Ggra1098.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1098.t1
Unique NameGgra1098.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000185_piloncontigtig00000185_pilon:216207..216947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1098Ggra1098Gracilaria gracilis GNS1m malegenetig00000185_pilon 216207..216947 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1098.t1.stop1Ggra1098.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000185_pilon 216207..216209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1098.t1.CDS1Ggra1098.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000185_pilon 216207..216947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1098.t1.exon1Ggra1098.t1.exon1Gracilaria gracilis GNS1m maleexontig00000185_pilon 216207..216947 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1098.t1.start1Ggra1098.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000185_pilon 216945..216947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1098.t1Ggra1098.t1Gracilaria gracilis GNS1m malepolypeptidetig00000185_pilon 216207..216947 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1098.t1 ID=Ggra1098.t1|Name=Ggra1098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MRFYSLVCCALLTLLLSGTFAQKLTLKSCKQMCARQHMSHLRSSTCSSKS
TRSAVRTARVAAGGPCSSDADCSDGYACAASKTCNKVVKDVSYYVWTNDY
CEVFINGQYQGYVPTGFGVVQFKYSGTCDDIIMKVTNTGDYISSGIVMNY
GGWNHGSQGFHQAPNGIAIPIYGRAKLSPEGNFTNNDPSYDYMSWNEAVY
AVDMEQTGNFPKSMKDAGADPVTSDDVYTPDDTVMGIRYEFPECYS*
back to top

spliced messenger RNA

>Ggra1098.t1 ID=Ggra1098.t1|Name=Ggra1098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000185_pilon:216207..216947- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATTCTACTCTCTTGTGTGCTGTGCTCTGCTCACGCTGCTTCTCAG
CGGCACGTTTGCTCAAAAACTCACGCTCAAATCATGCAAGCAGATGTGTG
CCCGTCAACACATGTCCCACCTTCGCTCAAGTACCTGTTCGTCAAAGAGC
ACCCGGTCGGCCGTGCGCACGGCCCGTGTCGCAGCCGGCGGCCCGTGTTC
CAGCGACGCTGATTGTAGCGACGGCTACGCCTGCGCCGCAAGCAAGACGT
GCAACAAGGTGGTGAAGGATGTGTCATACTACGTGTGGACCAACGACTAC
TGCGAAGTGTTCATCAACGGACAGTATCAGGGATACGTGCCGACGGGCTT
TGGAGTTGTGCAGTTCAAGTACTCGGGCACTTGCGATGATATCATCATGA
AGGTGACCAACACGGGCGACTACATCTCTTCAGGCATCGTGATGAACTAC
GGTGGGTGGAACCATGGCAGCCAGGGCTTCCATCAAGCCCCGAATGGCAT
TGCCATTCCAATCTACGGACGCGCCAAACTGAGTCCGGAAGGCAACTTTA
CGAACAACGATCCATCGTATGATTACATGAGCTGGAATGAGGCCGTGTAC
GCGGTGGACATGGAGCAGACCGGAAACTTCCCCAAGTCAATGAAGGACGC
GGGCGCCGATCCGGTCACATCTGATGACGTTTACACTCCGGATGACACCG
TGATGGGCATTCGTTATGAATTCCCGGAATGCTATTCTTAA
back to top

protein sequence of Ggra1098.t1

>Ggra1098.t1 ID=Ggra1098.t1|Name=Ggra1098.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MRFYSLVCCALLTLLLSGTFAQKLTLKSCKQMCARQHMSHLRSSTCSSKS
TRSAVRTARVAAGGPCSSDADCSDGYACAASKTCNKVVKDVSYYVWTNDY
CEVFINGQYQGYVPTGFGVVQFKYSGTCDDIIMKVTNTGDYISSGIVMNY
GGWNHGSQGFHQAPNGIAIPIYGRAKLSPEGNFTNNDPSYDYMSWNEAVY
AVDMEQTGNFPKSMKDAGADPVTSDDVYTPDDTVMGIRYEFPECYS*
back to top

mRNA from alignment at tig00000185_pilon:216207..216947-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1098.t1 ID=Ggra1098.t1|Name=Ggra1098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000185_pilon:216207..216947- (Gracilaria gracilis GNS1m male)
ATGCGATTCTACTCTCTTGTGTGCTGTGCTCTGCTCACGCTGCTTCTCAG
CGGCACGTTTGCTCAAAAACTCACGCTCAAATCATGCAAGCAGATGTGTG
CCCGTCAACACATGTCCCACCTTCGCTCAAGTACCTGTTCGTCAAAGAGC
ACCCGGTCGGCCGTGCGCACGGCCCGTGTCGCAGCCGGCGGCCCGTGTTC
CAGCGACGCTGATTGTAGCGACGGCTACGCCTGCGCCGCAAGCAAGACGT
GCAACAAGGTGGTGAAGGATGTGTCATACTACGTGTGGACCAACGACTAC
TGCGAAGTGTTCATCAACGGACAGTATCAGGGATACGTGCCGACGGGCTT
TGGAGTTGTGCAGTTCAAGTACTCGGGCACTTGCGATGATATCATCATGA
AGGTGACCAACACGGGCGACTACATCTCTTCAGGCATCGTGATGAACTAC
GGTGGGTGGAACCATGGCAGCCAGGGCTTCCATCAAGCCCCGAATGGCAT
TGCCATTCCAATCTACGGACGCGCCAAACTGAGTCCGGAAGGCAACTTTA
CGAACAACGATCCATCGTATGATTACATGAGCTGGAATGAGGCCGTGTAC
GCGGTGGACATGGAGCAGACCGGAAACTTCCCCAAGTCAATGAAGGACGC
GGGCGCCGATCCGGTCACATCTGATGACGTTTACACTCCGGATGACACCG
TGATGGGCATTCGTTATGAATTCCCGGAATGCTATTCTTAA
back to top

Coding sequence (CDS) from alignment at tig00000185_pilon:216207..216947-

>Ggra1098.t1 ID=Ggra1098.t1|Name=Ggra1098.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000185_pilon:216207..216947- (Gracilaria gracilis GNS1m male)
ATGCGATTCTACTCTCTTGTGTGCTGTGCTCTGCTCACGCTGCTTCTCAG
CGGCACGTTTGCTCAAAAACTCACGCTCAAATCATGCAAGCAGATGTGTG
CCCGTCAACACATGTCCCACCTTCGCTCAAGTACCTGTTCGTCAAAGAGC
ACCCGGTCGGCCGTGCGCACGGCCCGTGTCGCAGCCGGCGGCCCGTGTTC
CAGCGACGCTGATTGTAGCGACGGCTACGCCTGCGCCGCAAGCAAGACGT
GCAACAAGGTGGTGAAGGATGTGTCATACTACGTGTGGACCAACGACTAC
TGCGAAGTGTTCATCAACGGACAGTATCAGGGATACGTGCCGACGGGCTT
TGGAGTTGTGCAGTTCAAGTACTCGGGCACTTGCGATGATATCATCATGA
AGGTGACCAACACGGGCGACTACATCTCTTCAGGCATCGTGATGAACTAC
GGTGGGTGGAACCATGGCAGCCAGGGCTTCCATCAAGCCCCGAATGGCAT
TGCCATTCCAATCTACGGACGCGCCAAACTGAGTCCGGAAGGCAACTTTA
CGAACAACGATCCATCGTATGATTACATGAGCTGGAATGAGGCCGTGTAC
GCGGTGGACATGGAGCAGACCGGAAACTTCCCCAAGTCAATGAAGGACGC
GGGCGCCGATCCGGTCACATCTGATGACGTTTACACTCCGGATGACACCG
TGATGGGCATTCGTTATGAATTCCCGGAATGCTATTCTTAA
back to top