Ggra11116.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11116.t1
Unique NameGgra11116.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:55816..56826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11116Ggra11116Gracilaria gracilis GNS1m malegenetig00000110_pilon 55816..56826 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11116.t1.stop1Ggra11116.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 55816..55818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11116.t1.CDS1Ggra11116.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 55816..56826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11116.t1.exon1Ggra11116.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 55816..56826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11116.t1.start1Ggra11116.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 56824..56826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11116.t1Ggra11116.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 55816..56826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11116.t1 ID=Ggra11116.t1|Name=Ggra11116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MVFRWLFSSSSSSATPSAHPPPDESAVPDEHVLRPGDSTPAAMEDLSRPL
RVSLNAIAPALVEARPELKLSEYDMSRGQYAINVLALTHNAVRVEMADMW
GDIIPGLEKRSQPNAPLPLTQQDSDDLRKWWSGFARFALTASLVDDMVTK
KAFSDVYVGFDKDTKQIAALFHKVQEKNNVYMEMAFKKMAKAVDSFEHDV
SENGCAQLVKSWQMLATMIGDVFTESERLVESIDRWVRNPFEYKDLEKQA
AKIFTSKKRWGDDDAKRGEMVIMLCRWLTEEELMREWMFRNLTKKELKCI
DKWMNGYQDGRLIIIDRLYQKKAANDSSDMELDAIP*
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spliced messenger RNA

>Ggra11116.t1 ID=Ggra11116.t1|Name=Ggra11116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000110_pilon:55816..56826- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTCCGCTGGTTGTTTTCGTCGTCGTCTTCGTCGGCGACGCCGTC
CGCGCACCCTCCCCCGGACGAATCCGCCGTGCCGGACGAGCATGTGCTGC
GGCCCGGAGATTCCACGCCGGCCGCCATGGAGGATCTTTCGCGCCCGCTG
CGCGTGTCGCTCAACGCCATTGCGCCCGCGCTCGTCGAGGCGAGACCAGA
GCTCAAGCTCAGCGAGTATGACATGTCGCGCGGTCAGTATGCCATCAACG
TGCTGGCCCTCACTCATAATGCCGTGCGCGTGGAGATGGCCGACATGTGG
GGTGACATTATCCCCGGCTTGGAGAAGCGCTCGCAGCCGAATGCGCCGCT
GCCACTCACGCAGCAGGACTCGGATGACCTTAGAAAGTGGTGGTCTGGCT
TTGCTCGCTTCGCGCTCACCGCCAGTTTGGTCGATGACATGGTCACCAAG
AAGGCCTTTTCGGACGTGTACGTCGGCTTTGACAAGGACACCAAGCAGAT
TGCCGCCTTGTTCCACAAGGTGCAGGAGAAGAACAACGTCTACATGGAGA
TGGCTTTCAAGAAGATGGCCAAGGCTGTGGATAGCTTTGAGCATGATGTG
TCAGAAAACGGCTGTGCGCAGCTCGTCAAGTCATGGCAGATGCTCGCTAC
TATGATTGGCGACGTCTTCACTGAGTCTGAACGTCTGGTCGAATCCATTG
ACAGATGGGTTAGAAACCCGTTCGAGTACAAGGACCTGGAGAAGCAGGCC
GCCAAGATCTTCACCAGCAAGAAACGTTGGGGCGATGACGATGCCAAACG
AGGCGAGATGGTTATTATGTTGTGTCGATGGCTTACGGAGGAAGAACTCA
TGAGAGAATGGATGTTCAGAAACCTTACCAAGAAGGAACTTAAATGTATT
GACAAGTGGATGAATGGGTACCAAGATGGAAGGCTTATCATTATCGACCG
CCTGTATCAAAAGAAAGCTGCAAACGATTCTAGTGATATGGAGCTCGATG
CCATTCCTTGA
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protein sequence of Ggra11116.t1

>Ggra11116.t1 ID=Ggra11116.t1|Name=Ggra11116.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MVFRWLFSSSSSSATPSAHPPPDESAVPDEHVLRPGDSTPAAMEDLSRPL
RVSLNAIAPALVEARPELKLSEYDMSRGQYAINVLALTHNAVRVEMADMW
GDIIPGLEKRSQPNAPLPLTQQDSDDLRKWWSGFARFALTASLVDDMVTK
KAFSDVYVGFDKDTKQIAALFHKVQEKNNVYMEMAFKKMAKAVDSFEHDV
SENGCAQLVKSWQMLATMIGDVFTESERLVESIDRWVRNPFEYKDLEKQA
AKIFTSKKRWGDDDAKRGEMVIMLCRWLTEEELMREWMFRNLTKKELKCI
DKWMNGYQDGRLIIIDRLYQKKAANDSSDMELDAIP*
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mRNA from alignment at tig00000110_pilon:55816..56826-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11116.t1 ID=Ggra11116.t1|Name=Ggra11116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000110_pilon:55816..56826- (Gracilaria gracilis GNS1m male)
ATGGTCTTCCGCTGGTTGTTTTCGTCGTCGTCTTCGTCGGCGACGCCGTC
CGCGCACCCTCCCCCGGACGAATCCGCCGTGCCGGACGAGCATGTGCTGC
GGCCCGGAGATTCCACGCCGGCCGCCATGGAGGATCTTTCGCGCCCGCTG
CGCGTGTCGCTCAACGCCATTGCGCCCGCGCTCGTCGAGGCGAGACCAGA
GCTCAAGCTCAGCGAGTATGACATGTCGCGCGGTCAGTATGCCATCAACG
TGCTGGCCCTCACTCATAATGCCGTGCGCGTGGAGATGGCCGACATGTGG
GGTGACATTATCCCCGGCTTGGAGAAGCGCTCGCAGCCGAATGCGCCGCT
GCCACTCACGCAGCAGGACTCGGATGACCTTAGAAAGTGGTGGTCTGGCT
TTGCTCGCTTCGCGCTCACCGCCAGTTTGGTCGATGACATGGTCACCAAG
AAGGCCTTTTCGGACGTGTACGTCGGCTTTGACAAGGACACCAAGCAGAT
TGCCGCCTTGTTCCACAAGGTGCAGGAGAAGAACAACGTCTACATGGAGA
TGGCTTTCAAGAAGATGGCCAAGGCTGTGGATAGCTTTGAGCATGATGTG
TCAGAAAACGGCTGTGCGCAGCTCGTCAAGTCATGGCAGATGCTCGCTAC
TATGATTGGCGACGTCTTCACTGAGTCTGAACGTCTGGTCGAATCCATTG
ACAGATGGGTTAGAAACCCGTTCGAGTACAAGGACCTGGAGAAGCAGGCC
GCCAAGATCTTCACCAGCAAGAAACGTTGGGGCGATGACGATGCCAAACG
AGGCGAGATGGTTATTATGTTGTGTCGATGGCTTACGGAGGAAGAACTCA
TGAGAGAATGGATGTTCAGAAACCTTACCAAGAAGGAACTTAAATGTATT
GACAAGTGGATGAATGGGTACCAAGATGGAAGGCTTATCATTATCGACCG
CCTGTATCAAAAGAAAGCTGCAAACGATTCTAGTGATATGGAGCTCGATG
CCATTCCTTGA
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Coding sequence (CDS) from alignment at tig00000110_pilon:55816..56826-

>Ggra11116.t1 ID=Ggra11116.t1|Name=Ggra11116.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000110_pilon:55816..56826- (Gracilaria gracilis GNS1m male)
ATGGTCTTCCGCTGGTTGTTTTCGTCGTCGTCTTCGTCGGCGACGCCGTC
CGCGCACCCTCCCCCGGACGAATCCGCCGTGCCGGACGAGCATGTGCTGC
GGCCCGGAGATTCCACGCCGGCCGCCATGGAGGATCTTTCGCGCCCGCTG
CGCGTGTCGCTCAACGCCATTGCGCCCGCGCTCGTCGAGGCGAGACCAGA
GCTCAAGCTCAGCGAGTATGACATGTCGCGCGGTCAGTATGCCATCAACG
TGCTGGCCCTCACTCATAATGCCGTGCGCGTGGAGATGGCCGACATGTGG
GGTGACATTATCCCCGGCTTGGAGAAGCGCTCGCAGCCGAATGCGCCGCT
GCCACTCACGCAGCAGGACTCGGATGACCTTAGAAAGTGGTGGTCTGGCT
TTGCTCGCTTCGCGCTCACCGCCAGTTTGGTCGATGACATGGTCACCAAG
AAGGCCTTTTCGGACGTGTACGTCGGCTTTGACAAGGACACCAAGCAGAT
TGCCGCCTTGTTCCACAAGGTGCAGGAGAAGAACAACGTCTACATGGAGA
TGGCTTTCAAGAAGATGGCCAAGGCTGTGGATAGCTTTGAGCATGATGTG
TCAGAAAACGGCTGTGCGCAGCTCGTCAAGTCATGGCAGATGCTCGCTAC
TATGATTGGCGACGTCTTCACTGAGTCTGAACGTCTGGTCGAATCCATTG
ACAGATGGGTTAGAAACCCGTTCGAGTACAAGGACCTGGAGAAGCAGGCC
GCCAAGATCTTCACCAGCAAGAAACGTTGGGGCGATGACGATGCCAAACG
AGGCGAGATGGTTATTATGTTGTGTCGATGGCTTACGGAGGAAGAACTCA
TGAGAGAATGGATGTTCAGAAACCTTACCAAGAAGGAACTTAAATGTATT
GACAAGTGGATGAATGGGTACCAAGATGGAAGGCTTATCATTATCGACCG
CCTGTATCAAAAGAAAGCTGCAAACGATTCTAGTGATATGGAGCTCGATG
CCATTCCTTGA
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