Ggra1099.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1099.t1
Unique NameGgra1099.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:33203..33666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1099Ggra1099Gracilaria gracilis GNS1m malegenetig00000945_pilon 33203..33666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1099.t1Ggra1099.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 33203..33666 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1099.t1.start1Ggra1099.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 33203..33205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1099.t1.CDS1Ggra1099.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 33203..33541 +
Ggra1099.t1.CDS2Ggra1099.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000945_pilon 33658..33666 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1099.t1.exon1Ggra1099.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 33203..33541 +
Ggra1099.t1.exon2Ggra1099.t1.exon2Gracilaria gracilis GNS1m maleexontig00000945_pilon 33658..33666 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1099.t1.intron1Ggra1099.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000945_pilon 33542..33657 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1099.t1.stop1Ggra1099.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 33664..33666 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1099.t1 ID=Ggra1099.t1|Name=Ggra1099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=116bp
MDAPSFSRPTGTKKAKREAAVEAGAHKLAKSIDGVSAAIKKSTQDRVFTA
SVDLRFKILRRMSLGSEELNMRLDDLFVETASMGRSVPQEVNNEAVKDAE
LESNIGKKLVSIRFN*
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spliced messenger RNA

>Ggra1099.t1 ID=Ggra1099.t1|Name=Ggra1099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00000945_pilon:33203..33666+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCACCTTCTTTCTCCCGTCCGACCGGAACCAAGAAGGCAAAGAG
AGAAGCTGCCGTGGAAGCTGGGGCACACAAATTAGCGAAATCTATTGACG
GTGTGTCGGCTGCTATCAAGAAGAGCACACAAGATCGTGTGTTTACGGCT
TCGGTTGATCTTCGTTTCAAGATACTTCGCCGTATGAGTCTCGGTTCTGA
GGAGTTGAATATGCGTTTGGATGACCTATTTGTGGAAACAGCATCTATGG
GACGCTCTGTGCCGCAAGAAGTCAACAATGAAGCAGTGAAAGACGCAGAA
TTAGAATCAAACATCGGAAAAAAATTGGTCTCGATTCGGTTCAATTGA
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protein sequence of Ggra1099.t1

>Ggra1099.t1 ID=Ggra1099.t1|Name=Ggra1099.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MDAPSFSRPTGTKKAKREAAVEAGAHKLAKSIDGVSAAIKKSTQDRVFTA
SVDLRFKILRRMSLGSEELNMRLDDLFVETASMGRSVPQEVNNEAVKDAE
LESNIGKKLVSIRFN*
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mRNA from alignment at tig00000945_pilon:33203..33666+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1099.t1 ID=Ggra1099.t1|Name=Ggra1099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp|location=Sequence derived from alignment at tig00000945_pilon:33203..33666+ (Gracilaria gracilis GNS1m male)
ATGGATGCACCTTCTTTCTCCCGTCCGACCGGAACCAAGAAGGCAAAGAG
AGAAGCTGCCGTGGAAGCTGGGGCACACAAATTAGCGAAATCTATTGACG
GTGTGTCGGCTGCTATCAAGAAGAGCACACAAGATCGTGTGTTTACGGCT
TCGGTTGATCTTCGTTTCAAGATACTTCGCCGTATGAGTCTCGGTTCTGA
GGAGTTGAATATGCGTTTGGATGACCTATTTGTGGAAACAGCATCTATGG
GACGCTCTGTGCCGCAAGAAGTCAACAATGAAGCAGTGAAAGACGCAGAA
TTAGAATCAAACATCGGAAAAAAATTGGTCTCGATTCGGGTACGGTGTCT
GTCGATGGCCATGATGCTGCCAGTGAGGCCCTCAAAGACATGGGTATCAC
CCCTGCGGTCACGGAGGCAGACCAAAAAAGCTATATTTTCTCGCTTCGTA
CGCAGTTCAATTGA
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Coding sequence (CDS) from alignment at tig00000945_pilon:33203..33666+

>Ggra1099.t1 ID=Ggra1099.t1|Name=Ggra1099.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00000945_pilon:33203..33666+ (Gracilaria gracilis GNS1m male)
ATGGATGCACCTTCTTTCTCCCGTCCGACCGGAACCAAGAAGGCAAAGAG
AGAAGCTGCCGTGGAAGCTGGGGCACACAAATTAGCGAAATCTATTGACG
GTGTGTCGGCTGCTATCAAGAAGAGCACACAAGATCGTGTGTTTACGGCT
TCGGTTGATCTTCGTTTCAAGATACTTCGCCGTATGAGTCTCGGTTCTGA
GGAGTTGAATATGCGTTTGGATGACCTATTTGTGGAAACAGCATCTATGG
GACGCTCTGTGCCGCAAGAAGTCAACAATGAAGCAGTGAAAGACGCAGAA
TTAGAATCAAACATCGGAAAAAAATTGGTCTCGATTCGGTTCAATTGA
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