Ggra11123.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11123.t1
Unique NameGgra11123.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:67993..68532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002586608.1
Preferred nameUBE2M
PFAMsUQ_con
Max annot lvl33208|Metazoa
KEGG koko:K10579
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
Evalue1.14e-69
EggNOG OGsKOG0420@1|root,KOG0420@2759|Eukaryota,38GRW@33154|Opisthokonta,3BGX6@33208|Metazoa,3CRHA@33213|Bilateria,47ZFU@7711|Chordata
DescriptionNEDD8 transferase activity
COG categoryO
BRITEko00000,ko00001,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11123Ggra11123Gracilaria gracilis GNS1m malegenetig00000110_pilon 67993..68532 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11123.t1.stop1Ggra11123.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 67993..67995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11123.t1.CDS1Ggra11123.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 67993..68532 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11123.t1.exon1Ggra11123.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 67993..68532 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11123.t1.start1Ggra11123.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 68530..68532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11123.t1Ggra11123.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 67993..68532 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11123.t1 ID=Ggra11123.t1|Name=Ggra11123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MFRLSQEVKETRIRRESGAPVPKAGHIRVQKDINELDIPPSMNVSFPDPD
DIMNFNVALSPEEGYYHTGTFQFSISVPEDYPHKPPKVKCSTLVYHPNID
LDGNVCLNILRQDWKPVLSLSSILYGLQLLFLEPNPDDPLNKDAATLLKR
DSHAFQRNVAISLRGGYLAGTYFPSARRR*
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spliced messenger RNA

>Ggra11123.t1 ID=Ggra11123.t1|Name=Ggra11123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000110_pilon:67993..68532- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGTCTCTCCCAGGAAGTCAAGGAGACTCGAATCCGCCGCGAGTC
CGGCGCGCCCGTCCCCAAGGCCGGCCACATCCGCGTGCAGAAGGACATCA
ACGAGCTCGACATCCCCCCCTCCATGAACGTCTCCTTCCCGGACCCAGAT
GACATCATGAACTTCAACGTAGCGCTCTCCCCTGAGGAGGGCTACTACCA
CACTGGCACCTTCCAGTTCTCCATCTCCGTGCCCGAGGACTACCCGCACA
AGCCGCCCAAGGTCAAGTGCTCCACGCTCGTTTACCACCCCAACATCGAT
CTCGACGGCAACGTGTGCCTCAACATCCTCCGCCAGGACTGGAAGCCCGT
GCTCTCACTTTCATCCATTCTGTACGGTCTGCAGCTGCTCTTCCTGGAGC
CCAACCCGGACGACCCGCTCAACAAGGATGCCGCCACTCTGCTCAAGCGC
GACAGCCATGCTTTCCAACGCAACGTCGCCATCTCTTTGCGCGGCGGTTA
TCTGGCCGGAACTTACTTCCCCTCTGCCCGTCGCCGGTGA
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protein sequence of Ggra11123.t1

>Ggra11123.t1 ID=Ggra11123.t1|Name=Ggra11123.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MFRLSQEVKETRIRRESGAPVPKAGHIRVQKDINELDIPPSMNVSFPDPD
DIMNFNVALSPEEGYYHTGTFQFSISVPEDYPHKPPKVKCSTLVYHPNID
LDGNVCLNILRQDWKPVLSLSSILYGLQLLFLEPNPDDPLNKDAATLLKR
DSHAFQRNVAISLRGGYLAGTYFPSARRR*
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mRNA from alignment at tig00000110_pilon:67993..68532-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11123.t1 ID=Ggra11123.t1|Name=Ggra11123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000110_pilon:67993..68532- (Gracilaria gracilis GNS1m male)
ATGTTCCGTCTCTCCCAGGAAGTCAAGGAGACTCGAATCCGCCGCGAGTC
CGGCGCGCCCGTCCCCAAGGCCGGCCACATCCGCGTGCAGAAGGACATCA
ACGAGCTCGACATCCCCCCCTCCATGAACGTCTCCTTCCCGGACCCAGAT
GACATCATGAACTTCAACGTAGCGCTCTCCCCTGAGGAGGGCTACTACCA
CACTGGCACCTTCCAGTTCTCCATCTCCGTGCCCGAGGACTACCCGCACA
AGCCGCCCAAGGTCAAGTGCTCCACGCTCGTTTACCACCCCAACATCGAT
CTCGACGGCAACGTGTGCCTCAACATCCTCCGCCAGGACTGGAAGCCCGT
GCTCTCACTTTCATCCATTCTGTACGGTCTGCAGCTGCTCTTCCTGGAGC
CCAACCCGGACGACCCGCTCAACAAGGATGCCGCCACTCTGCTCAAGCGC
GACAGCCATGCTTTCCAACGCAACGTCGCCATCTCTTTGCGCGGCGGTTA
TCTGGCCGGAACTTACTTCCCCTCTGCCCGTCGCCGGTGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:67993..68532-

>Ggra11123.t1 ID=Ggra11123.t1|Name=Ggra11123.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000110_pilon:67993..68532- (Gracilaria gracilis GNS1m male)
ATGTTCCGTCTCTCCCAGGAAGTCAAGGAGACTCGAATCCGCCGCGAGTC
CGGCGCGCCCGTCCCCAAGGCCGGCCACATCCGCGTGCAGAAGGACATCA
ACGAGCTCGACATCCCCCCCTCCATGAACGTCTCCTTCCCGGACCCAGAT
GACATCATGAACTTCAACGTAGCGCTCTCCCCTGAGGAGGGCTACTACCA
CACTGGCACCTTCCAGTTCTCCATCTCCGTGCCCGAGGACTACCCGCACA
AGCCGCCCAAGGTCAAGTGCTCCACGCTCGTTTACCACCCCAACATCGAT
CTCGACGGCAACGTGTGCCTCAACATCCTCCGCCAGGACTGGAAGCCCGT
GCTCTCACTTTCATCCATTCTGTACGGTCTGCAGCTGCTCTTCCTGGAGC
CCAACCCGGACGACCCGCTCAACAAGGATGCCGCCACTCTGCTCAAGCGC
GACAGCCATGCTTTCCAACGCAACGTCGCCATCTCTTTGCGCGGCGGTTA
TCTGGCCGGAACTTACTTCCCCTCTGCCCGTCGCCGGTGA
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