Ggra11065.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11065.t1
Unique Name	Ggra11065.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	734

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:24368..26653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI47281
PFAMs	SET
Max annot lvl	4776\|Peronosporales
KEGG rclass	RC00003,RC00060,RC00181,RC00496
KEGG ko	ko:K11430
KEGG Reaction	R03875,R03938,R04866,R04867
KEGG Pathway	ko00310,ko05206,map00310,map05206
Evalue	1.33e-34
EggNOG OGs	COG2940@1\|root,KOG1079@2759\|Eukaryota,3QCKQ@4776\|Peronosporales
EC	2.1.1.43
Description	histone-lysine N-methyltransferase activity
COG category	K
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11065	Ggra11065	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 24368..26653 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11065.t1	Ggra11065.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 24368..26653 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11065.t1.start1	Ggra11065.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 24368..24370 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11065.t1.CDS1	Ggra11065.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 24368..24447 +
Ggra11065.t1.CDS2	Ggra11065.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 24532..26653 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11065.t1.exon1	Ggra11065.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 24368..24447 +
Ggra11065.t1.exon2	Ggra11065.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 24532..26653 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11065.t1.intron1	Ggra11065.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000207_pilon 24448..24531 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11065.t1.stop1	Ggra11065.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 26651..26653 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:24368..26653+
coding sequence from alignment at tig00000207_pilon:24368..26653+

mRNA sequence

>Ggra11065.t1 ID=Ggra11065.t1|Name=Ggra11065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=734bp
MQRRRPPRNTSLKSRKQLLSEIPDLVSDILYKHHEQCNAYATTVIEAAVA
EETAFQTLKRIKRDTYLDQHEWALSSRMESIRRKYSPEDDVVDPGLLALD
AIVEISARAKRQAHRTRGRRIGKFDHIKVSMPFVHTPPKYDAWIPVKCNY
WVGKELNLEPYMPFLGDQDQDCELAFEVFEDMAGGADKEIDLSDGEVTKE
GKFRMPKDDVERVDYYSLAQMRWREGSRKAILAVLHQFLKFDDTMWRVLA
IALGISIQDVSRIKAIAKVAQKRKREHGIRIERRRRQRQKLRAYNEAWDD
RAGSRHLEEDESKSNTSFVKNFCLICHMFACPQHDSSNLEPIVPIPDKRT
TEREKALKTNVAQPCSNDCFLSKQIQPIDVDLEWSMEEILSMRECVPIFG
LDPCSLALGVGSKTCRQVREKLHDPMEADVARQELAHSRRARRLDGKQTD
AMEKAKSDTVIVEPYDPNTIDQDFSPCYHKGSCTQETCSCVKKGMHCEAT
CGCKSGRFVEGGKTGGIIWDPSPTNKNGAAGRSCQNRHYGCGCVNGPCTD
SRCMCWEHNRACTPDFCDCDCVSLPNHTWLSKRKCGNIPANIAQHKRTFV
GKSDVHGFGLFAAERFEKGDLVGMYNGQMIDTRLADVIGFLYDAMERTYI
FNVTESLVIDGGLLGSKVKFVNHTKTRDDENCGSRLVRVRGDAYVGLYCK
RTVEAGEEFLFDYRFTGAVPLWAQDERGTKSRR*

spliced messenger RNA

>Ggra11065.t1 ID=Ggra11065.t1|Name=Ggra11065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000207_pilon:24368..26653+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGAAGGCGTCCACCAAGGAACACTAGTCTGAAATCTAGAAAGCA
GCTATTGAGCGAAATCCCGGATTTGGTTAGTGATATTCTGTACAAACATC
ACGAACAATGTAACGCGTATGCCACAACGGTAATCGAGGCAGCAGTAGCG
GAGGAGACCGCGTTCCAAACGCTCAAACGTATCAAGAGAGATACCTATTT
AGACCAACATGAATGGGCCCTTTCCTCCAGGATGGAGTCAATAAGGAGGA
AATACAGCCCTGAAGATGATGTTGTAGACCCTGGTCTCCTTGCTTTGGAT
GCCATCGTGGAAATATCGGCACGTGCTAAGAGACAAGCCCACAGGACACG
AGGACGGCGAATCGGTAAGTTTGACCACATCAAGGTATCAATGCCATTTG
TACACACACCTCCCAAATACGACGCGTGGATCCCGGTGAAGTGCAACTAT
TGGGTTGGAAAAGAACTGAACTTGGAACCGTACATGCCGTTTTTGGGCGA
TCAGGATCAAGATTGCGAGCTGGCGTTCGAGGTATTCGAGGATATGGCGG
GAGGTGCAGACAAGGAAATTGACTTGAGCGATGGGGAGGTAACGAAAGAA
GGCAAGTTTCGCATGCCTAAAGATGACGTGGAGCGCGTTGACTACTACTC
CTTGGCGCAGATGAGATGGCGGGAAGGTTCGCGTAAGGCTATCCTTGCAG
TTTTACATCAGTTTCTCAAGTTTGACGACACCATGTGGCGAGTGCTTGCT
ATTGCTCTTGGTATATCCATACAGGACGTGAGCAGAATCAAAGCAATAGC
CAAAGTGGCACAGAAGCGAAAACGAGAACACGGGATACGAATCGAACGTC
GTAGGCGACAAAGACAAAAACTGAGGGCATATAACGAGGCATGGGATGAT
CGCGCAGGCAGCAGGCATCTAGAAGAGGATGAATCAAAGAGCAATACCAG
TTTTGTTAAGAATTTCTGTCTGATCTGTCACATGTTTGCATGCCCTCAAC
ACGACTCATCCAATCTTGAACCAATCGTACCCATACCGGACAAGAGAACA
ACGGAGAGAGAAAAAGCGTTGAAGACAAACGTTGCGCAGCCATGTTCCAA
CGATTGCTTCCTGAGCAAACAAATACAACCAATTGACGTGGATTTGGAAT
GGAGTATGGAAGAAATTCTATCTATGCGAGAATGTGTTCCGATCTTCGGG
CTGGATCCGTGTTCACTAGCGTTGGGTGTGGGATCAAAAACATGCCGTCA
GGTGCGCGAAAAGCTACATGACCCAATGGAAGCCGATGTGGCGCGGCAAG
AACTGGCGCATTCACGTCGTGCACGCCGGTTAGATGGAAAACAGACGGAT
GCAATGGAGAAAGCCAAGTCAGACACAGTGATCGTGGAGCCATACGACCC
CAACACAATCGACCAAGACTTTTCGCCATGCTATCATAAAGGATCGTGCA
CTCAGGAAACGTGCTCGTGTGTGAAGAAGGGTATGCATTGCGAGGCGACA
TGCGGCTGTAAGAGCGGGCGATTCGTGGAAGGTGGCAAGACCGGCGGAAT
TATATGGGATCCTTCACCCACGAACAAAAACGGCGCTGCGGGACGGAGCT
GTCAGAATCGACACTATGGATGTGGGTGCGTGAATGGTCCGTGCACGGAC
TCTCGGTGCATGTGTTGGGAGCATAACAGGGCGTGTACGCCCGACTTTTG
TGACTGTGATTGCGTGTCGCTACCAAATCACACCTGGCTGTCCAAACGAA
AATGCGGCAACATCCCGGCCAACATCGCGCAGCACAAGCGCACTTTTGTA
GGCAAATCGGACGTTCACGGGTTCGGCTTATTCGCGGCAGAACGGTTTGA
AAAGGGCGATTTGGTGGGGATGTACAACGGGCAGATGATCGACACGCGGC
TAGCGGACGTGATCGGCTTCCTGTACGACGCGATGGAGCGCACGTACATC
TTCAACGTGACGGAGTCGCTGGTGATCGACGGCGGGCTGTTAGGCAGCAA
GGTGAAGTTCGTGAACCACACCAAGACCCGCGACGACGAGAACTGCGGCA
GCCGGCTGGTGCGCGTGCGCGGCGACGCGTACGTCGGGCTGTACTGCAAG
CGCACGGTGGAGGCGGGAGAGGAGTTTCTGTTTGACTATCGCTTCACCGG
CGCGGTGCCGCTGTGGGCGCAGGACGAGCGTGGCACCAAGTCGCGCCGAT
AG

protein sequence of Ggra11065.t1

>Ggra11065.t1 ID=Ggra11065.t1|Name=Ggra11065.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=734bp
MQRRRPPRNTSLKSRKQLLSEIPDLVSDILYKHHEQCNAYATTVIEAAVA
EETAFQTLKRIKRDTYLDQHEWALSSRMESIRRKYSPEDDVVDPGLLALD
AIVEISARAKRQAHRTRGRRIGKFDHIKVSMPFVHTPPKYDAWIPVKCNY
WVGKELNLEPYMPFLGDQDQDCELAFEVFEDMAGGADKEIDLSDGEVTKE
GKFRMPKDDVERVDYYSLAQMRWREGSRKAILAVLHQFLKFDDTMWRVLA
IALGISIQDVSRIKAIAKVAQKRKREHGIRIERRRRQRQKLRAYNEAWDD
RAGSRHLEEDESKSNTSFVKNFCLICHMFACPQHDSSNLEPIVPIPDKRT
TEREKALKTNVAQPCSNDCFLSKQIQPIDVDLEWSMEEILSMRECVPIFG
LDPCSLALGVGSKTCRQVREKLHDPMEADVARQELAHSRRARRLDGKQTD
AMEKAKSDTVIVEPYDPNTIDQDFSPCYHKGSCTQETCSCVKKGMHCEAT
CGCKSGRFVEGGKTGGIIWDPSPTNKNGAAGRSCQNRHYGCGCVNGPCTD
SRCMCWEHNRACTPDFCDCDCVSLPNHTWLSKRKCGNIPANIAQHKRTFV
GKSDVHGFGLFAAERFEKGDLVGMYNGQMIDTRLADVIGFLYDAMERTYI
FNVTESLVIDGGLLGSKVKFVNHTKTRDDENCGSRLVRVRGDAYVGLYCK
RTVEAGEEFLFDYRFTGAVPLWAQDERGTKSRR*

mRNA from alignment at tig00000207_pilon:24368..26653+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11065.t1 ID=Ggra11065.t1|Name=Ggra11065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00000207_pilon:24368..26653+ (Gracilaria gracilis GNS1m male)
ATGCAGCGAAGGCGTCCACCAAGGAACACTAGTCTGAAATCTAGAAAGCA
GCTATTGAGCGAAATCCCGGATTTGGTTAGGTAAGTAGGGTAAGCACTGG
AGTCGAAGCTCGGCAAATCTTGAACACTCCTTTTTCTAACCACCGGCTAA
TGTCCTATCCATAGTGATATTCTGTACAAACATCACGAACAATGTAACGC
GTATGCCACAACGGTAATCGAGGCAGCAGTAGCGGAGGAGACCGCGTTCC
AAACGCTCAAACGTATCAAGAGAGATACCTATTTAGACCAACATGAATGG
GCCCTTTCCTCCAGGATGGAGTCAATAAGGAGGAAATACAGCCCTGAAGA
TGATGTTGTAGACCCTGGTCTCCTTGCTTTGGATGCCATCGTGGAAATAT
CGGCACGTGCTAAGAGACAAGCCCACAGGACACGAGGACGGCGAATCGGT
AAGTTTGACCACATCAAGGTATCAATGCCATTTGTACACACACCTCCCAA
ATACGACGCGTGGATCCCGGTGAAGTGCAACTATTGGGTTGGAAAAGAAC
TGAACTTGGAACCGTACATGCCGTTTTTGGGCGATCAGGATCAAGATTGC
GAGCTGGCGTTCGAGGTATTCGAGGATATGGCGGGAGGTGCAGACAAGGA
AATTGACTTGAGCGATGGGGAGGTAACGAAAGAAGGCAAGTTTCGCATGC
CTAAAGATGACGTGGAGCGCGTTGACTACTACTCCTTGGCGCAGATGAGA
TGGCGGGAAGGTTCGCGTAAGGCTATCCTTGCAGTTTTACATCAGTTTCT
CAAGTTTGACGACACCATGTGGCGAGTGCTTGCTATTGCTCTTGGTATAT
CCATACAGGACGTGAGCAGAATCAAAGCAATAGCCAAAGTGGCACAGAAG
CGAAAACGAGAACACGGGATACGAATCGAACGTCGTAGGCGACAAAGACA
AAAACTGAGGGCATATAACGAGGCATGGGATGATCGCGCAGGCAGCAGGC
ATCTAGAAGAGGATGAATCAAAGAGCAATACCAGTTTTGTTAAGAATTTC
TGTCTGATCTGTCACATGTTTGCATGCCCTCAACACGACTCATCCAATCT
TGAACCAATCGTACCCATACCGGACAAGAGAACAACGGAGAGAGAAAAAG
CGTTGAAGACAAACGTTGCGCAGCCATGTTCCAACGATTGCTTCCTGAGC
AAACAAATACAACCAATTGACGTGGATTTGGAATGGAGTATGGAAGAAAT
TCTATCTATGCGAGAATGTGTTCCGATCTTCGGGCTGGATCCGTGTTCAC
TAGCGTTGGGTGTGGGATCAAAAACATGCCGTCAGGTGCGCGAAAAGCTA
CATGACCCAATGGAAGCCGATGTGGCGCGGCAAGAACTGGCGCATTCACG
TCGTGCACGCCGGTTAGATGGAAAACAGACGGATGCAATGGAGAAAGCCA
AGTCAGACACAGTGATCGTGGAGCCATACGACCCCAACACAATCGACCAA
GACTTTTCGCCATGCTATCATAAAGGATCGTGCACTCAGGAAACGTGCTC
GTGTGTGAAGAAGGGTATGCATTGCGAGGCGACATGCGGCTGTAAGAGCG
GGCGATTCGTGGAAGGTGGCAAGACCGGCGGAATTATATGGGATCCTTCA
CCCACGAACAAAAACGGCGCTGCGGGACGGAGCTGTCAGAATCGACACTA
TGGATGTGGGTGCGTGAATGGTCCGTGCACGGACTCTCGGTGCATGTGTT
GGGAGCATAACAGGGCGTGTACGCCCGACTTTTGTGACTGTGATTGCGTG
TCGCTACCAAATCACACCTGGCTGTCCAAACGAAAATGCGGCAACATCCC
GGCCAACATCGCGCAGCACAAGCGCACTTTTGTAGGCAAATCGGACGTTC
ACGGGTTCGGCTTATTCGCGGCAGAACGGTTTGAAAAGGGCGATTTGGTG
GGGATGTACAACGGGCAGATGATCGACACGCGGCTAGCGGACGTGATCGG
CTTCCTGTACGACGCGATGGAGCGCACGTACATCTTCAACGTGACGGAGT
CGCTGGTGATCGACGGCGGGCTGTTAGGCAGCAAGGTGAAGTTCGTGAAC
CACACCAAGACCCGCGACGACGAGAACTGCGGCAGCCGGCTGGTGCGCGT
GCGCGGCGACGCGTACGTCGGGCTGTACTGCAAGCGCACGGTGGAGGCGG
GAGAGGAGTTTCTGTTTGACTATCGCTTCACCGGCGCGGTGCCGCTGTGG
GCGCAGGACGAGCGTGGCACCAAGTCGCGCCGATAG

Coding sequence (CDS) from alignment at tig00000207_pilon:24368..26653+

>Ggra11065.t1 ID=Ggra11065.t1|Name=Ggra11065.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2202bp|location=Sequence derived from alignment at tig00000207_pilon:24368..26653+ (Gracilaria gracilis GNS1m male)
ATGCAGCGAAGGCGTCCACCAAGGAACACTAGTCTGAAATCTAGAAAGCA
GCTATTGAGCGAAATCCCGGATTTGGTTAGTGATATTCTGTACAAACATC
ACGAACAATGTAACGCGTATGCCACAACGGTAATCGAGGCAGCAGTAGCG
GAGGAGACCGCGTTCCAAACGCTCAAACGTATCAAGAGAGATACCTATTT
AGACCAACATGAATGGGCCCTTTCCTCCAGGATGGAGTCAATAAGGAGGA
AATACAGCCCTGAAGATGATGTTGTAGACCCTGGTCTCCTTGCTTTGGAT
GCCATCGTGGAAATATCGGCACGTGCTAAGAGACAAGCCCACAGGACACG
AGGACGGCGAATCGGTAAGTTTGACCACATCAAGGTATCAATGCCATTTG
TACACACACCTCCCAAATACGACGCGTGGATCCCGGTGAAGTGCAACTAT
TGGGTTGGAAAAGAACTGAACTTGGAACCGTACATGCCGTTTTTGGGCGA
TCAGGATCAAGATTGCGAGCTGGCGTTCGAGGTATTCGAGGATATGGCGG
GAGGTGCAGACAAGGAAATTGACTTGAGCGATGGGGAGGTAACGAAAGAA
GGCAAGTTTCGCATGCCTAAAGATGACGTGGAGCGCGTTGACTACTACTC
CTTGGCGCAGATGAGATGGCGGGAAGGTTCGCGTAAGGCTATCCTTGCAG
TTTTACATCAGTTTCTCAAGTTTGACGACACCATGTGGCGAGTGCTTGCT
ATTGCTCTTGGTATATCCATACAGGACGTGAGCAGAATCAAAGCAATAGC
CAAAGTGGCACAGAAGCGAAAACGAGAACACGGGATACGAATCGAACGTC
GTAGGCGACAAAGACAAAAACTGAGGGCATATAACGAGGCATGGGATGAT
CGCGCAGGCAGCAGGCATCTAGAAGAGGATGAATCAAAGAGCAATACCAG
TTTTGTTAAGAATTTCTGTCTGATCTGTCACATGTTTGCATGCCCTCAAC
ACGACTCATCCAATCTTGAACCAATCGTACCCATACCGGACAAGAGAACA
ACGGAGAGAGAAAAAGCGTTGAAGACAAACGTTGCGCAGCCATGTTCCAA
CGATTGCTTCCTGAGCAAACAAATACAACCAATTGACGTGGATTTGGAAT
GGAGTATGGAAGAAATTCTATCTATGCGAGAATGTGTTCCGATCTTCGGG
CTGGATCCGTGTTCACTAGCGTTGGGTGTGGGATCAAAAACATGCCGTCA
GGTGCGCGAAAAGCTACATGACCCAATGGAAGCCGATGTGGCGCGGCAAG
AACTGGCGCATTCACGTCGTGCACGCCGGTTAGATGGAAAACAGACGGAT
GCAATGGAGAAAGCCAAGTCAGACACAGTGATCGTGGAGCCATACGACCC
CAACACAATCGACCAAGACTTTTCGCCATGCTATCATAAAGGATCGTGCA
CTCAGGAAACGTGCTCGTGTGTGAAGAAGGGTATGCATTGCGAGGCGACA
TGCGGCTGTAAGAGCGGGCGATTCGTGGAAGGTGGCAAGACCGGCGGAAT
TATATGGGATCCTTCACCCACGAACAAAAACGGCGCTGCGGGACGGAGCT
GTCAGAATCGACACTATGGATGTGGGTGCGTGAATGGTCCGTGCACGGAC
TCTCGGTGCATGTGTTGGGAGCATAACAGGGCGTGTACGCCCGACTTTTG
TGACTGTGATTGCGTGTCGCTACCAAATCACACCTGGCTGTCCAAACGAA
AATGCGGCAACATCCCGGCCAACATCGCGCAGCACAAGCGCACTTTTGTA
GGCAAATCGGACGTTCACGGGTTCGGCTTATTCGCGGCAGAACGGTTTGA
AAAGGGCGATTTGGTGGGGATGTACAACGGGCAGATGATCGACACGCGGC
TAGCGGACGTGATCGGCTTCCTGTACGACGCGATGGAGCGCACGTACATC
TTCAACGTGACGGAGTCGCTGGTGATCGACGGCGGGCTGTTAGGCAGCAA
GGTGAAGTTCGTGAACCACACCAAGACCCGCGACGACGAGAACTGCGGCA
GCCGGCTGGTGCGCGTGCGCGGCGACGCGTACGTCGGGCTGTACTGCAAG
CGCACGGTGGAGGCGGGAGAGGAGTTTCTGTTTGACTATCGCTTCACCGG
CGCGGTGCCGCTGTGGGCGCAGGACGAGCGTGGCACCAAGTCGCGCCGAT
AG