Ggra1100.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1100.t1
Unique NameGgra1100.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:43916..44941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002608812.1
Preferred nameSULT6B1
PFAMsSulfotransfer_1
Max annot lvl33208|Metazoa
KEGG koko:K01025
GOsGO:0003674,GO:0003824,GO:0004062,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009410,GO:0009987,GO:0016740,GO:0016782,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042221,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050427,GO:0050896,GO:0051716,GO:0055086,GO:0070887,GO:0071466,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue1.77e-12
EggNOG OGsKOG1584@1|root,KOG1584@2759|Eukaryota,39U98@33154|Opisthokonta,3BDM8@33208|Metazoa,3CWPN@33213|Bilateria,483VS@7711|Chordata
DescriptionBelongs to the sulfotransferase 1 family
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1100Ggra1100Gracilaria gracilis GNS1m malegenetig00000945_pilon 43916..44941 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1100.t1.stop1Ggra1100.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 43916..43918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1100.t1.CDS1Ggra1100.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 43916..44941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1100.t1.exon1Ggra1100.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 43916..44941 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1100.t1.start1Ggra1100.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 44939..44941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1100.t1Ggra1100.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 43916..44941 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1100.t1 ID=Ggra1100.t1|Name=Ggra1100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MSNNASERAEAEADTVLRTFFKTFKKFEDSFNDPARNIRIEDVVISSNYA
SGSNLMQHMIYQLLAATNRVPSDPDGSAYLDTTVVVPITELRDALNLNEP
HHKSYPQIWKTHSEITPFLEQPGHKRRKILYCVRNPLDVCRSFLDFTGEW
FSGMSLKDQTVRKSIYPRYFMEYFLQCERLSDGFYPENCKRLSKWFKHVK
GWTEHDKGRTLYLIYEDVIQDIPKTIETVASFLSVPVSQKQIQLVAARCD
RAWMASNPRTKAKTFSKVFGLDEAKSGRTRRLDSVSFRDVELPAFCKEAC
WRMFYDALGLHTYNDLVEELRCRNEVLFTRLKSRTDSDRWI*
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spliced messenger RNA

>Ggra1100.t1 ID=Ggra1100.t1|Name=Ggra1100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000945_pilon:43916..44941- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATAACGCTTCAGAACGTGCCGAGGCAGAAGCAGATACAGTTCT
ACGCACGTTCTTCAAAACGTTCAAGAAGTTTGAAGACAGTTTTAATGACC
CAGCACGAAACATTCGAATCGAAGATGTGGTCATATCATCAAACTATGCG
AGCGGATCCAATCTCATGCAGCACATGATCTATCAACTTCTAGCGGCTAC
TAATCGCGTGCCCTCTGATCCTGACGGAAGTGCGTATCTCGATACAACTG
TCGTGGTGCCGATTACAGAACTACGTGATGCCCTGAATCTGAATGAACCG
CATCACAAGAGTTATCCACAAATATGGAAAACTCATTCAGAAATCACCCC
CTTTCTGGAACAACCTGGGCACAAAAGAAGGAAGATTCTGTACTGTGTTC
GTAACCCACTAGATGTTTGTCGCAGTTTCCTGGATTTCACCGGTGAGTGG
TTTTCTGGAATGAGTCTGAAAGACCAAACGGTTCGAAAATCGATATATCC
CAGATATTTCATGGAATACTTCCTTCAATGTGAACGTCTTTCAGATGGAT
TCTATCCGGAGAACTGTAAACGTTTAAGCAAGTGGTTCAAGCATGTGAAG
GGCTGGACAGAACATGATAAAGGAAGAACGCTGTACTTAATATACGAAGA
CGTTATCCAAGATATTCCGAAAACTATTGAAACCGTCGCCAGCTTTCTGT
CTGTACCAGTTTCTCAGAAGCAGATTCAGCTCGTTGCAGCAAGATGTGAT
CGTGCTTGGATGGCTAGCAATCCCCGTACGAAAGCAAAAACGTTCAGTAA
GGTTTTCGGATTAGACGAGGCCAAATCTGGTCGAACTCGACGTTTGGATT
CTGTTAGCTTCAGAGATGTCGAATTACCAGCTTTCTGCAAAGAGGCATGT
TGGAGAATGTTTTATGATGCCCTAGGTCTTCACACGTATAACGATCTGGT
TGAGGAACTGCGGTGTAGAAATGAGGTATTGTTTACCAGACTGAAGAGTC
GAACAGACTCTGACCGTTGGATTTGA
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protein sequence of Ggra1100.t1

>Ggra1100.t1 ID=Ggra1100.t1|Name=Ggra1100.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MSNNASERAEAEADTVLRTFFKTFKKFEDSFNDPARNIRIEDVVISSNYA
SGSNLMQHMIYQLLAATNRVPSDPDGSAYLDTTVVVPITELRDALNLNEP
HHKSYPQIWKTHSEITPFLEQPGHKRRKILYCVRNPLDVCRSFLDFTGEW
FSGMSLKDQTVRKSIYPRYFMEYFLQCERLSDGFYPENCKRLSKWFKHVK
GWTEHDKGRTLYLIYEDVIQDIPKTIETVASFLSVPVSQKQIQLVAARCD
RAWMASNPRTKAKTFSKVFGLDEAKSGRTRRLDSVSFRDVELPAFCKEAC
WRMFYDALGLHTYNDLVEELRCRNEVLFTRLKSRTDSDRWI*
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mRNA from alignment at tig00000945_pilon:43916..44941-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1100.t1 ID=Ggra1100.t1|Name=Ggra1100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000945_pilon:43916..44941- (Gracilaria gracilis GNS1m male)
ATGAGCAATAACGCTTCAGAACGTGCCGAGGCAGAAGCAGATACAGTTCT
ACGCACGTTCTTCAAAACGTTCAAGAAGTTTGAAGACAGTTTTAATGACC
CAGCACGAAACATTCGAATCGAAGATGTGGTCATATCATCAAACTATGCG
AGCGGATCCAATCTCATGCAGCACATGATCTATCAACTTCTAGCGGCTAC
TAATCGCGTGCCCTCTGATCCTGACGGAAGTGCGTATCTCGATACAACTG
TCGTGGTGCCGATTACAGAACTACGTGATGCCCTGAATCTGAATGAACCG
CATCACAAGAGTTATCCACAAATATGGAAAACTCATTCAGAAATCACCCC
CTTTCTGGAACAACCTGGGCACAAAAGAAGGAAGATTCTGTACTGTGTTC
GTAACCCACTAGATGTTTGTCGCAGTTTCCTGGATTTCACCGGTGAGTGG
TTTTCTGGAATGAGTCTGAAAGACCAAACGGTTCGAAAATCGATATATCC
CAGATATTTCATGGAATACTTCCTTCAATGTGAACGTCTTTCAGATGGAT
TCTATCCGGAGAACTGTAAACGTTTAAGCAAGTGGTTCAAGCATGTGAAG
GGCTGGACAGAACATGATAAAGGAAGAACGCTGTACTTAATATACGAAGA
CGTTATCCAAGATATTCCGAAAACTATTGAAACCGTCGCCAGCTTTCTGT
CTGTACCAGTTTCTCAGAAGCAGATTCAGCTCGTTGCAGCAAGATGTGAT
CGTGCTTGGATGGCTAGCAATCCCCGTACGAAAGCAAAAACGTTCAGTAA
GGTTTTCGGATTAGACGAGGCCAAATCTGGTCGAACTCGACGTTTGGATT
CTGTTAGCTTCAGAGATGTCGAATTACCAGCTTTCTGCAAAGAGGCATGT
TGGAGAATGTTTTATGATGCCCTAGGTCTTCACACGTATAACGATCTGGT
TGAGGAACTGCGGTGTAGAAATGAGGTATTGTTTACCAGACTGAAGAGTC
GAACAGACTCTGACCGTTGGATTTGA
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Coding sequence (CDS) from alignment at tig00000945_pilon:43916..44941-

>Ggra1100.t1 ID=Ggra1100.t1|Name=Ggra1100.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000945_pilon:43916..44941- (Gracilaria gracilis GNS1m male)
ATGAGCAATAACGCTTCAGAACGTGCCGAGGCAGAAGCAGATACAGTTCT
ACGCACGTTCTTCAAAACGTTCAAGAAGTTTGAAGACAGTTTTAATGACC
CAGCACGAAACATTCGAATCGAAGATGTGGTCATATCATCAAACTATGCG
AGCGGATCCAATCTCATGCAGCACATGATCTATCAACTTCTAGCGGCTAC
TAATCGCGTGCCCTCTGATCCTGACGGAAGTGCGTATCTCGATACAACTG
TCGTGGTGCCGATTACAGAACTACGTGATGCCCTGAATCTGAATGAACCG
CATCACAAGAGTTATCCACAAATATGGAAAACTCATTCAGAAATCACCCC
CTTTCTGGAACAACCTGGGCACAAAAGAAGGAAGATTCTGTACTGTGTTC
GTAACCCACTAGATGTTTGTCGCAGTTTCCTGGATTTCACCGGTGAGTGG
TTTTCTGGAATGAGTCTGAAAGACCAAACGGTTCGAAAATCGATATATCC
CAGATATTTCATGGAATACTTCCTTCAATGTGAACGTCTTTCAGATGGAT
TCTATCCGGAGAACTGTAAACGTTTAAGCAAGTGGTTCAAGCATGTGAAG
GGCTGGACAGAACATGATAAAGGAAGAACGCTGTACTTAATATACGAAGA
CGTTATCCAAGATATTCCGAAAACTATTGAAACCGTCGCCAGCTTTCTGT
CTGTACCAGTTTCTCAGAAGCAGATTCAGCTCGTTGCAGCAAGATGTGAT
CGTGCTTGGATGGCTAGCAATCCCCGTACGAAAGCAAAAACGTTCAGTAA
GGTTTTCGGATTAGACGAGGCCAAATCTGGTCGAACTCGACGTTTGGATT
CTGTTAGCTTCAGAGATGTCGAATTACCAGCTTTCTGCAAAGAGGCATGT
TGGAGAATGTTTTATGATGCCCTAGGTCTTCACACGTATAACGATCTGGT
TGAGGAACTGCGGTGTAGAAATGAGGTATTGTTTACCAGACTGAAGAGTC
GAACAGACTCTGACCGTTGGATTTGA
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