Ggra11119.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11119.t1
Unique NameGgra11119.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:59284..61245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010692284.1
PFAMsNTP_transf_2,PAP_assoc
Max annot lvl35493|Streptophyta
KEGG koko:K13291
Evalue7.61e-22
EggNOG OGsCOG5260@1|root,KOG2277@2759|Eukaryota,37MNS@33090|Viridiplantae,3GE51@35493|Streptophyta
EC2.7.7.52
DescriptionPoly(A) RNA polymerase
COG categoryD
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11119Ggra11119Gracilaria gracilis GNS1m malegenetig00000110_pilon 59284..61245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11119.t1Ggra11119.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 59284..61245 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11119.t1.stop1Ggra11119.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 59284..59286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11119.t1.CDS1Ggra11119.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 59284..60232 -
Ggra11119.t1.CDS2Ggra11119.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 60293..60528 -
Ggra11119.t1.CDS3Ggra11119.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000110_pilon 60991..61245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11119.t1.exon1Ggra11119.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 59284..60232 -
Ggra11119.t1.exon2Ggra11119.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 60293..60528 -
Ggra11119.t1.exon3Ggra11119.t1.exon3Gracilaria gracilis GNS1m maleexontig00000110_pilon 60991..61245 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11119.t1.intron1Ggra11119.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 60233..60292 -
Ggra11119.t1.intron2Ggra11119.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000110_pilon 60529..60990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11119.t1.start1Ggra11119.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 61243..61245 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11119.t1 ID=Ggra11119.t1|Name=Ggra11119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp
MAPSQPPPPPQPQPQPPPLPSGMTAPRLHNYLRHALAQRSVNRRLLIVAH
NGIVAGQMRVSDARLHDVMAQCFRHIEYPAAADYHSMQMLVTIAVTVHVP
KMAQQLTDGVVSVEAGCRFGTKDDVTEEGPIYQKARNRAARLALSQLHDM
STKIEKACFEQLRVAFEKAKTMILSEAKGALYGASVSLYGSVPTGLILGE
SDIDVSVTVPGLFEPYKDSDPHRIKRKTIDVLKFLAGHMKQEKMENVFVV
TQARVPVLRYIDRETQVNVDVTLNNDRSLLVSRLIRRHTQKDARVWQLCM
LVKYWAKQRKLCGVAQGHINSMGWVIMVIFFLQHLVHPRIAGLYRPKRTR
CNFKAVVEEPWRDSRSSGLENEQHTHMLLMEFFRVYGTEFDFATEAISMT
LPYRERTKYISKGAMDRPLFIEQPLMEGKNVVDYVSRQTLELVREQMSDT
YRMLSSQRTDVANAFAVRQLRRSELYFAR*
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spliced messenger RNA

>Ggra11119.t1 ID=Ggra11119.t1|Name=Ggra11119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000110_pilon:59284..61245- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCTCGCAGCCGCCGCCGCCGCCGCAGCCGCAGCCGCAGCCGCC
GCCGCTGCCAAGCGGCATGACGGCGCCGCGGCTGCACAACTACCTGCGCC
ACGCGCTGGCGCAGCGTAGCGTGAACCGCCGCCTGCTCATCGTCGCGCAC
AACGGCATTGTGGCCGGCCAGATGCGCGTGTCGGACGCGCGTCTGCACGA
CGTGATGGCGCAGTGCTTTCGCCACATCGAGTACCCGGCCGCCGCCGACT
ACCACTCGATGCAAATGCTCGTCACTATAGCCGTTACCGTGCATGTGCCG
AAGATGGCGCAGCAGCTCACGGACGGTGTCGTCAGCGTTGAAGCGGGCTG
TCGATTTGGTACAAAGGATGATGTCACGGAAGAGGGGCCTATATACCAAA
AGGCACGGAACAGGGCTGCAAGGTTGGCGCTTTCGCAGCTGCATGACATG
AGCACAAAGATAGAAAAAGCCTGTTTTGAACAGTTGAGAGTGGCGTTCGA
GAAGGCCAAGACAATGATCCTCAGTGAGGCAAAAGGCGCCTTGTATGGAG
CGTCTGTTTCGCTCTACGGCTCGGTGCCCACCGGCTTGATACTCGGAGAG
TCTGATATCGACGTGTCGGTAACAGTTCCGGGCCTGTTCGAGCCATACAA
GGACAGCGACCCGCATCGAATCAAGCGCAAAACTATTGACGTGCTCAAGT
TTCTGGCGGGGCACATGAAGCAGGAGAAGATGGAAAACGTGTTTGTGGTG
ACACAGGCACGAGTGCCGGTGTTGCGATACATTGATAGAGAAACTCAGGT
GAACGTGGACGTGACGTTAAACAACGACCGTAGTTTACTTGTTTCGAGAC
TGATTCGGAGGCATACACAAAAAGATGCGCGCGTGTGGCAACTGTGCATG
CTTGTCAAATACTGGGCCAAACAACGCAAATTATGCGGCGTTGCACAGGG
CCACATTAACTCCATGGGCTGGGTGATCATGGTGATCTTCTTCCTGCAGC
ACCTGGTTCATCCACGCATCGCGGGTTTGTACCGTCCGAAGAGGACGCGA
TGCAACTTCAAAGCGGTGGTGGAGGAACCGTGGCGCGACAGCAGAAGCAG
CGGGCTTGAAAATGAGCAGCACACGCACATGTTGCTGATGGAGTTTTTCC
GCGTGTACGGCACGGAGTTTGACTTTGCAACGGAGGCAATCTCAATGACG
CTGCCGTACCGGGAGCGCACCAAGTACATATCAAAGGGAGCGATGGACAG
GCCGCTGTTCATCGAACAGCCGCTGATGGAGGGAAAGAACGTAGTGGACT
ACGTCTCCAGGCAGACGCTGGAACTGGTTCGCGAGCAAATGAGCGACACC
TATCGCATGCTGTCGTCACAGCGAACGGACGTTGCCAACGCCTTCGCTGT
GCGCCAGCTGCGGCGCTCCGAGCTCTACTTTGCGCGCTGA
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protein sequence of Ggra11119.t1

>Ggra11119.t1 ID=Ggra11119.t1|Name=Ggra11119.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=480bp
MAPSQPPPPPQPQPQPPPLPSGMTAPRLHNYLRHALAQRSVNRRLLIVAH
NGIVAGQMRVSDARLHDVMAQCFRHIEYPAAADYHSMQMLVTIAVTVHVP
KMAQQLTDGVVSVEAGCRFGTKDDVTEEGPIYQKARNRAARLALSQLHDM
STKIEKACFEQLRVAFEKAKTMILSEAKGALYGASVSLYGSVPTGLILGE
SDIDVSVTVPGLFEPYKDSDPHRIKRKTIDVLKFLAGHMKQEKMENVFVV
TQARVPVLRYIDRETQVNVDVTLNNDRSLLVSRLIRRHTQKDARVWQLCM
LVKYWAKQRKLCGVAQGHINSMGWVIMVIFFLQHLVHPRIAGLYRPKRTR
CNFKAVVEEPWRDSRSSGLENEQHTHMLLMEFFRVYGTEFDFATEAISMT
LPYRERTKYISKGAMDRPLFIEQPLMEGKNVVDYVSRQTLELVREQMSDT
YRMLSSQRTDVANAFAVRQLRRSELYFAR*
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mRNA from alignment at tig00000110_pilon:59284..61245-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11119.t1 ID=Ggra11119.t1|Name=Ggra11119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000110_pilon:59284..61245- (Gracilaria gracilis GNS1m male)
ATGGCGCCCTCGCAGCCGCCGCCGCCGCCGCAGCCGCAGCCGCAGCCGCC
GCCGCTGCCAAGCGGCATGACGGCGCCGCGGCTGCACAACTACCTGCGCC
ACGCGCTGGCGCAGCGTAGCGTGAACCGCCGCCTGCTCATCGTCGCGCAC
AACGGCATTGTGGCCGGCCAGATGCGCGTGTCGGACGCGCGTCTGCACGA
CGTGATGGCGCAGTGCTTTCGCCACATCGAGTACCCGGCCGCCGCCGACT
ACCACGTGCGCCGCGCCCTGCTGCTGCGCGCGCCCGCGCCGCCGCCGCCG
CAGTCGCAGTCGCCGCAGCAGTCGCCGCCGCGCTCGCCGCAGCCGCAGTC
GCCGCCGCAGTCGCCGCCGTCGCGCTCGCCGCAGCCGCAGCCGCAGTCGC
CGCCGCGCTCGCCGCCGCCGCCCGCGCCCAACCTGCTCAAGAGGGCGCGC
AGCCGCTTCGCCGCGCAGTCGCTGTCGCAGCACGCCGCTCATACGTCTCA
CCAGCCGCGCAAGCAGAGGCGGCTGCACGAGCCGAATGAGCCGGCCATTC
AGCCGATGAGTCCGCCGCGCCCGGAGCACGTTCGCGACTCGCAGCCCTAT
GACAACGACCGCTATATGCCGTCGTTTCGCGCCGCCATTCGAAGGATAGA
CACCGAGTGTCATCACAACGGTGCATCGTCGCCGGAGGTGCGCTTCTCGC
ATCAAGTGCGCCAGCAGTCGATGCAAATGCTCGTCACTATAGCCGTTACC
GTGCATGTGCCGAAGATGGCGCAGCAGCTCACGGACGGTGTCGTCAGCGT
TGAAGCGGGCTGTCGATTTGGTACAAAGGATGATGTCACGGAAGAGGGGC
CTATATACCAAAAGGCACGGAACAGGGCTGCAAGGTTGGCGCTTTCGCAG
CTGCATGACATGAGCACAAAGATAGAAAAAGCCTGTTTTGAACAGTTGAG
AGTGTACGTGGACGGCCTTATATTCGGGTGGAGAACGCGAGATTTCTCAA
CTCATTGTTATAGGGCGTTCGAGAAGGCCAAGACAATGATCCTCAGTGAG
GCAAAAGGCGCCTTGTATGGAGCGTCTGTTTCGCTCTACGGCTCGGTGCC
CACCGGCTTGATACTCGGAGAGTCTGATATCGACGTGTCGGTAACAGTTC
CGGGCCTGTTCGAGCCATACAAGGACAGCGACCCGCATCGAATCAAGCGC
AAAACTATTGACGTGCTCAAGTTTCTGGCGGGGCACATGAAGCAGGAGAA
GATGGAAAACGTGTTTGTGGTGACACAGGCACGAGTGCCGGTGTTGCGAT
ACATTGATAGAGAAACTCAGGTGAACGTGGACGTGACGTTAAACAACGAC
CGTAGTTTACTTGTTTCGAGACTGATTCGGAGGCATACACAAAAAGATGC
GCGCGTGTGGCAACTGTGCATGCTTGTCAAATACTGGGCCAAACAACGCA
AATTATGCGGCGTTGCACAGGGCCACATTAACTCCATGGGCTGGGTGATC
ATGGTGATCTTCTTCCTGCAGCACCTGGTTCATCCACGCATCGCGGGTTT
GTACCGTCCGAAGAGGACGCGATGCAACTTCAAAGCGGTGGTGGAGGAAC
CGTGGCGCGACAGCAGAAGCAGCGGGCTTGAAAATGAGCAGCACACGCAC
ATGTTGCTGATGGAGTTTTTCCGCGTGTACGGCACGGAGTTTGACTTTGC
AACGGAGGCAATCTCAATGACGCTGCCGTACCGGGAGCGCACCAAGTACA
TATCAAAGGGAGCGATGGACAGGCCGCTGTTCATCGAACAGCCGCTGATG
GAGGGAAAGAACGTAGTGGACTACGTCTCCAGGCAGACGCTGGAACTGGT
TCGCGAGCAAATGAGCGACACCTATCGCATGCTGTCGTCACAGCGAACGG
ACGTTGCCAACGCCTTCGCTGTGCGCCAGCTGCGGCGCTCCGAGCTCTAC
TTTGCGCGCTGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:59284..61245-

>Ggra11119.t1 ID=Ggra11119.t1|Name=Ggra11119.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000110_pilon:59284..61245- (Gracilaria gracilis GNS1m male)
ATGGCGCCCTCGCAGCCGCCGCCGCCGCCGCAGCCGCAGCCGCAGCCGCC
GCCGCTGCCAAGCGGCATGACGGCGCCGCGGCTGCACAACTACCTGCGCC
ACGCGCTGGCGCAGCGTAGCGTGAACCGCCGCCTGCTCATCGTCGCGCAC
AACGGCATTGTGGCCGGCCAGATGCGCGTGTCGGACGCGCGTCTGCACGA
CGTGATGGCGCAGTGCTTTCGCCACATCGAGTACCCGGCCGCCGCCGACT
ACCACTCGATGCAAATGCTCGTCACTATAGCCGTTACCGTGCATGTGCCG
AAGATGGCGCAGCAGCTCACGGACGGTGTCGTCAGCGTTGAAGCGGGCTG
TCGATTTGGTACAAAGGATGATGTCACGGAAGAGGGGCCTATATACCAAA
AGGCACGGAACAGGGCTGCAAGGTTGGCGCTTTCGCAGCTGCATGACATG
AGCACAAAGATAGAAAAAGCCTGTTTTGAACAGTTGAGAGTGGCGTTCGA
GAAGGCCAAGACAATGATCCTCAGTGAGGCAAAAGGCGCCTTGTATGGAG
CGTCTGTTTCGCTCTACGGCTCGGTGCCCACCGGCTTGATACTCGGAGAG
TCTGATATCGACGTGTCGGTAACAGTTCCGGGCCTGTTCGAGCCATACAA
GGACAGCGACCCGCATCGAATCAAGCGCAAAACTATTGACGTGCTCAAGT
TTCTGGCGGGGCACATGAAGCAGGAGAAGATGGAAAACGTGTTTGTGGTG
ACACAGGCACGAGTGCCGGTGTTGCGATACATTGATAGAGAAACTCAGGT
GAACGTGGACGTGACGTTAAACAACGACCGTAGTTTACTTGTTTCGAGAC
TGATTCGGAGGCATACACAAAAAGATGCGCGCGTGTGGCAACTGTGCATG
CTTGTCAAATACTGGGCCAAACAACGCAAATTATGCGGCGTTGCACAGGG
CCACATTAACTCCATGGGCTGGGTGATCATGGTGATCTTCTTCCTGCAGC
ACCTGGTTCATCCACGCATCGCGGGTTTGTACCGTCCGAAGAGGACGCGA
TGCAACTTCAAAGCGGTGGTGGAGGAACCGTGGCGCGACAGCAGAAGCAG
CGGGCTTGAAAATGAGCAGCACACGCACATGTTGCTGATGGAGTTTTTCC
GCGTGTACGGCACGGAGTTTGACTTTGCAACGGAGGCAATCTCAATGACG
CTGCCGTACCGGGAGCGCACCAAGTACATATCAAAGGGAGCGATGGACAG
GCCGCTGTTCATCGAACAGCCGCTGATGGAGGGAAAGAACGTAGTGGACT
ACGTCTCCAGGCAGACGCTGGAACTGGTTCGCGAGCAAATGAGCGACACC
TATCGCATGCTGTCGTCACAGCGAACGGACGTTGCCAACGCCTTCGCTGT
GCGCCAGCTGCGGCGCTCCGAGCTCTACTTTGCGCGCTGA
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