC0@1224|Proteobacteria,2TQP8@28211|Alphaproteobacteria,36XUJ@31993|Methylocystaceae
DescriptionElongation factor Tu C-terminal domain
COG categoryJ
BRITEko00000,ko03012,ko03029,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11138Ggra11138Gracilaria gracilis GNS1m malegenetig00000110_pilon 109323..110679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11138.t1Ggra11138.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 109323..110679 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11138.t1.stop1Ggra11138.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 109323..109325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11138.t1.CDS1Ggra11138.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 109323..110438 -
Ggra11138.t1.CDS2Ggra11138.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 110515..110679 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11138.t1.exon1Ggra11138.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 109323..110438 -
Ggra11138.t1.exon2Ggra11138.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 110515..110679 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11138.t1.intron1Ggra11138.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 110439..110514 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11138.t1.start1Ggra11138.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 110677..110679 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11138.t1 ID=Ggra11138.t1|Name=Ggra11138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=427bp
MQRFSSVSARLVRAALAPAASAPGYWQKRAFATEAFQRTKPHINVGTIGH
VDHGKTTLTAAITKVLAETGGATFTDYEQIDKAPEEKSRGITISTAHVEY
ETSTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI
LLARQVGVPHIVVFLNKCDVVDDEELVELVEMEVRDLLSFYKFPGEDTPI
VKGSALQALQGGDVALGRDAVLKLMANVDDYIPEPKRALDKPFLMSVEDV
FSIQGRGTVVTGRVEQGTIKAGQEVEIVGLKDTVKTACTGVEMFKKSLDV
GQAGDNLGCLLRGIKRDDVHRGQVLCEPGSVKPYSKFEAEIYCLTKEEGG
RHKPFFSNYSPQFYVRTADVTGKFVLPEDVQMVMPGDNVTCQAEILSKVA
MDEGLRFAVREGGRTVGAGVVTKLIE*
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spliced messenger RNA

>Ggra11138.t1 ID=Ggra11138.t1|Name=Ggra11138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000110_pilon:109323..110679- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGATTTTCGTCCGTTAGCGCCCGTCTGGTGCGCGCCGCTCTGGC
CCCGGCCGCGTCTGCGCCCGGGTACTGGCAGAAACGCGCCTTCGCCACCG
AGGCGTTCCAGCGCACGAAGCCTCATATCAATGTCGGCACCATAGGTCAC
GTCGATCACGGCAAGACTACGCTCACTGCCGCCATCACCAAAGTACTCGC
CGAAACCGGAGGCGCTACCTTCACTGACTACGAGCAGATCGACAAGGCCC
CGGAAGAGAAGTCGCGTGGTATCACTATCTCTACAGCCCATGTCGAGTAT
GAGACAAGTACCAGACATTATGCCCACGTCGATTGTCCCGGACATGCCGA
CTATGTCAAGAACATGATCACAGGAGCAGCTCAGATGGATGGCGCCATTC
TCGTTGTCTCTGCCGCGGACGGGCCGATGCCGCAGACAAGGGAACATATC
TTGTTAGCGCGTCAAGTTGGAGTGCCACACATCGTCGTTTTCCTTAACAA
GTGCGACGTGGTTGATGATGAGGAGCTGGTGGAGCTTGTGGAAATGGAAG
TCCGTGATTTGCTCTCTTTCTACAAGTTCCCTGGAGAAGACACCCCTATT
GTGAAGGGAAGCGCTTTACAGGCCTTGCAAGGTGGCGATGTCGCGCTTGG
TCGCGACGCTGTTCTTAAGCTCATGGCCAACGTCGACGATTACATTCCAG
AACCTAAACGAGCCTTAGATAAGCCCTTCCTTATGAGTGTGGAGGATGTC
TTTTCGATTCAGGGACGTGGTACCGTCGTCACCGGCCGAGTTGAACAGGG
AACCATCAAGGCTGGTCAAGAAGTGGAGATTGTTGGTCTCAAAGACACCG
TCAAGACCGCTTGTACCGGTGTTGAGATGTTTAAGAAGAGTCTAGACGTT
GGACAAGCTGGAGACAATCTTGGATGTCTGCTGCGCGGTATTAAGCGCGA
CGACGTGCATCGCGGCCAAGTTCTCTGTGAACCTGGCTCAGTTAAACCGT
ATAGCAAGTTTGAAGCTGAGATTTACTGTCTAACCAAGGAAGAGGGAGGT
CGTCACAAGCCTTTTTTTTCAAACTACAGTCCACAATTCTATGTTAGAAC
GGCTGATGTAACGGGCAAGTTCGTCCTTCCTGAGGATGTGCAAATGGTTA
TGCCAGGAGATAACGTTACATGTCAGGCAGAGATCCTTAGTAAGGTTGCT
ATGGATGAGGGGTTAAGATTCGCAGTCAGGGAAGGAGGTAGGACAGTCGG
GGCGGGCGTGGTCACCAAGTTGATAGAGTAA
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protein sequence of Ggra11138.t1

>Ggra11138.t1 ID=Ggra11138.t1|Name=Ggra11138.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MQRFSSVSARLVRAALAPAASAPGYWQKRAFATEAFQRTKPHINVGTIGH
VDHGKTTLTAAITKVLAETGGATFTDYEQIDKAPEEKSRGITISTAHVEY
ETSTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI
LLARQVGVPHIVVFLNKCDVVDDEELVELVEMEVRDLLSFYKFPGEDTPI
VKGSALQALQGGDVALGRDAVLKLMANVDDYIPEPKRALDKPFLMSVEDV
FSIQGRGTVVTGRVEQGTIKAGQEVEIVGLKDTVKTACTGVEMFKKSLDV
GQAGDNLGCLLRGIKRDDVHRGQVLCEPGSVKPYSKFEAEIYCLTKEEGG
RHKPFFSNYSPQFYVRTADVTGKFVLPEDVQMVMPGDNVTCQAEILSKVA
MDEGLRFAVREGGRTVGAGVVTKLIE*
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mRNA from alignment at tig00000110_pilon:109323..110679-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11138.t1 ID=Ggra11138.t1|Name=Ggra11138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1357bp|location=Sequence derived from alignment at tig00000110_pilon:109323..110679- (Gracilaria gracilis GNS1m male)
ATGCAGCGATTTTCGTCCGTTAGCGCCCGTCTGGTGCGCGCCGCTCTGGC
CCCGGCCGCGTCTGCGCCCGGGTACTGGCAGAAACGCGCCTTCGCCACCG
AGGCGTTCCAGCGCACGAAGCCTCATATCAATGTCGGCACCATAGGTCAC
GTCGATCACGGCAAGGTACGTTGATTTCTTGCGAACCGCCATCTGTTGTT
CCGATGTCCCCAATCGAGGCCCATTTCTTACCAATACGCAGACTACGCTC
ACTGCCGCCATCACCAAAGTACTCGCCGAAACCGGAGGCGCTACCTTCAC
TGACTACGAGCAGATCGACAAGGCCCCGGAAGAGAAGTCGCGTGGTATCA
CTATCTCTACAGCCCATGTCGAGTATGAGACAAGTACCAGACATTATGCC
CACGTCGATTGTCCCGGACATGCCGACTATGTCAAGAACATGATCACAGG
AGCAGCTCAGATGGATGGCGCCATTCTCGTTGTCTCTGCCGCGGACGGGC
CGATGCCGCAGACAAGGGAACATATCTTGTTAGCGCGTCAAGTTGGAGTG
CCACACATCGTCGTTTTCCTTAACAAGTGCGACGTGGTTGATGATGAGGA
GCTGGTGGAGCTTGTGGAAATGGAAGTCCGTGATTTGCTCTCTTTCTACA
AGTTCCCTGGAGAAGACACCCCTATTGTGAAGGGAAGCGCTTTACAGGCC
TTGCAAGGTGGCGATGTCGCGCTTGGTCGCGACGCTGTTCTTAAGCTCAT
GGCCAACGTCGACGATTACATTCCAGAACCTAAACGAGCCTTAGATAAGC
CCTTCCTTATGAGTGTGGAGGATGTCTTTTCGATTCAGGGACGTGGTACC
GTCGTCACCGGCCGAGTTGAACAGGGAACCATCAAGGCTGGTCAAGAAGT
GGAGATTGTTGGTCTCAAAGACACCGTCAAGACCGCTTGTACCGGTGTTG
AGATGTTTAAGAAGAGTCTAGACGTTGGACAAGCTGGAGACAATCTTGGA
TGTCTGCTGCGCGGTATTAAGCGCGACGACGTGCATCGCGGCCAAGTTCT
CTGTGAACCTGGCTCAGTTAAACCGTATAGCAAGTTTGAAGCTGAGATTT
ACTGTCTAACCAAGGAAGAGGGAGGTCGTCACAAGCCTTTTTTTTCAAAC
TACAGTCCACAATTCTATGTTAGAACGGCTGATGTAACGGGCAAGTTCGT
CCTTCCTGAGGATGTGCAAATGGTTATGCCAGGAGATAACGTTACATGTC
AGGCAGAGATCCTTAGTAAGGTTGCTATGGATGAGGGGTTAAGATTCGCA
GTCAGGGAAGGAGGTAGGACAGTCGGGGCGGGCGTGGTCACCAAGTTGAT
AGAGTAA
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Coding sequence (CDS) from alignment at tig00000110_pilon:109323..110679-

>Ggra11138.t1 ID=Ggra11138.t1|Name=Ggra11138.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000110_pilon:109323..110679- (Gracilaria gracilis GNS1m male)
ATGCAGCGATTTTCGTCCGTTAGCGCCCGTCTGGTGCGCGCCGCTCTGGC
CCCGGCCGCGTCTGCGCCCGGGTACTGGCAGAAACGCGCCTTCGCCACCG
AGGCGTTCCAGCGCACGAAGCCTCATATCAATGTCGGCACCATAGGTCAC
GTCGATCACGGCAAGACTACGCTCACTGCCGCCATCACCAAAGTACTCGC
CGAAACCGGAGGCGCTACCTTCACTGACTACGAGCAGATCGACAAGGCCC
CGGAAGAGAAGTCGCGTGGTATCACTATCTCTACAGCCCATGTCGAGTAT
GAGACAAGTACCAGACATTATGCCCACGTCGATTGTCCCGGACATGCCGA
CTATGTCAAGAACATGATCACAGGAGCAGCTCAGATGGATGGCGCCATTC
TCGTTGTCTCTGCCGCGGACGGGCCGATGCCGCAGACAAGGGAACATATC
TTGTTAGCGCGTCAAGTTGGAGTGCCACACATCGTCGTTTTCCTTAACAA
GTGCGACGTGGTTGATGATGAGGAGCTGGTGGAGCTTGTGGAAATGGAAG
TCCGTGATTTGCTCTCTTTCTACAAGTTCCCTGGAGAAGACACCCCTATT
GTGAAGGGAAGCGCTTTACAGGCCTTGCAAGGTGGCGATGTCGCGCTTGG
TCGCGACGCTGTTCTTAAGCTCATGGCCAACGTCGACGATTACATTCCAG
AACCTAAACGAGCCTTAGATAAGCCCTTCCTTATGAGTGTGGAGGATGTC
TTTTCGATTCAGGGACGTGGTACCGTCGTCACCGGCCGAGTTGAACAGGG
AACCATCAAGGCTGGTCAAGAAGTGGAGATTGTTGGTCTCAAAGACACCG
TCAAGACCGCTTGTACCGGTGTTGAGATGTTTAAGAAGAGTCTAGACGTT
GGACAAGCTGGAGACAATCTTGGATGTCTGCTGCGCGGTATTAAGCGCGA
CGACGTGCATCGCGGCCAAGTTCTCTGTGAACCTGGCTCAGTTAAACCGT
ATAGCAAGTTTGAAGCTGAGATTTACTGTCTAACCAAGGAAGAGGGAGGT
CGTCACAAGCCTTTTTTTTCAAACTACAGTCCACAATTCTATGTTAGAAC
GGCTGATGTAACGGGCAAGTTCGTCCTTCCTGAGGATGTGCAAATGGTTA
TGCCAGGAGATAACGTTACATGTCAGGCAGAGATCCTTAGTAAGGTTGCT
ATGGATGAGGGGTTAAGATTCGCAGTCAGGGAAGGAGGTAGGACAGTCGG
GGCGGGCGTGGTCACCAAGTTGATAGAGTAA
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