Ggra11118.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11118.t1
Unique NameGgra11118.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:58319..58914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES66985
PFAMsThymidylate_kin
Max annot lvl35493|Streptophyta
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050145,GO:0055086,GO:0061458,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue6.23e-60
EggNOG OGsCOG0125@1|root,KOG3327@2759|Eukaryota,37JUX@33090|Viridiplantae,3G8A8@35493|Streptophyta,4JDSG@91835|fabids
EC2.7.4.9
DescriptionThymidylate
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11118Ggra11118Gracilaria gracilis GNS1m malegenetig00000110_pilon 58319..58914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11118.t1Ggra11118.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 58319..58914 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11118.t1.stop1Ggra11118.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 58319..58321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11118.t1.CDS1Ggra11118.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 58319..58359 -
Ggra11118.t1.CDS2Ggra11118.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000110_pilon 58416..58914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11118.t1.exon1Ggra11118.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 58319..58359 -
Ggra11118.t1.exon2Ggra11118.t1.exon2Gracilaria gracilis GNS1m maleexontig00000110_pilon 58416..58914 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11118.t1.intron1Ggra11118.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000110_pilon 58360..58415 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11118.t1.start1Ggra11118.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 58912..58914 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11118.t1 ID=Ggra11118.t1|Name=Ggra11118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MRGALIVFEGADRTGKTTQTRNLANALQKAGIAIAPASPWRFPDRTTAIG
KMINAYLTNTVDVDKHAAHLLFSANRWEKVSLIRNALQSGQTVILDRYAY
SGVAYSRANGLCSHWCKSPDQGLPAPDVVLFLQLSPQAAAKRAHYGDERY
ENEQMQQRVAQAFEELHNSGQGHAAHRQG*
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spliced messenger RNA

>Ggra11118.t1 ID=Ggra11118.t1|Name=Ggra11118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000110_pilon:58319..58914- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGCGCTCTCATCGTGTTCGAAGGCGCCGACCGCACAGGAAAGAC
CACGCAGACGCGCAATCTGGCAAATGCGCTGCAGAAAGCAGGCATTGCCA
TCGCGCCCGCCTCCCCATGGCGCTTCCCGGATCGCACCACTGCAATCGGC
AAAATGATAAACGCTTACCTCACCAACACCGTCGACGTCGACAAGCACGC
CGCTCACCTGTTGTTTTCCGCAAATCGCTGGGAGAAAGTCTCGCTCATTC
GCAACGCCTTGCAGAGCGGTCAAACCGTCATACTAGACCGATACGCCTAC
TCCGGCGTCGCGTACTCGCGCGCAAACGGCCTGTGTTCGCACTGGTGCAA
GTCGCCTGATCAGGGCTTACCGGCCCCTGATGTCGTGCTGTTTCTGCAGC
TCAGCCCGCAGGCCGCCGCAAAACGCGCCCATTATGGCGACGAAAGGTAT
GAAAATGAGCAAATGCAGCAACGAGTCGCACAAGCATTCGAAGAATTACA
CAATTCTGGACAAGGCCATGCCGCTCATCGTCAAGGCTAG
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protein sequence of Ggra11118.t1

>Ggra11118.t1 ID=Ggra11118.t1|Name=Ggra11118.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MRGALIVFEGADRTGKTTQTRNLANALQKAGIAIAPASPWRFPDRTTAIG
KMINAYLTNTVDVDKHAAHLLFSANRWEKVSLIRNALQSGQTVILDRYAY
SGVAYSRANGLCSHWCKSPDQGLPAPDVVLFLQLSPQAAAKRAHYGDERY
ENEQMQQRVAQAFEELHNSGQGHAAHRQG*
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mRNA from alignment at tig00000110_pilon:58319..58914-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11118.t1 ID=Ggra11118.t1|Name=Ggra11118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp|location=Sequence derived from alignment at tig00000110_pilon:58319..58914- (Gracilaria gracilis GNS1m male)
ATGAGAGGCGCTCTCATCGTGTTCGAAGGCGCCGACCGCACAGGAAAGAC
CACGCAGACGCGCAATCTGGCAAATGCGCTGCAGAAAGCAGGCATTGCCA
TCGCGCCCGCCTCCCCATGGCGCTTCCCGGATCGCACCACTGCAATCGGC
AAAATGATAAACGCTTACCTCACCAACACCGTCGACGTCGACAAGCACGC
CGCTCACCTGTTGTTTTCCGCAAATCGCTGGGAGAAAGTCTCGCTCATTC
GCAACGCCTTGCAGAGCGGTCAAACCGTCATACTAGACCGATACGCCTAC
TCCGGCGTCGCGTACTCGCGCGCAAACGGCCTGTGTTCGCACTGGTGCAA
GTCGCCTGATCAGGGCTTACCGGCCCCTGATGTCGTGCTGTTTCTGCAGC
TCAGCCCGCAGGCCGCCGCAAAACGCGCCCATTATGGCGACGAAAGGTAT
GAAAATGAGCAAATGCAGCAACGAGTCGCACAAGCATTCGAAGAATTACG
TACCGAACAATGGCTTGTCATTGACGCTGACGGCGACGAACAAACCGTGT
TGCAGACAATTCTGGACAAGGCCATGCCGCTCATCGTCAAGGCTAG
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Coding sequence (CDS) from alignment at tig00000110_pilon:58319..58914-

>Ggra11118.t1 ID=Ggra11118.t1|Name=Ggra11118.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000110_pilon:58319..58914- (Gracilaria gracilis GNS1m male)
ATGAGAGGCGCTCTCATCGTGTTCGAAGGCGCCGACCGCACAGGAAAGAC
CACGCAGACGCGCAATCTGGCAAATGCGCTGCAGAAAGCAGGCATTGCCA
TCGCGCCCGCCTCCCCATGGCGCTTCCCGGATCGCACCACTGCAATCGGC
AAAATGATAAACGCTTACCTCACCAACACCGTCGACGTCGACAAGCACGC
CGCTCACCTGTTGTTTTCCGCAAATCGCTGGGAGAAAGTCTCGCTCATTC
GCAACGCCTTGCAGAGCGGTCAAACCGTCATACTAGACCGATACGCCTAC
TCCGGCGTCGCGTACTCGCGCGCAAACGGCCTGTGTTCGCACTGGTGCAA
GTCGCCTGATCAGGGCTTACCGGCCCCTGATGTCGTGCTGTTTCTGCAGC
TCAGCCCGCAGGCCGCCGCAAAACGCGCCCATTATGGCGACGAAAGGTAT
GAAAATGAGCAAATGCAGCAACGAGTCGCACAAGCATTCGAAGAATTACA
CAATTCTGGACAAGGCCATGCCGCTCATCGTCAAGGCTAG
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