Ggra11009.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11009.t1
Unique NameGgra11009.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:17708..18418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK56185
PFAMsCyclin
Max annot lvl2759|Eukaryota
Evalue6.84e-19
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,3ZCB3@5878|Ciliophora
DescriptionCyclin
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11009Ggra11009Gracilaria gracilis GNS1m malegenetig00000224_pilon 17708..18418 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11009.t1.start1Ggra11009.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 17708..17710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11009.t1.CDS1Ggra11009.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 17708..18418 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11009.t1.exon1Ggra11009.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 17708..18418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11009.t1.stop1Ggra11009.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 18416..18418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11009.t1Ggra11009.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 17708..18418 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11009.t1 ID=Ggra11009.t1|Name=Ggra11009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MDQRNNFERMASRRRSSGPALFSSTVHIPGPRAETVMRERRTRLTTSKLF
KSTLDCYLTMVIQRSESLPLAQNHNEIGCLEDAPPPPPEQSFFYSSELPS
ITPVEYLHHLSQFGNFSNSAYILAFYYIRKLTNLGLQGLRPNSYSIHRML
LAAIMLAVKFVEDHHFNNTHFAQLGGVDVDEISLLETEMLSLLQYDLFVS
AEQYAAFERFMVGEVLSCNDLQFFALQDKLRDFVFF*
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spliced messenger RNA

>Ggra11009.t1 ID=Ggra11009.t1|Name=Ggra11009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000224_pilon:17708..18418+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAACGGAATAATTTCGAAAGAATGGCAAGTCGCCGTCGCTCATC
CGGCCCGGCATTATTCAGCAGTACCGTTCATATTCCTGGCCCCAGGGCAG
AAACTGTCATGCGCGAGAGGAGGACCCGCCTTACAACGAGTAAATTGTTC
AAGAGCACTTTGGATTGCTACCTGACGATGGTGATTCAACGCAGCGAGAG
CTTGCCATTGGCTCAGAATCACAATGAAATAGGGTGCTTGGAGGACGCTC
CTCCTCCTCCTCCGGAGCAGTCTTTCTTCTACTCGTCCGAATTGCCGAGC
ATCACACCTGTGGAATATCTTCATCACCTGTCACAATTCGGCAATTTTTC
TAATTCTGCGTACATCTTAGCATTTTATTATATTCGAAAACTCACAAATC
TAGGACTGCAAGGTCTCAGACCCAATTCCTACAGTATTCACCGAATGCTG
CTCGCTGCCATTATGTTGGCGGTCAAGTTCGTAGAAGATCATCACTTCAA
CAACACGCACTTTGCACAGCTGGGGGGTGTGGATGTGGACGAGATTAGCT
TGTTAGAAACGGAGATGCTCAGCTTGTTGCAGTATGATCTCTTTGTGAGT
GCTGAACAATATGCGGCCTTTGAACGATTTATGGTGGGGGAGGTTCTCTC
CTGCAACGATTTACAGTTCTTCGCGCTACAAGACAAGCTTCGGGATTTTG
TCTTCTTTTAA
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protein sequence of Ggra11009.t1

>Ggra11009.t1 ID=Ggra11009.t1|Name=Ggra11009.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MDQRNNFERMASRRRSSGPALFSSTVHIPGPRAETVMRERRTRLTTSKLF
KSTLDCYLTMVIQRSESLPLAQNHNEIGCLEDAPPPPPEQSFFYSSELPS
ITPVEYLHHLSQFGNFSNSAYILAFYYIRKLTNLGLQGLRPNSYSIHRML
LAAIMLAVKFVEDHHFNNTHFAQLGGVDVDEISLLETEMLSLLQYDLFVS
AEQYAAFERFMVGEVLSCNDLQFFALQDKLRDFVFF*
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mRNA from alignment at tig00000224_pilon:17708..18418+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11009.t1 ID=Ggra11009.t1|Name=Ggra11009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000224_pilon:17708..18418+ (Gracilaria gracilis GNS1m male)
ATGGATCAACGGAATAATTTCGAAAGAATGGCAAGTCGCCGTCGCTCATC
CGGCCCGGCATTATTCAGCAGTACCGTTCATATTCCTGGCCCCAGGGCAG
AAACTGTCATGCGCGAGAGGAGGACCCGCCTTACAACGAGTAAATTGTTC
AAGAGCACTTTGGATTGCTACCTGACGATGGTGATTCAACGCAGCGAGAG
CTTGCCATTGGCTCAGAATCACAATGAAATAGGGTGCTTGGAGGACGCTC
CTCCTCCTCCTCCGGAGCAGTCTTTCTTCTACTCGTCCGAATTGCCGAGC
ATCACACCTGTGGAATATCTTCATCACCTGTCACAATTCGGCAATTTTTC
TAATTCTGCGTACATCTTAGCATTTTATTATATTCGAAAACTCACAAATC
TAGGACTGCAAGGTCTCAGACCCAATTCCTACAGTATTCACCGAATGCTG
CTCGCTGCCATTATGTTGGCGGTCAAGTTCGTAGAAGATCATCACTTCAA
CAACACGCACTTTGCACAGCTGGGGGGTGTGGATGTGGACGAGATTAGCT
TGTTAGAAACGGAGATGCTCAGCTTGTTGCAGTATGATCTCTTTGTGAGT
GCTGAACAATATGCGGCCTTTGAACGATTTATGGTGGGGGAGGTTCTCTC
CTGCAACGATTTACAGTTCTTCGCGCTACAAGACAAGCTTCGGGATTTTG
TCTTCTTTTAA
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Coding sequence (CDS) from alignment at tig00000224_pilon:17708..18418+

>Ggra11009.t1 ID=Ggra11009.t1|Name=Ggra11009.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000224_pilon:17708..18418+ (Gracilaria gracilis GNS1m male)
ATGGATCAACGGAATAATTTCGAAAGAATGGCAAGTCGCCGTCGCTCATC
CGGCCCGGCATTATTCAGCAGTACCGTTCATATTCCTGGCCCCAGGGCAG
AAACTGTCATGCGCGAGAGGAGGACCCGCCTTACAACGAGTAAATTGTTC
AAGAGCACTTTGGATTGCTACCTGACGATGGTGATTCAACGCAGCGAGAG
CTTGCCATTGGCTCAGAATCACAATGAAATAGGGTGCTTGGAGGACGCTC
CTCCTCCTCCTCCGGAGCAGTCTTTCTTCTACTCGTCCGAATTGCCGAGC
ATCACACCTGTGGAATATCTTCATCACCTGTCACAATTCGGCAATTTTTC
TAATTCTGCGTACATCTTAGCATTTTATTATATTCGAAAACTCACAAATC
TAGGACTGCAAGGTCTCAGACCCAATTCCTACAGTATTCACCGAATGCTG
CTCGCTGCCATTATGTTGGCGGTCAAGTTCGTAGAAGATCATCACTTCAA
CAACACGCACTTTGCACAGCTGGGGGGTGTGGATGTGGACGAGATTAGCT
TGTTAGAAACGGAGATGCTCAGCTTGTTGCAGTATGATCTCTTTGTGAGT
GCTGAACAATATGCGGCCTTTGAACGATTTATGGTGGGGGAGGTTCTCTC
CTGCAACGATTTACAGTTCTTCGCGCTACAAGACAAGCTTCGGGATTTTG
TCTTCTTTTAA
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