Ggra11113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11113.t1
Unique NameGgra11113.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000472_piloncontigtig00000472_pilon:6587..7759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11113Ggra11113Gracilaria gracilis GNS1m malegenetig00000472_pilon 6587..7759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11113.t1Ggra11113.t1Gracilaria gracilis GNS1m malepolypeptidetig00000472_pilon 6587..7759 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11113.t1.stop1Ggra11113.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000472_pilon 6587..6589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11113.t1.CDS1Ggra11113.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000472_pilon 6587..6897 -
Ggra11113.t1.CDS2Ggra11113.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000472_pilon 7385..7649 -
Ggra11113.t1.CDS3Ggra11113.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000472_pilon 7727..7759 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11113.t1.exon1Ggra11113.t1.exon1Gracilaria gracilis GNS1m maleexontig00000472_pilon 6587..6897 -
Ggra11113.t1.exon2Ggra11113.t1.exon2Gracilaria gracilis GNS1m maleexontig00000472_pilon 7385..7649 -
Ggra11113.t1.exon3Ggra11113.t1.exon3Gracilaria gracilis GNS1m maleexontig00000472_pilon 7727..7759 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11113.t1.intron1Ggra11113.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000472_pilon 6898..7384 -
Ggra11113.t1.intron2Ggra11113.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000472_pilon 7650..7726 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11113.t1.start1Ggra11113.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000472_pilon 7757..7759 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11113.t1 ID=Ggra11113.t1|Name=Ggra11113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MKGIMTNVYLFHYGGTGQEEGKRESRQEVSVRDLRVERIVPFDPVLEGRE
QLEHDIYGREEKRDQAQNVSELVQATQLPGVKHQRYVTPRRSPSLGTGPE
LGAEVRALSGVSSLSLSFLSALAEAEQADSACAPVAALAVCRDVPAGKLS
TADETAEGEECSCDAAAPTGAGACGSARKEEDEGEAEVTVMVVATDTDID
SG*
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spliced messenger RNA

>Ggra11113.t1 ID=Ggra11113.t1|Name=Ggra11113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000472_pilon:6587..7759- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGAATAATGACAAACGTTTATCTCTTTCACTACGGTGGCACTGG
ACAGGAGGAGGGTAAACGCGAATCGCGACAGGAGGTCAGTGTCCGTGACT
TGCGCGTCGAACGGATCGTCCCGTTTGACCCAGTGCTGGAAGGACGCGAA
CAATTGGAACATGATATTTATGGGAGAGAGGAAAAACGTGACCAGGCGCA
GAACGTTTCTGAACTGGTGCAAGCGACGCAGCTTCCGGGCGTGAAACACC
AAAGATATGTCACTCCTCGCCGCAGCCCGTCGCTTGGCACCGGACCGGAG
CTGGGAGCAGAAGTCCGTGCTTTGTCTGGGGTGTCGTCTTTGTCGCTTTC
CTTTCTGTCGGCACTGGCAGAGGCAGAACAGGCCGATTCTGCTTGCGCGC
CTGTGGCCGCGCTCGCTGTCTGCCGAGATGTGCCAGCAGGCAAGCTCTCC
ACGGCTGACGAAACTGCCGAGGGTGAGGAATGCTCGTGCGATGCAGCAGC
CCCGACGGGTGCTGGTGCTTGCGGCTCTGCGCGCAAGGAGGAAGACGAGG
GCGAGGCGGAGGTCACTGTGATGGTTGTGGCAACAGATACGGACATAGAC
TCGGGCTGA
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protein sequence of Ggra11113.t1

>Ggra11113.t1 ID=Ggra11113.t1|Name=Ggra11113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MKGIMTNVYLFHYGGTGQEEGKRESRQEVSVRDLRVERIVPFDPVLEGRE
QLEHDIYGREEKRDQAQNVSELVQATQLPGVKHQRYVTPRRSPSLGTGPE
LGAEVRALSGVSSLSLSFLSALAEAEQADSACAPVAALAVCRDVPAGKLS
TADETAEGEECSCDAAAPTGAGACGSARKEEDEGEAEVTVMVVATDTDID
SG*
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mRNA from alignment at tig00000472_pilon:6587..7759-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11113.t1 ID=Ggra11113.t1|Name=Ggra11113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000472_pilon:6587..7759- (Gracilaria gracilis GNS1m male)
ATGAAAGGAATAATGACAAACGTTTATCTCTTTGTGCGACCTCGTGTGCT
GCGTTTGCGCTTTGCCGAACCTCTGCGCCCACACAGCGCTGTGTACTGAA
ACCAAAACAGCACTACGGTGGCACTGGACAGGAGGAGGGTAAACGCGAAT
CGCGACAGGAGGTCAGTGTCCGTGACTTGCGCGTCGAACGGATCGTCCCG
TTTGACCCAGTGCTGGAAGGACGCGAACAATTGGAACATGATATTTATGG
GAGAGAGGAAAAACGTGACCAGGCGCAGAACGTTTCTGAACTGGTGCAAG
CGACGCAGCTTCCGGGCGTGAAACACCAAAGATATGTCACTCCTCGCCGC
AGCCCGTCGCTTGGCACCGGACCGGGTACTCGAGGCGCGCGCAGCTCGAC
CTGTGTCCTCCAGCGAAGACGAGTGGGCAGCAGCGGATGAAGATAGCCGA
GGAGCCTTCTTGTGCAGCAGTACCCTCAGCAGTCCCTGCTTGGGAGTGGC
GGAAGGCGACGCTGAGCCATCGTACACACTGCCGCTGCCACGCGGCAGAA
AGAGGGAGGAGTGGCGCGGGCGAGAGGGGGAGCGGGAAGGTGATCGCGAT
GTCGAGTGAGTGCCTGTGCGTTTGTGCTTCACGACAATACGAAGGCTTCT
GTTCTTATAGCTGTCAGGGCGCGGGCTGCTCGGGGCAGAGGAGCTGGGTG
AGGCCCTCTGGTGTCGCAGCTCGCGCGTGTCTGTTCGTGCGTTCACCCCA
TTGCTCGCCAACGCACGATAACAACTGCTCGGAGGGCTAGCACTCCCTAA
CTTCGGCTGCAGGTCCACACTCCCAGCCGGCTTCGCAAGCATTGCTTTCT
TCTTCTCCTCAGAGCTGGGAGCAGAAGTCCGTGCTTTGTCTGGGGTGTCG
TCTTTGTCGCTTTCCTTTCTGTCGGCACTGGCAGAGGCAGAACAGGCCGA
TTCTGCTTGCGCGCCTGTGGCCGCGCTCGCTGTCTGCCGAGATGTGCCAG
CAGGCAAGCTCTCCACGGCTGACGAAACTGCCGAGGGTGAGGAATGCTCG
TGCGATGCAGCAGCCCCGACGGGTGCTGGTGCTTGCGGCTCTGCGCGCAA
GGAGGAAGACGAGGGCGAGGCGGAGGTCACTGTGATGGTTGTGGCAACAG
ATACGGACATAGACTCGGGCTGA
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Coding sequence (CDS) from alignment at tig00000472_pilon:6587..7759-

>Ggra11113.t1 ID=Ggra11113.t1|Name=Ggra11113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000472_pilon:6587..7759- (Gracilaria gracilis GNS1m male)
ATGAAAGGAATAATGACAAACGTTTATCTCTTTCACTACGGTGGCACTGG
ACAGGAGGAGGGTAAACGCGAATCGCGACAGGAGGTCAGTGTCCGTGACT
TGCGCGTCGAACGGATCGTCCCGTTTGACCCAGTGCTGGAAGGACGCGAA
CAATTGGAACATGATATTTATGGGAGAGAGGAAAAACGTGACCAGGCGCA
GAACGTTTCTGAACTGGTGCAAGCGACGCAGCTTCCGGGCGTGAAACACC
AAAGATATGTCACTCCTCGCCGCAGCCCGTCGCTTGGCACCGGACCGGAG
CTGGGAGCAGAAGTCCGTGCTTTGTCTGGGGTGTCGTCTTTGTCGCTTTC
CTTTCTGTCGGCACTGGCAGAGGCAGAACAGGCCGATTCTGCTTGCGCGC
CTGTGGCCGCGCTCGCTGTCTGCCGAGATGTGCCAGCAGGCAAGCTCTCC
ACGGCTGACGAAACTGCCGAGGGTGAGGAATGCTCGTGCGATGCAGCAGC
CCCGACGGGTGCTGGTGCTTGCGGCTCTGCGCGCAAGGAGGAAGACGAGG
GCGAGGCGGAGGTCACTGTGATGGTTGTGGCAACAGATACGGACATAGAC
TCGGGCTGA
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