Ggra1097.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1097.t1
Unique Name	Ggra1097.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000185_pilon	contig	tig00000185_pilon:194977..196221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1097	Ggra1097	Gracilaria gracilis GNS1m male	gene	tig00000185_pilon 194977..196221 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1097.t1.start1	Ggra1097.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000185_pilon 194977..194979 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1097.t1.CDS1	Ggra1097.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000185_pilon 194977..196221 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1097.t1.exon1	Ggra1097.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000185_pilon 194977..196221 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1097.t1.stop1	Ggra1097.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000185_pilon 196219..196221 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1097.t1	Ggra1097.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000185_pilon 194977..196221 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000185_pilon:194977..196221+
coding sequence from alignment at tig00000185_pilon:194977..196221+

mRNA sequence

>Ggra1097.t1 ID=Ggra1097.t1|Name=Ggra1097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=415bp
MKSNTEYEAIAESNAQPLPPNPVRRSSPWSFSSYGSRFVLLIMAVAALAF
VSVHRHDLSEWSRNRVFMPSRSILPLVPKTLSQVCQELDSGFSYGCWNSD
ADDTDLCKICRAGRFRTTLPTKYAIARTKQPSTPAKVVTNGMSHTQIMKI
PSSIRGALSDMCSQLDNGFSYGCWNSDASDTDLCKICRAGSFRMLTRNKV
GVTSEMQVKEDLMKLQSVDVSNTIRGVISDLCSELNNGFSYGCWNSDADD
TDLCKICRAGHFRTTLPTKYAIARTKQASTPAKVVTNGMSHTQIMKIPSS
IRGALSDLCSQLDNGFSYGCWNSDASDTDLCKICRAGSFRMLTRNKVGVT
SEMQVKEDLMKLQSVDVSNTIRGVLSDLCSELDNGFSYGCWNSDAVETDL
CKICRAGRFRLGVA*

spliced messenger RNA

>Ggra1097.t1 ID=Ggra1097.t1|Name=Ggra1097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000185_pilon:194977..196221+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCCAACACAGAGTACGAAGCCATCGCCGAATCGAACGCTCAGCC
GCTCCCTCCGAACCCGGTTAGACGCTCCTCACCATGGTCATTCTCCTCGT
ATGGATCTCGCTTCGTTCTTCTCATTATGGCTGTAGCTGCTTTGGCGTTC
GTGTCTGTTCATCGCCATGATCTATCCGAGTGGTCAAGGAATCGCGTATT
CATGCCGTCGCGCTCAATTCTTCCTTTGGTACCTAAAACGCTTTCCCAAG
TCTGCCAAGAACTGGACAGTGGTTTCAGCTACGGATGTTGGAACAGTGAT
GCGGATGACACCGACCTGTGTAAGATCTGCCGAGCAGGTCGCTTCCGTAC
TACTCTTCCAACCAAATACGCTATTGCTCGCACCAAACAGCCTTCTACAC
CTGCGAAGGTGGTTACGAATGGTATGTCTCACACGCAGATCATGAAGATA
CCTTCCTCTATTCGCGGAGCTCTTTCCGATATGTGCTCGCAACTGGATAA
CGGATTTAGCTACGGATGCTGGAACAGTGATGCTAGTGACACTGATCTTT
GTAAGATTTGTAGAGCCGGTAGCTTCCGTATGCTGACGCGAAACAAGGTT
GGTGTGACTTCGGAAATGCAGGTGAAAGAAGATTTAATGAAGCTGCAATC
TGTTGACGTTTCGAATACGATTCGCGGAGTTATATCCGACCTGTGCTCAG
AACTGAACAATGGTTTCAGCTACGGGTGCTGGAACAGTGATGCGGATGAC
ACCGATCTGTGCAAGATCTGCCGAGCAGGTCACTTCCGTACTACTCTTCC
AACCAAATACGCTATTGCTCGCACCAAACAGGCTTCTACACCTGCGAAGG
TGGTTACGAATGGTATGTCTCACACGCAGATCATGAAGATACCTTCCTCT
ATTCGCGGAGCTCTTTCGGATTTGTGCTCGCAACTGGATAACGGATTTAG
CTACGGATGCTGGAACAGTGATGCTAGTGACACTGATCTTTGCAAGATTT
GTAGAGCCGGTAGCTTCCGTATGCTGACGCGAAACAAGGTTGGCGTGACT
TCGGAAATGCAGGTGAAAGAAGATTTAATGAAGCTGCAATCTGTTGACGT
TTCGAATACGATTCGCGGAGTTCTATCCGACCTGTGCTCGGAACTGGACA
ATGGTTTCAGCTACGGGTGCTGGAACAGTGATGCGGTTGAGACCGACCTG
TGTAAGATCTGCCGAGCAGGTCGCTTTCGCCTAGGTGTGGCCTAA

protein sequence of Ggra1097.t1

>Ggra1097.t1 ID=Ggra1097.t1|Name=Ggra1097.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=415bp
MKSNTEYEAIAESNAQPLPPNPVRRSSPWSFSSYGSRFVLLIMAVAALAF
VSVHRHDLSEWSRNRVFMPSRSILPLVPKTLSQVCQELDSGFSYGCWNSD
ADDTDLCKICRAGRFRTTLPTKYAIARTKQPSTPAKVVTNGMSHTQIMKI
PSSIRGALSDMCSQLDNGFSYGCWNSDASDTDLCKICRAGSFRMLTRNKV
GVTSEMQVKEDLMKLQSVDVSNTIRGVISDLCSELNNGFSYGCWNSDADD
TDLCKICRAGHFRTTLPTKYAIARTKQASTPAKVVTNGMSHTQIMKIPSS
IRGALSDLCSQLDNGFSYGCWNSDASDTDLCKICRAGSFRMLTRNKVGVT
SEMQVKEDLMKLQSVDVSNTIRGVLSDLCSELDNGFSYGCWNSDAVETDL
CKICRAGRFRLGVA*

mRNA from alignment at tig00000185_pilon:194977..196221+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1097.t1 ID=Ggra1097.t1|Name=Ggra1097.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000185_pilon:194977..196221+ (Gracilaria gracilis GNS1m male)
ATGAAATCCAACACAGAGTACGAAGCCATCGCCGAATCGAACGCTCAGCC
GCTCCCTCCGAACCCGGTTAGACGCTCCTCACCATGGTCATTCTCCTCGT
ATGGATCTCGCTTCGTTCTTCTCATTATGGCTGTAGCTGCTTTGGCGTTC
GTGTCTGTTCATCGCCATGATCTATCCGAGTGGTCAAGGAATCGCGTATT
CATGCCGTCGCGCTCAATTCTTCCTTTGGTACCTAAAACGCTTTCCCAAG
TCTGCCAAGAACTGGACAGTGGTTTCAGCTACGGATGTTGGAACAGTGAT
GCGGATGACACCGACCTGTGTAAGATCTGCCGAGCAGGTCGCTTCCGTAC
TACTCTTCCAACCAAATACGCTATTGCTCGCACCAAACAGCCTTCTACAC
CTGCGAAGGTGGTTACGAATGGTATGTCTCACACGCAGATCATGAAGATA
CCTTCCTCTATTCGCGGAGCTCTTTCCGATATGTGCTCGCAACTGGATAA
CGGATTTAGCTACGGATGCTGGAACAGTGATGCTAGTGACACTGATCTTT
GTAAGATTTGTAGAGCCGGTAGCTTCCGTATGCTGACGCGAAACAAGGTT
GGTGTGACTTCGGAAATGCAGGTGAAAGAAGATTTAATGAAGCTGCAATC
TGTTGACGTTTCGAATACGATTCGCGGAGTTATATCCGACCTGTGCTCAG
AACTGAACAATGGTTTCAGCTACGGGTGCTGGAACAGTGATGCGGATGAC
ACCGATCTGTGCAAGATCTGCCGAGCAGGTCACTTCCGTACTACTCTTCC
AACCAAATACGCTATTGCTCGCACCAAACAGGCTTCTACACCTGCGAAGG
TGGTTACGAATGGTATGTCTCACACGCAGATCATGAAGATACCTTCCTCT
ATTCGCGGAGCTCTTTCGGATTTGTGCTCGCAACTGGATAACGGATTTAG
CTACGGATGCTGGAACAGTGATGCTAGTGACACTGATCTTTGCAAGATTT
GTAGAGCCGGTAGCTTCCGTATGCTGACGCGAAACAAGGTTGGCGTGACT
TCGGAAATGCAGGTGAAAGAAGATTTAATGAAGCTGCAATCTGTTGACGT
TTCGAATACGATTCGCGGAGTTCTATCCGACCTGTGCTCGGAACTGGACA
ATGGTTTCAGCTACGGGTGCTGGAACAGTGATGCGGTTGAGACCGACCTG
TGTAAGATCTGCCGAGCAGGTCGCTTTCGCCTAGGTGTGGCCTAA

Coding sequence (CDS) from alignment at tig00000185_pilon:194977..196221+

>Ggra1097.t1 ID=Ggra1097.t1|Name=Ggra1097.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00000185_pilon:194977..196221+ (Gracilaria gracilis GNS1m male)
ATGAAATCCAACACAGAGTACGAAGCCATCGCCGAATCGAACGCTCAGCC
GCTCCCTCCGAACCCGGTTAGACGCTCCTCACCATGGTCATTCTCCTCGT
ATGGATCTCGCTTCGTTCTTCTCATTATGGCTGTAGCTGCTTTGGCGTTC
GTGTCTGTTCATCGCCATGATCTATCCGAGTGGTCAAGGAATCGCGTATT
CATGCCGTCGCGCTCAATTCTTCCTTTGGTACCTAAAACGCTTTCCCAAG
TCTGCCAAGAACTGGACAGTGGTTTCAGCTACGGATGTTGGAACAGTGAT
GCGGATGACACCGACCTGTGTAAGATCTGCCGAGCAGGTCGCTTCCGTAC
TACTCTTCCAACCAAATACGCTATTGCTCGCACCAAACAGCCTTCTACAC
CTGCGAAGGTGGTTACGAATGGTATGTCTCACACGCAGATCATGAAGATA
CCTTCCTCTATTCGCGGAGCTCTTTCCGATATGTGCTCGCAACTGGATAA
CGGATTTAGCTACGGATGCTGGAACAGTGATGCTAGTGACACTGATCTTT
GTAAGATTTGTAGAGCCGGTAGCTTCCGTATGCTGACGCGAAACAAGGTT
GGTGTGACTTCGGAAATGCAGGTGAAAGAAGATTTAATGAAGCTGCAATC
TGTTGACGTTTCGAATACGATTCGCGGAGTTATATCCGACCTGTGCTCAG
AACTGAACAATGGTTTCAGCTACGGGTGCTGGAACAGTGATGCGGATGAC
ACCGATCTGTGCAAGATCTGCCGAGCAGGTCACTTCCGTACTACTCTTCC
AACCAAATACGCTATTGCTCGCACCAAACAGGCTTCTACACCTGCGAAGG
TGGTTACGAATGGTATGTCTCACACGCAGATCATGAAGATACCTTCCTCT
ATTCGCGGAGCTCTTTCGGATTTGTGCTCGCAACTGGATAACGGATTTAG
CTACGGATGCTGGAACAGTGATGCTAGTGACACTGATCTTTGCAAGATTT
GTAGAGCCGGTAGCTTCCGTATGCTGACGCGAAACAAGGTTGGCGTGACT
TCGGAAATGCAGGTGAAAGAAGATTTAATGAAGCTGCAATCTGTTGACGT
TTCGAATACGATTCGCGGAGTTCTATCCGACCTGTGCTCGGAACTGGACA
ATGGTTTCAGCTACGGGTGCTGGAACAGTGATGCGGTTGAGACCGACCTG
TGTAAGATCTGCCGAGCAGGTCGCTTTCGCCTAGGTGTGGCCTAA