Ggra11010.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11010.t1
Unique NameGgra11010.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:19042..20876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11010Ggra11010Gracilaria gracilis GNS1m malegenetig00000224_pilon 19042..20876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11010.t1Ggra11010.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 19042..20876 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11010.t1.start1Ggra11010.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 19042..19044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11010.t1.CDS1Ggra11010.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 19042..19197 +
Ggra11010.t1.CDS2Ggra11010.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000224_pilon 19293..19815 +
Ggra11010.t1.CDS3Ggra11010.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000224_pilon 19886..20015 +
Ggra11010.t1.CDS4Ggra11010.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000224_pilon 20108..20248 +
Ggra11010.t1.CDS5Ggra11010.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000224_pilon 20324..20876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11010.t1.exon1Ggra11010.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 19042..19197 +
Ggra11010.t1.exon2Ggra11010.t1.exon2Gracilaria gracilis GNS1m maleexontig00000224_pilon 19293..19815 +
Ggra11010.t1.exon3Ggra11010.t1.exon3Gracilaria gracilis GNS1m maleexontig00000224_pilon 19886..20015 +
Ggra11010.t1.exon4Ggra11010.t1.exon4Gracilaria gracilis GNS1m maleexontig00000224_pilon 20108..20248 +
Ggra11010.t1.exon5Ggra11010.t1.exon5Gracilaria gracilis GNS1m maleexontig00000224_pilon 20324..20876 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11010.t1.intron1Ggra11010.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000224_pilon 19198..19292 +
Ggra11010.t1.intron2Ggra11010.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000224_pilon 19816..19885 +
Ggra11010.t1.intron3Ggra11010.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000224_pilon 20016..20107 +
Ggra11010.t1.intron4Ggra11010.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000224_pilon 20249..20323 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11010.t1.stop1Ggra11010.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 20874..20876 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11010.t1 ID=Ggra11010.t1|Name=Ggra11010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MWVEHLCLFLLVSVTLHAVSGLKNELSGYPPLRCCYMDDPPISFHSGHNH
WSNGLEGVLKDHLLQHQSYLNWTCSTNGPFQQTEDFNNFVFSMYKCTNKS
SRNIIDSPDCKCDIGIGGWFQTPDRFRKVDFLPPFAYDQYVAFTHVSEAT
VSGRVWFFLQTFDGKVWGCIMALFGIFSFLKVLDIQFAVPAQYTPPPENY
NGFQRYIYHLTRTRPLYRLRNACQSTLMRMLMLSDEPVVENGNSMRQWFL
NLILSACSLFLVLSYESSMTAFLVQESIEAKYQSAADLLNCRIDPSEICV
LRGGALEPYWKDSIANDECHFQNPPHYFNSYKTLFQAVEDGQCKYGVVTK
SAITSAIREKYCGHFVIVGKPMSGTGGGLSMVLPKGSNLTEIMSLATLEM
MRSQTTSYLMQYFNNLPQCDADVYTTLSFDKLQMFFKIAFSLLAIMFLVM
VLIPQRALTHQRSEEVPIDHEEHPVGEAKSRCSKSLSSSSTEHSSNDSLV
*
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spliced messenger RNA

>Ggra11010.t1 ID=Ggra11010.t1|Name=Ggra11010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000224_pilon:19042..20876+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGTAGAACACTTGTGCCTTTTTCTTCTCGTGTCCGTCACACTGCA
TGCCGTTTCTGGTCTCAAGAATGAACTATCGGGGTACCCACCTCTACGCT
GCTGCTATATGGATGATCCTCCTATCAGCTTCCACAGCGGGCACAATCAC
TGGAGCAATGGCCTGGAGGGTGTCCTCAAAGATCATCTACTTCAACATCA
ATCTTATCTGAACTGGACATGCTCAACCAATGGACCTTTCCAACAAACAG
AAGACTTCAATAATTTCGTGTTCTCCATGTACAAATGCACGAACAAATCA
TCTAGAAATATCATTGACTCACCCGATTGCAAGTGTGATATCGGCATAGG
GGGTTGGTTCCAGACACCGGATCGCTTTAGAAAAGTGGATTTCTTGCCAC
CGTTTGCCTATGATCAATATGTGGCTTTCACGCACGTCTCTGAAGCTACT
GTCTCCGGGAGAGTGTGGTTCTTCCTCCAGACCTTTGACGGAAAGGTCTG
GGGTTGCATTATGGCTTTGTTCGGTATTTTCTCGTTTTTAAAGGTTTTGG
ACATTCAATTCGCTGTGCCCGCGCAATATACCCCACCGCCAGAGAATTAT
AATGGATTTCAACGATACATCTATCATCTCACGAGGACTAGACCGCTGTA
TCGATTGAGAAACGCTTGTCAAAGTACACTGATGAGAATGCTAATGCTCT
CCGACGAGCCCGTCGTTGAAAATGGTAATTCTATGCGCCAATGGTTCCTG
AACTTAATTCTGAGCGCGTGTTCTCTCTTTCTGGTATTATCATATGAGTC
AAGTATGACAGCATTTCTGGTACAAGAATCTATCGAAGCTAAGTATCAAT
CTGCCGCTGATCTTCTGAATTGTCGCATTGACCCCTCGGAAATATGTGTC
CTTAGAGGAGGTGCTCTTGAGCCCTATTGGAAGGACTCTATTGCCAATGA
CGAGTGCCATTTTCAGAACCCGCCGCATTATTTTAATTCATACAAGACTC
TCtttcaagcggttgaagatgggcaatgcaagtatggtgttgtcaccaaa
tccgctatcacatccgcaattcgcgaaaagtactgCGGCCATTTCGTAAT
TGTGGGAAAGCCAATGTCGGGCACGGGTGGTGGTCTTTCAATGGTGCTTC
CCAAAGGTAGCAACCTGACAGAGATAATGAGCTTGGCCACGCTGGAGATG
ATGAGAAGTCAGACTACCTCATATCTCATGCAGTACTTCAACAATCTACC
GCAGTGCGATGCGGATGTGTACACTACTCTCAGCTTCGACAAGCTTCAAA
TGTTTTTCAAAATTGCTTTTTCTCTCCTAGCGATTATGTTTTTGGTGATG
GTGCTGATTCCTCAGCGAGCTTTGACACATCAAAGAAGTGAAGAGGTGCC
GATTGACCACGAAGAGCACCCTGTGGGTGAAGCCAAGTCACGGTGTTCAA
AATCCTTGAGCTCCTCCTCAACAGAACACAGCAGCAACGATTCGTTGGTT
TGA
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protein sequence of Ggra11010.t1

>Ggra11010.t1 ID=Ggra11010.t1|Name=Ggra11010.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MWVEHLCLFLLVSVTLHAVSGLKNELSGYPPLRCCYMDDPPISFHSGHNH
WSNGLEGVLKDHLLQHQSYLNWTCSTNGPFQQTEDFNNFVFSMYKCTNKS
SRNIIDSPDCKCDIGIGGWFQTPDRFRKVDFLPPFAYDQYVAFTHVSEAT
VSGRVWFFLQTFDGKVWGCIMALFGIFSFLKVLDIQFAVPAQYTPPPENY
NGFQRYIYHLTRTRPLYRLRNACQSTLMRMLMLSDEPVVENGNSMRQWFL
NLILSACSLFLVLSYESSMTAFLVQESIEAKYQSAADLLNCRIDPSEICV
LRGGALEPYWKDSIANDECHFQNPPHYFNSYKTLFQAVEDGQCKYGVVTK
SAITSAIREKYCGHFVIVGKPMSGTGGGLSMVLPKGSNLTEIMSLATLEM
MRSQTTSYLMQYFNNLPQCDADVYTTLSFDKLQMFFKIAFSLLAIMFLVM
VLIPQRALTHQRSEEVPIDHEEHPVGEAKSRCSKSLSSSSTEHSSNDSLV
*
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mRNA from alignment at tig00000224_pilon:19042..20876+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11010.t1 ID=Ggra11010.t1|Name=Ggra11010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1835bp|location=Sequence derived from alignment at tig00000224_pilon:19042..20876+ (Gracilaria gracilis GNS1m male)
ATGTGGGTAGAACACTTGTGCCTTTTTCTTCTCGTGTCCGTCACACTGCA
TGCCGTTTCTGGTCTCAAGAATGAACTATCGGGGTACCCACCTCTACGCT
GCTGCTATATGGATGATCCTCCTATCAGCTTCCACAGCGGGCACAATCAC
TGGAGCGTACGTTACGCTGCGTTCGTTAGCCGTTTTCTGCAGCAGTCGTT
GGAAAAGAGTTACTAACGCAACTGGTTTTTGTCTTCACTAAAACTCTTCA
GAATGGCCTGGAGGGTGTCCTCAAAGATCATCTACTTCAACATCAATCTT
ATCTGAACTGGACATGCTCAACCAATGGACCTTTCCAACAAACAGAAGAC
TTCAATAATTTCGTGTTCTCCATGTACAAATGCACGAACAAATCATCTAG
AAATATCATTGACTCACCCGATTGCAAGTGTGATATCGGCATAGGGGGTT
GGTTCCAGACACCGGATCGCTTTAGAAAAGTGGATTTCTTGCCACCGTTT
GCCTATGATCAATATGTGGCTTTCACGCACGTCTCTGAAGCTACTGTCTC
CGGGAGAGTGTGGTTCTTCCTCCAGACCTTTGACGGAAAGGTCTGGGGTT
GCATTATGGCTTTGTTCGGTATTTTCTCGTTTTTAAAGGTTTTGGACATT
CAATTCGCTGTGCCCGCGCAATATACCCCACCGCCAGAGAATTATAATGG
ATTTCAACGATACATCTATCATCTCACGAGGACTAGACCGCTGTATCGAT
TGAGAAACGCTTGTCAAAGTACACGTAAGTCCTCGCTTTTCGTCTTTCAA
AAGTTTGGAGTACATTACTGACCCTTGCTTTCTTCTTCCCGAAGTGATGA
GAATGCTAATGCTCTCCGACGAGCCCGTCGTTGAAAATGGTAATTCTATG
CGCCAATGGTTCCTGAACTTAATTCTGAGCGCGTGTTCTCTCTTTCTGGT
ATTATCATATGAGTCAAGTATGACGTACGTGTCCCGGGATCATCATTCGT
ATTAAATTCTTACGGCTACAGACGTTTGAGGTTCAGGCATTGACCATTTC
TTTTTTTCATTCCAAGAGCATTTCTGGTACAAGAATCTATCGAAGCTAAG
TATCAATCTGCCGCTGATCTTCTGAATTGTCGCATTGACCCCTCGGAAAT
ATGTGTCCTTAGAGGAGGTGCTCTTGAGCCCTATTGGAAGGACTCTATTG
CCAATGAGTACGTTCAACATTCCCTTTTCGTTGGGCAACAAGCATCTGAC
CGACTCTTTTCTCTTAACTTGCTTTATCGCAGCGAGTGCCATTTTCAGAA
CCCGCCGCATTATTTTAATTCATACAAGACTCTCtttcaagcggttgaag
atgggcaatgcaagtatggtgttgtcaccaaatccgctatcacatccgca
attcgcgaaaagtactgCGGCCATTTCGTAATTGTGGGAAAGCCAATGTC
GGGCACGGGTGGTGGTCTTTCAATGGTGCTTCCCAAAGGTAGCAACCTGA
CAGAGATAATGAGCTTGGCCACGCTGGAGATGATGAGAAGTCAGACTACC
TCATATCTCATGCAGTACTTCAACAATCTACCGCAGTGCGATGCGGATGT
GTACACTACTCTCAGCTTCGACAAGCTTCAAATGTTTTTCAAAATTGCTT
TTTCTCTCCTAGCGATTATGTTTTTGGTGATGGTGCTGATTCCTCAGCGA
GCTTTGACACATCAAAGAAGTGAAGAGGTGCCGATTGACCACGAAGAGCA
CCCTGTGGGTGAAGCCAAGTCACGGTGTTCAAAATCCTTGAGCTCCTCCT
CAACAGAACACAGCAGCAACGATTCGTTGGTTTGA
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Coding sequence (CDS) from alignment at tig00000224_pilon:19042..20876+

>Ggra11010.t1 ID=Ggra11010.t1|Name=Ggra11010.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000224_pilon:19042..20876+ (Gracilaria gracilis GNS1m male)
ATGTGGGTAGAACACTTGTGCCTTTTTCTTCTCGTGTCCGTCACACTGCA
TGCCGTTTCTGGTCTCAAGAATGAACTATCGGGGTACCCACCTCTACGCT
GCTGCTATATGGATGATCCTCCTATCAGCTTCCACAGCGGGCACAATCAC
TGGAGCAATGGCCTGGAGGGTGTCCTCAAAGATCATCTACTTCAACATCA
ATCTTATCTGAACTGGACATGCTCAACCAATGGACCTTTCCAACAAACAG
AAGACTTCAATAATTTCGTGTTCTCCATGTACAAATGCACGAACAAATCA
TCTAGAAATATCATTGACTCACCCGATTGCAAGTGTGATATCGGCATAGG
GGGTTGGTTCCAGACACCGGATCGCTTTAGAAAAGTGGATTTCTTGCCAC
CGTTTGCCTATGATCAATATGTGGCTTTCACGCACGTCTCTGAAGCTACT
GTCTCCGGGAGAGTGTGGTTCTTCCTCCAGACCTTTGACGGAAAGGTCTG
GGGTTGCATTATGGCTTTGTTCGGTATTTTCTCGTTTTTAAAGGTTTTGG
ACATTCAATTCGCTGTGCCCGCGCAATATACCCCACCGCCAGAGAATTAT
AATGGATTTCAACGATACATCTATCATCTCACGAGGACTAGACCGCTGTA
TCGATTGAGAAACGCTTGTCAAAGTACACTGATGAGAATGCTAATGCTCT
CCGACGAGCCCGTCGTTGAAAATGGTAATTCTATGCGCCAATGGTTCCTG
AACTTAATTCTGAGCGCGTGTTCTCTCTTTCTGGTATTATCATATGAGTC
AAGTATGACAGCATTTCTGGTACAAGAATCTATCGAAGCTAAGTATCAAT
CTGCCGCTGATCTTCTGAATTGTCGCATTGACCCCTCGGAAATATGTGTC
CTTAGAGGAGGTGCTCTTGAGCCCTATTGGAAGGACTCTATTGCCAATGA
CGAGTGCCATTTTCAGAACCCGCCGCATTATTTTAATTCATACAAGACTC
TCtttcaagcggttgaagatgggcaatgcaagtatggtgttgtcaccaaa
tccgctatcacatccgcaattcgcgaaaagtactgCGGCCATTTCGTAAT
TGTGGGAAAGCCAATGTCGGGCACGGGTGGTGGTCTTTCAATGGTGCTTC
CCAAAGGTAGCAACCTGACAGAGATAATGAGCTTGGCCACGCTGGAGATG
ATGAGAAGTCAGACTACCTCATATCTCATGCAGTACTTCAACAATCTACC
GCAGTGCGATGCGGATGTGTACACTACTCTCAGCTTCGACAAGCTTCAAA
TGTTTTTCAAAATTGCTTTTTCTCTCCTAGCGATTATGTTTTTGGTGATG
GTGCTGATTCCTCAGCGAGCTTTGACACATCAAAGAAGTGAAGAGGTGCC
GATTGACCACGAAGAGCACCCTGTGGGTGAAGCCAAGTCACGGTGTTCAA
AATCCTTGAGCTCCTCCTCAACAGAACACAGCAGCAACGATTCGTTGGTT
TGA
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