Ggra11095.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11095.t1
Unique NameGgra11095.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:121687..122754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S6_175V6.1
PFAMsTPT
Max annot lvl35493|Streptophyta
KEGG koko:K15285
GOsGO:0003674,GO:0005215,GO:0005338,GO:0005457,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0008514,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015783,GO:0015786,GO:0015931,GO:0015932,GO:0022857,GO:0034220,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0072334,GO:0090480,GO:0090481,GO:0098656,GO:1901264,GO:1901505
Evalue6.06e-69
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota,37M9G@33090|Viridiplantae,3GBCY@35493|Streptophyta
DescriptionTransporter
COG categoryEG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11095Ggra11095Gracilaria gracilis GNS1m malegenetig00000207_pilon 121687..122754 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11095.t1.start1Ggra11095.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 121687..121689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11095.t1.CDS1Ggra11095.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 121687..122754 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11095.t1.exon1Ggra11095.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 121687..122754 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11095.t1.stop1Ggra11095.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 122752..122754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11095.t1Ggra11095.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 121687..122754 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11095.t1 ID=Ggra11095.t1|Name=Ggra11095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MKVISLAAEKLEDSPSKSDASITPPPPGKPPHVVLFYIFCWFMANGTTVL
FNKYIFKTMNFTNPLSLTLIHMVTQSILAHLTIDYLKSVDKVRVDPVDYY
SKLLVIAVVFCTNICLGNISLRFVPVSFMQTIKSLTPVCTALLQYLVFRS
RLRTSALMALIPISGGVALASVTELEFHLGGFIAALTACFLTGLKFVLSS
QMLAGRYKLDSINLLYYMAPPSAALLLPLVLLLEKDGVMLWVLSPERTTR
DFLYLLFSGVVSYILNVTLFIVLKATSSVTVTVAGNIKTVLVIGISIIIF
QNAVTWVNLMGCMIAISGCCWYGLIKDKWATMGTFSIGKSPATYQPVEKS
DKLPQ*
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spliced messenger RNA

>Ggra11095.t1 ID=Ggra11095.t1|Name=Ggra11095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000207_pilon:121687..122754+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTTATATCGCTAGCAGCTGAGAAGCTGGAGGATTCCCCTTCCAA
GTCCGATGCCAGTATCACTCCGCCGCCGCCTGGAAAACCGCCTCATGTCG
TTCTGTTCTACATTTTTTGCTGGTTTATGGCCAATGGTACCACCGTCTTG
TTCAACAAGTACATTTTCAAGACCATGAACTTCACCAACCCTTTGAGTCT
AACGCTTATTCATATGGTAACACAGAGCATACTGGCACATCTTACAATCG
ACTATCTCAAATCTGTCGACAAAGTCCGAGTCGATCCTGTTGATTACTAC
TCAAAGCTCCTCGTCATCGCCGTTGTTTTTTGCACTAACATCTGCCTCGG
TAACATTAGCTTGCGCTTTGTGCCCGTGTCTTTCATGCAGACAATCAAAT
CGCTCACCCCGGTCTGCACCGCTTTACTTCAATACCTCGTTTTTCGATCA
AGACTGCGTACATCTGCTCTCATGGCGCTAATTCCTATCAGTGGCGGTGT
CGCACTTGCCTCCGTAACCGAGCTTGAGTTCCATCTAGGTGGTTTCATTG
CTGCCCTTACAGCCTGCTTCCTCACTGGATTGAAGTTTGTCCTCAGCTCT
CAAATGCTTGCGGGTCGTTACAAACTGGATAGTATCAATCTTCTGTATTA
CATGGCTCCGCCTTCAGCTGCACTTTTGCTACCGCTTGTTCTTCTGCTCG
AGAAAGACGGAGTGATGTTGTGGGTTTTGAGCCCGGAAAGAACTACAAGA
GACTTTCTCTATCTGCTTTTCAGTGGCGTTGTTTCGTATATTTTGAATGT
CACTCTGTTCATTGTCCTCAAGGCTACGTCATCAGTTACGGTCACCGTCG
CCGGCAACATCAAGACAGTTCTCGTAATCGGCATAAGCATCATCATTTTC
CAAAATGCCGTCACCTGGGTCAATCTGATGGGTTGCATGATCGCTATCTC
TGGGTGTTGCTGGTATGGTCTCATCAAGGACAAGTGGGCTACAATGGGTA
CGTTTAGCATCGGTAAGAGTCCAGCTACTTACCAACCTGTTGAAAAGTCG
GACAAGCTTCCACAATAG
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protein sequence of Ggra11095.t1

>Ggra11095.t1 ID=Ggra11095.t1|Name=Ggra11095.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MKVISLAAEKLEDSPSKSDASITPPPPGKPPHVVLFYIFCWFMANGTTVL
FNKYIFKTMNFTNPLSLTLIHMVTQSILAHLTIDYLKSVDKVRVDPVDYY
SKLLVIAVVFCTNICLGNISLRFVPVSFMQTIKSLTPVCTALLQYLVFRS
RLRTSALMALIPISGGVALASVTELEFHLGGFIAALTACFLTGLKFVLSS
QMLAGRYKLDSINLLYYMAPPSAALLLPLVLLLEKDGVMLWVLSPERTTR
DFLYLLFSGVVSYILNVTLFIVLKATSSVTVTVAGNIKTVLVIGISIIIF
QNAVTWVNLMGCMIAISGCCWYGLIKDKWATMGTFSIGKSPATYQPVEKS
DKLPQ*
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mRNA from alignment at tig00000207_pilon:121687..122754+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11095.t1 ID=Ggra11095.t1|Name=Ggra11095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000207_pilon:121687..122754+ (Gracilaria gracilis GNS1m male)
ATGAAGGTTATATCGCTAGCAGCTGAGAAGCTGGAGGATTCCCCTTCCAA
GTCCGATGCCAGTATCACTCCGCCGCCGCCTGGAAAACCGCCTCATGTCG
TTCTGTTCTACATTTTTTGCTGGTTTATGGCCAATGGTACCACCGTCTTG
TTCAACAAGTACATTTTCAAGACCATGAACTTCACCAACCCTTTGAGTCT
AACGCTTATTCATATGGTAACACAGAGCATACTGGCACATCTTACAATCG
ACTATCTCAAATCTGTCGACAAAGTCCGAGTCGATCCTGTTGATTACTAC
TCAAAGCTCCTCGTCATCGCCGTTGTTTTTTGCACTAACATCTGCCTCGG
TAACATTAGCTTGCGCTTTGTGCCCGTGTCTTTCATGCAGACAATCAAAT
CGCTCACCCCGGTCTGCACCGCTTTACTTCAATACCTCGTTTTTCGATCA
AGACTGCGTACATCTGCTCTCATGGCGCTAATTCCTATCAGTGGCGGTGT
CGCACTTGCCTCCGTAACCGAGCTTGAGTTCCATCTAGGTGGTTTCATTG
CTGCCCTTACAGCCTGCTTCCTCACTGGATTGAAGTTTGTCCTCAGCTCT
CAAATGCTTGCGGGTCGTTACAAACTGGATAGTATCAATCTTCTGTATTA
CATGGCTCCGCCTTCAGCTGCACTTTTGCTACCGCTTGTTCTTCTGCTCG
AGAAAGACGGAGTGATGTTGTGGGTTTTGAGCCCGGAAAGAACTACAAGA
GACTTTCTCTATCTGCTTTTCAGTGGCGTTGTTTCGTATATTTTGAATGT
CACTCTGTTCATTGTCCTCAAGGCTACGTCATCAGTTACGGTCACCGTCG
CCGGCAACATCAAGACAGTTCTCGTAATCGGCATAAGCATCATCATTTTC
CAAAATGCCGTCACCTGGGTCAATCTGATGGGTTGCATGATCGCTATCTC
TGGGTGTTGCTGGTATGGTCTCATCAAGGACAAGTGGGCTACAATGGGTA
CGTTTAGCATCGGTAAGAGTCCAGCTACTTACCAACCTGTTGAAAAGTCG
GACAAGCTTCCACAATAG
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Coding sequence (CDS) from alignment at tig00000207_pilon:121687..122754+

>Ggra11095.t1 ID=Ggra11095.t1|Name=Ggra11095.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000207_pilon:121687..122754+ (Gracilaria gracilis GNS1m male)
ATGAAGGTTATATCGCTAGCAGCTGAGAAGCTGGAGGATTCCCCTTCCAA
GTCCGATGCCAGTATCACTCCGCCGCCGCCTGGAAAACCGCCTCATGTCG
TTCTGTTCTACATTTTTTGCTGGTTTATGGCCAATGGTACCACCGTCTTG
TTCAACAAGTACATTTTCAAGACCATGAACTTCACCAACCCTTTGAGTCT
AACGCTTATTCATATGGTAACACAGAGCATACTGGCACATCTTACAATCG
ACTATCTCAAATCTGTCGACAAAGTCCGAGTCGATCCTGTTGATTACTAC
TCAAAGCTCCTCGTCATCGCCGTTGTTTTTTGCACTAACATCTGCCTCGG
TAACATTAGCTTGCGCTTTGTGCCCGTGTCTTTCATGCAGACAATCAAAT
CGCTCACCCCGGTCTGCACCGCTTTACTTCAATACCTCGTTTTTCGATCA
AGACTGCGTACATCTGCTCTCATGGCGCTAATTCCTATCAGTGGCGGTGT
CGCACTTGCCTCCGTAACCGAGCTTGAGTTCCATCTAGGTGGTTTCATTG
CTGCCCTTACAGCCTGCTTCCTCACTGGATTGAAGTTTGTCCTCAGCTCT
CAAATGCTTGCGGGTCGTTACAAACTGGATAGTATCAATCTTCTGTATTA
CATGGCTCCGCCTTCAGCTGCACTTTTGCTACCGCTTGTTCTTCTGCTCG
AGAAAGACGGAGTGATGTTGTGGGTTTTGAGCCCGGAAAGAACTACAAGA
GACTTTCTCTATCTGCTTTTCAGTGGCGTTGTTTCGTATATTTTGAATGT
CACTCTGTTCATTGTCCTCAAGGCTACGTCATCAGTTACGGTCACCGTCG
CCGGCAACATCAAGACAGTTCTCGTAATCGGCATAAGCATCATCATTTTC
CAAAATGCCGTCACCTGGGTCAATCTGATGGGTTGCATGATCGCTATCTC
TGGGTGTTGCTGGTATGGTCTCATCAAGGACAAGTGGGCTACAATGGGTA
CGTTTAGCATCGGTAAGAGTCCAGCTACTTACCAACCTGTTGAAAAGTCG
GACAAGCTTCCACAATAG
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