Ggra11097.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11097.t1
Unique NameGgra11097.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:124880..125353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps31446
PFAMsRibosomal_S21
Max annot lvl2836|Bacillariophyta
Evalue5.44e-11
EggNOG OGs2E8X3@1|root,2QZEU@2759|Eukaryota,2XHKA@2836|Bacillariophyta
DescriptionRibosomal protein S21
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11097Ggra11097Gracilaria gracilis GNS1m malegenetig00000207_pilon 124880..125353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11097.t1Ggra11097.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 124880..125353 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11097.t1.start1Ggra11097.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 124880..124882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11097.t1.CDS1Ggra11097.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 124880..125093 +
Ggra11097.t1.CDS2Ggra11097.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 125181..125353 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11097.t1.exon1Ggra11097.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 124880..125093 +
Ggra11097.t1.exon2Ggra11097.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 125181..125353 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11097.t1.intron1Ggra11097.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 125094..125180 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11097.t1.stop1Ggra11097.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 125351..125353 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11097.t1 ID=Ggra11097.t1|Name=Ggra11097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MQNRSAFVPAVAMPVAASPAATALCPTRPAPFFSSMAFGTPLPARIAPPP
HFSNIRMDVTVVVGDSEPIEGALRRFKKEVTKSGHLFELRRRRYFETNTE
KRIRKAANARRKARMSRNSARQSQRQNF*
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spliced messenger RNA

>Ggra11097.t1 ID=Ggra11097.t1|Name=Ggra11097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000207_pilon:124880..125353+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAATCGCAGCGCCTTCGTGCCCGCCGTGGCCATGCCTGTGGCCGC
CTCGCCAGCTGCCACAGCCCTGTGTCCGACGCGTCCGGCGCCGTTCTTCT
CCAGCATGGCGTTTGGTACCCCTCTTCCGGCTAGAATTGCGCCTCCGCCG
CACTTTTCTAACATCCGTATGGATGTGACAGTCGTCGTTGGCGACAGCGA
ACCGATCGAGGGAGCCTTGCGTCGATTCAAGAAAGAAGTCACAAAGAGCG
GTCATCTATTCGAGCTTAGGAGAAGACGATATTTTGAGACCAATACCGAA
AAGCGCATTCGCAAGGCGGCTAATGCCAGGCGCAAGGCTAGGATGTCCAG
AAACTCTGCCCGTCAAAGCCAACGCCAGAATTTCTAG
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protein sequence of Ggra11097.t1

>Ggra11097.t1 ID=Ggra11097.t1|Name=Ggra11097.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MQNRSAFVPAVAMPVAASPAATALCPTRPAPFFSSMAFGTPLPARIAPPP
HFSNIRMDVTVVVGDSEPIEGALRRFKKEVTKSGHLFELRRRRYFETNTE
KRIRKAANARRKARMSRNSARQSQRQNF*
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mRNA from alignment at tig00000207_pilon:124880..125353+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11097.t1 ID=Ggra11097.t1|Name=Ggra11097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000207_pilon:124880..125353+ (Gracilaria gracilis GNS1m male)
ATGCAGAATCGCAGCGCCTTCGTGCCCGCCGTGGCCATGCCTGTGGCCGC
CTCGCCAGCTGCCACAGCCCTGTGTCCGACGCGTCCGGCGCCGTTCTTCT
CCAGCATGGCGTTTGGTACCCCTCTTCCGGCTAGAATTGCGCCTCCGCCG
CACTTTTCTAACATCCGTATGGATGTGACAGTCGTCGTTGGCGACAGCGA
ACCGATCGAGGGAGGTAAGCGACAGTCTCGCACTCAACCATCGCCCATAA
TCTTTATTCCTTGTGCTAACATTTCGTGCGACACCACTCGTTGCATCCCA
GCCTTGCGTCGATTCAAGAAAGAAGTCACAAAGAGCGGTCATCTATTCGA
GCTTAGGAGAAGACGATATTTTGAGACCAATACCGAAAAGCGCATTCGCA
AGGCGGCTAATGCCAGGCGCAAGGCTAGGATGTCCAGAAACTCTGCCCGT
CAAAGCCAACGCCAGAATTTCTAG
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Coding sequence (CDS) from alignment at tig00000207_pilon:124880..125353+

>Ggra11097.t1 ID=Ggra11097.t1|Name=Ggra11097.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000207_pilon:124880..125353+ (Gracilaria gracilis GNS1m male)
ATGCAGAATCGCAGCGCCTTCGTGCCCGCCGTGGCCATGCCTGTGGCCGC
CTCGCCAGCTGCCACAGCCCTGTGTCCGACGCGTCCGGCGCCGTTCTTCT
CCAGCATGGCGTTTGGTACCCCTCTTCCGGCTAGAATTGCGCCTCCGCCG
CACTTTTCTAACATCCGTATGGATGTGACAGTCGTCGTTGGCGACAGCGA
ACCGATCGAGGGAGCCTTGCGTCGATTCAAGAAAGAAGTCACAAAGAGCG
GTCATCTATTCGAGCTTAGGAGAAGACGATATTTTGAGACCAATACCGAA
AAGCGCATTCGCAAGGCGGCTAATGCCAGGCGCAAGGCTAGGATGTCCAG
AAACTCTGCCCGTCAAAGCCAACGCCAGAATTTCTAG
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