Ggra11035.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11035.t1
Unique NameGgra11035.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:168321..169610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue3.34e-17
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11035Ggra11035Gracilaria gracilis GNS1m malegenetig00000894_pilon 168321..169610 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11035.t1.stop1Ggra11035.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 168321..168323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11035.t1.CDS1Ggra11035.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 168321..169610 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11035.t1.exon1Ggra11035.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 168321..169610 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11035.t1.start1Ggra11035.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 169608..169610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11035.t1Ggra11035.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 168321..169610 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11035.t1 ID=Ggra11035.t1|Name=Ggra11035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MCECFRDQFEKVCGTKYEILFLHASINNYYTAKDRPIHAIFQCVSPIDDK
SNKVVSPVSKEYKWMEIKEVDFLVEDSLSCWVYDMEEFSAHFTLTRPEHM
KCAEDGYRPWELPMWHINTTLEAKDALARLGYVVKGKFEQWQITHNSAVL
RVATSKGHVYLKASNRREGKITDLIAGFAPELVRKPILVNEEKGWMLMDD
YGTIVGRSSEAEYERFCIPIGQLHLESIRHLETLKEAGVPFQSAQSFIQR
TEKMLKDKGIGKIMGKCDAFQSCTHEGVADLQQYCEAVCELLRDLYENGK
CPLSLVHGDLPDNMIKGYDGSCILFDWGAARIDFPLCDLLAMEDNVSSDV
FEEYLSLWEAYASPSELRSLFGIVFIKVRLIWVLREYEEEIKLQPINRLE
DMTIDMLEDLLVDAKEEIGTRKSQVKNRD*
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spliced messenger RNA

>Ggra11035.t1 ID=Ggra11035.t1|Name=Ggra11035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000894_pilon:168321..169610- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAATGCTTCCGTGACCAGTTTGAAAAGGTGTGTGGAACAAAATA
TGAAATACTTTTCCTTCATGCGTCGATAAATAACTACTACACTGCTAAAG
ACAGGCCCATACATGCAATTTTTCAGTGTGTATCACCGATTGACGACAAG
TCCAACAAAGTAGTGTCACCGGTGTCTAAAGAGTACAAATGGATGGAGAT
TAAAGAAGTTGATTTCCTCGTGGAAGATTCTCTTTCTTGTTGGGTATACG
ATATGGAGGAATTCAGTGCTCATTTTACGTTAACGAGACCAGAACATATG
AAATGTGCAGAGGACGGGTATAGACCTTGGGAGCTACCGATGTGGCATAT
AAATACAACTCTTGAAGCAAAAGACGCACTCGCAAGGTTAGGATATGTTG
TGAAAGGCAAGTTTGAGCAGTGGCAAATCACCCACAACTCTGCTGTGTTA
CGTGTGGCAACAAGCAAGGGCCATGTGTATTTGAAGGCTAGCAACCGAAG
AGAAGGTAAAATAACGGATCTCATAGCGGGGTTTGCGCCTGAACTCGTTC
GAAAGCCGATATTGGTGAACGAAGAAAAGGGTTGGATGTTGATGGACGAC
TACGGAACTATTGTAGGTCGCAGTAGCGAGGCAGAATACGAAAGGTTTTG
TATTCCGATTGGACAGCTTCATCTTGAATCAATTCGACACCTTGAAACTC
TGAAGGAGGCTGGCGTTCCATTCCAGTCTGCTCAATCTTTTATACAGCGG
ACGGAGAAAATGCTGAAGGATAAGGGAATCGGCAAAATTATGGGAAAGTG
TGATGCGTTTCAAAGTTGTACCCATGAAGGTGTGGCGGATCTGCAACAAT
ACTGTGAGGCTGTTTGCGAGCTTTTGCGAGACCTTTACGAAAACGGAAAG
TGTCCTTTGAGTCTGGTACATGGGGACTTGCCCGACAATATGATCAAGGG
ATATGATGGTTCATGCATTCTTTTCGACTGGGGAGCCGCCCGAATTGATT
TTCCGTTATGCGACCTACTTGCAATGGAAGATAATGTAAGTTCAGATGTC
TTTGAAGAATATCTGAGCTTGTGGGAAGCGTATGCCTCACCATCTGAACT
ACGGTCCTTGTTTGGAATAGTATTTATCAAAGTTAGACTTATCTGGGTTT
TGAGGGAATATGAGGAAGAAATAAAGCTTCAGCCGATCAACAGGCTAGAA
GATATGACAATAGATATGCTTGAAGATTTGTTGGTCGACGCCAAAGAAGA
AATAGGAACGAGGAAGTCACAAGTTAAGAACAGAGACTGA
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protein sequence of Ggra11035.t1

>Ggra11035.t1 ID=Ggra11035.t1|Name=Ggra11035.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MCECFRDQFEKVCGTKYEILFLHASINNYYTAKDRPIHAIFQCVSPIDDK
SNKVVSPVSKEYKWMEIKEVDFLVEDSLSCWVYDMEEFSAHFTLTRPEHM
KCAEDGYRPWELPMWHINTTLEAKDALARLGYVVKGKFEQWQITHNSAVL
RVATSKGHVYLKASNRREGKITDLIAGFAPELVRKPILVNEEKGWMLMDD
YGTIVGRSSEAEYERFCIPIGQLHLESIRHLETLKEAGVPFQSAQSFIQR
TEKMLKDKGIGKIMGKCDAFQSCTHEGVADLQQYCEAVCELLRDLYENGK
CPLSLVHGDLPDNMIKGYDGSCILFDWGAARIDFPLCDLLAMEDNVSSDV
FEEYLSLWEAYASPSELRSLFGIVFIKVRLIWVLREYEEEIKLQPINRLE
DMTIDMLEDLLVDAKEEIGTRKSQVKNRD*
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mRNA from alignment at tig00000894_pilon:168321..169610-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11035.t1 ID=Ggra11035.t1|Name=Ggra11035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000894_pilon:168321..169610- (Gracilaria gracilis GNS1m male)
ATGTGCGAATGCTTCCGTGACCAGTTTGAAAAGGTGTGTGGAACAAAATA
TGAAATACTTTTCCTTCATGCGTCGATAAATAACTACTACACTGCTAAAG
ACAGGCCCATACATGCAATTTTTCAGTGTGTATCACCGATTGACGACAAG
TCCAACAAAGTAGTGTCACCGGTGTCTAAAGAGTACAAATGGATGGAGAT
TAAAGAAGTTGATTTCCTCGTGGAAGATTCTCTTTCTTGTTGGGTATACG
ATATGGAGGAATTCAGTGCTCATTTTACGTTAACGAGACCAGAACATATG
AAATGTGCAGAGGACGGGTATAGACCTTGGGAGCTACCGATGTGGCATAT
AAATACAACTCTTGAAGCAAAAGACGCACTCGCAAGGTTAGGATATGTTG
TGAAAGGCAAGTTTGAGCAGTGGCAAATCACCCACAACTCTGCTGTGTTA
CGTGTGGCAACAAGCAAGGGCCATGTGTATTTGAAGGCTAGCAACCGAAG
AGAAGGTAAAATAACGGATCTCATAGCGGGGTTTGCGCCTGAACTCGTTC
GAAAGCCGATATTGGTGAACGAAGAAAAGGGTTGGATGTTGATGGACGAC
TACGGAACTATTGTAGGTCGCAGTAGCGAGGCAGAATACGAAAGGTTTTG
TATTCCGATTGGACAGCTTCATCTTGAATCAATTCGACACCTTGAAACTC
TGAAGGAGGCTGGCGTTCCATTCCAGTCTGCTCAATCTTTTATACAGCGG
ACGGAGAAAATGCTGAAGGATAAGGGAATCGGCAAAATTATGGGAAAGTG
TGATGCGTTTCAAAGTTGTACCCATGAAGGTGTGGCGGATCTGCAACAAT
ACTGTGAGGCTGTTTGCGAGCTTTTGCGAGACCTTTACGAAAACGGAAAG
TGTCCTTTGAGTCTGGTACATGGGGACTTGCCCGACAATATGATCAAGGG
ATATGATGGTTCATGCATTCTTTTCGACTGGGGAGCCGCCCGAATTGATT
TTCCGTTATGCGACCTACTTGCAATGGAAGATAATGTAAGTTCAGATGTC
TTTGAAGAATATCTGAGCTTGTGGGAAGCGTATGCCTCACCATCTGAACT
ACGGTCCTTGTTTGGAATAGTATTTATCAAAGTTAGACTTATCTGGGTTT
TGAGGGAATATGAGGAAGAAATAAAGCTTCAGCCGATCAACAGGCTAGAA
GATATGACAATAGATATGCTTGAAGATTTGTTGGTCGACGCCAAAGAAGA
AATAGGAACGAGGAAGTCACAAGTTAAGAACAGAGACTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:168321..169610-

>Ggra11035.t1 ID=Ggra11035.t1|Name=Ggra11035.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000894_pilon:168321..169610- (Gracilaria gracilis GNS1m male)
ATGTGCGAATGCTTCCGTGACCAGTTTGAAAAGGTGTGTGGAACAAAATA
TGAAATACTTTTCCTTCATGCGTCGATAAATAACTACTACACTGCTAAAG
ACAGGCCCATACATGCAATTTTTCAGTGTGTATCACCGATTGACGACAAG
TCCAACAAAGTAGTGTCACCGGTGTCTAAAGAGTACAAATGGATGGAGAT
TAAAGAAGTTGATTTCCTCGTGGAAGATTCTCTTTCTTGTTGGGTATACG
ATATGGAGGAATTCAGTGCTCATTTTACGTTAACGAGACCAGAACATATG
AAATGTGCAGAGGACGGGTATAGACCTTGGGAGCTACCGATGTGGCATAT
AAATACAACTCTTGAAGCAAAAGACGCACTCGCAAGGTTAGGATATGTTG
TGAAAGGCAAGTTTGAGCAGTGGCAAATCACCCACAACTCTGCTGTGTTA
CGTGTGGCAACAAGCAAGGGCCATGTGTATTTGAAGGCTAGCAACCGAAG
AGAAGGTAAAATAACGGATCTCATAGCGGGGTTTGCGCCTGAACTCGTTC
GAAAGCCGATATTGGTGAACGAAGAAAAGGGTTGGATGTTGATGGACGAC
TACGGAACTATTGTAGGTCGCAGTAGCGAGGCAGAATACGAAAGGTTTTG
TATTCCGATTGGACAGCTTCATCTTGAATCAATTCGACACCTTGAAACTC
TGAAGGAGGCTGGCGTTCCATTCCAGTCTGCTCAATCTTTTATACAGCGG
ACGGAGAAAATGCTGAAGGATAAGGGAATCGGCAAAATTATGGGAAAGTG
TGATGCGTTTCAAAGTTGTACCCATGAAGGTGTGGCGGATCTGCAACAAT
ACTGTGAGGCTGTTTGCGAGCTTTTGCGAGACCTTTACGAAAACGGAAAG
TGTCCTTTGAGTCTGGTACATGGGGACTTGCCCGACAATATGATCAAGGG
ATATGATGGTTCATGCATTCTTTTCGACTGGGGAGCCGCCCGAATTGATT
TTCCGTTATGCGACCTACTTGCAATGGAAGATAATGTAAGTTCAGATGTC
TTTGAAGAATATCTGAGCTTGTGGGAAGCGTATGCCTCACCATCTGAACT
ACGGTCCTTGTTTGGAATAGTATTTATCAAAGTTAGACTTATCTGGGTTT
TGAGGGAATATGAGGAAGAAATAAAGCTTCAGCCGATCAACAGGCTAGAA
GATATGACAATAGATATGCTTGAAGATTTGTTGGTCGACGCCAAAGAAGA
AATAGGAACGAGGAAGTCACAAGTTAAGAACAGAGACTGA
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