Ggra10967.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10967.t1
Unique NameGgra10967.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length593
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:120270..122048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML194CT
PFAMsAICARFT_IMPCHas,MGS
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
GOsGO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.27e-228
EggNOG OGsCOG0138@1|root,KOG2555@2759|Eukaryota
EC2.1.2.3,3.5.4.10
DescriptionIMP cyclohydrolase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10967Ggra10967Gracilaria gracilis GNS1m malegenetig00000938_pilon 120270..122048 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10967.t1.stop1Ggra10967.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 120270..120272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10967.t1.CDS1Ggra10967.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 120270..122048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10967.t1.exon1Ggra10967.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 120270..122048 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10967.t1.start1Ggra10967.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 122046..122048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10967.t1Ggra10967.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 120270..122048 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10967.t1 ID=Ggra10967.t1|Name=Ggra10967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp
MTVAFAGPLSLRSPLLRRSSAAAALCAPAAAPRRRAPRHASFVMCAEPTP
TTTPVSPTPSPTQQTPRLVPIKRALISVSNKNSLIALAQVLVEAGVQILS
TGGTFRTLQEADIPVTGVSEYTGFPEIMGGRVKTLHPRIHGALLAVRDDE
QHLAAMDEHGIDPIDLVVVNLYPFEETVAQGKPFDDCVENIDIGGPSMIR
AAAKNCKYVTVVTDVTQYTDIIAELEEHNGKTSYELRCRLAAAAFAKMAA
YDSAVASKFASEIGIPFPEKVLLSASRKQILRYGENPHQKAAFYISNKSS
PGVATAEQVQGKDLSYNNLSDTDAAFELVSEFVGGDPVCAIIKHANPCGV
ASGVTAQDAYLRALACDPVSAFGGIVALNVTVDLRVAEEIAKMFIEVVIA
PDATAEALALLASKKNLRVLLTGSMPDPKSEGLTVKSVSGGLLLQTRDNG
SKMADDLTVASKREPTEDEMKNLLFAWKVCKHVKSNAIVYVKDMATVGTG
AGQMSRVDASRIAAWKAEEASSNAQEEKSRTIGSVVASDAFFPFADGLIA
AADAGATAVIQPGGSKRDAEVIAAADEKGIALVMTGMRHFRH*
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spliced messenger RNA

>Ggra10967.t1 ID=Ggra10967.t1|Name=Ggra10967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000938_pilon:120270..122048- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCGCTTTTGCCGGCCCGCTGTCGCTGCGCTCGCCTTTGCTGCG
CCGCTCTTCCGCCGCCGCCGCGCTTTGTGCTCCTGCCGCTGCGCCGCGCC
GTCGCGCCCCGCGCCACGCCTCGTTCGTCATGTGTGCTGAGCCGACGCCT
ACCACCACTCCCGTGTCGCCTACCCCGTCCCCCACGCAGCAGACGCCGCG
CTTGGTGCCAATCAAGCGCGCGCTTATCTCCGTTTCGAATAAGAACTCTT
TGATTGCACTGGCGCAGGTGCTGGTGGAGGCCGGTGTCCAAATTCTGTCC
ACGGGCGGTACCTTCCGCACTTTGCAGGAGGCAGACATTCCGGTCACGGG
CGTTTCGGAGTACACGGGATTCCCAGAGATCATGGGTGGCCGTGTCAAGA
CTCTGCACCCCAGGATTCATGGCGCTTTGCTTGCGGTTCGCGATGATGAG
CAGCATCTTGCCGCAATGGACGAGCACGGTATCGATCCCATTGATCTCGT
CGTCGTCAATTTGTACCCGTTTGAGGAGACGGTTGCGCAAGGAAAGCCTT
TCGATGACTGTGTCGAAAACATTGATATCGGCGGCCCTTCCATGATTCGC
GCTGCCGCCAAGAACTGCAAGTACGTCACCGTCGTCACCGACGTCACTCA
ATACACCGACATCATAGCCGAACTTGAGGAGCACAACGGAAAAACTTCAT
ATGAGCTTCGCTGTCGACTAGCTGCTGCAGCGTTTGCCAAGATGGCGGCG
TACGACTCGGCTGTCGCCTCCAAGTTTGCGTCCGAGATTGGTATCCCGTT
CCCCGAAAAAGTTTTGCTCTCTGCGTCGCGCAAGCAGATACTGCGCTACG
GCGAGAATCCTCATCAGAAGGCAGCGTTTTACATCTCGAACAAATCGTCA
CCGGGCGTGGCAACAGCGGAGCAAGTTCAAGGAAAAGATCTCAGCTACAA
CAATTTGTCTGATACCGATGCAGCATTTGAGCTCGTGTCTGAGTTTGTGG
GAGGTGACCCCGTGTGCGCCATTATCAAGCATGCTAATCCATGCGGTGTT
GCTTCTGGCGTAACGGCTCAGGACGCATACCTGAGGGCCTTAGCGTGCGA
TCCGGTGTCTGCATTTGGAGGTATTGTGGCACTAAATGTCACTGTAGACT
TGCGAGTTGCGGAAGAAATAGCCAAGATGTTCATCGAGGTTGTCATTGCT
CCGGATGCAACTGCAGAAGCACTCGCGTTGCTTGCGTCCAAGAAAAATCT
CCGAGTACTACTAACTGGTTCGATGCCAGATCCTAAGAGTGAGGGTCTCA
CCGTCAAGTCTGTTTCTGGCGGACTTCTCTTGCAGACTCGAGACAATGGT
TCGAAGATGGCGGACGACTTGACTGTCGCGTCCAAACGCGAACCTACAGA
GGATGAGATGAAGAACCTGCTTTTCGCGTGGAAGGTTTGCAAACACGTTA
AGTCTAATGCTATTGTTTACGTAAAAGATATGGCAACGGTTGGAACAGGG
GCGGGGCAAATGAGCCGCGTGGATGCGTCCCGTATTGCAGCTTGGAAAGC
TGAAGAAGCGTCGTCCAATGCTCAAGAAGAGAAAAGTAGAACTATAGGCA
GTGTGGTCGCCTCCGATGCTTTCTTCCCATTTGCGGATGGTCTCATTGCC
GCAGCAGATGCGGGAGCTACCGCGGTAATCCAACCTGGTGGATCGAAGAG
GGATGCAGAGGTGATTGCTGCCGCGGATGAAAAAGGAATTGCTCTTGTCA
TGACCGGGATGCGCCATTTCAGGCATTAG
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protein sequence of Ggra10967.t1

>Ggra10967.t1 ID=Ggra10967.t1|Name=Ggra10967.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=593bp
MTVAFAGPLSLRSPLLRRSSAAAALCAPAAAPRRRAPRHASFVMCAEPTP
TTTPVSPTPSPTQQTPRLVPIKRALISVSNKNSLIALAQVLVEAGVQILS
TGGTFRTLQEADIPVTGVSEYTGFPEIMGGRVKTLHPRIHGALLAVRDDE
QHLAAMDEHGIDPIDLVVVNLYPFEETVAQGKPFDDCVENIDIGGPSMIR
AAAKNCKYVTVVTDVTQYTDIIAELEEHNGKTSYELRCRLAAAAFAKMAA
YDSAVASKFASEIGIPFPEKVLLSASRKQILRYGENPHQKAAFYISNKSS
PGVATAEQVQGKDLSYNNLSDTDAAFELVSEFVGGDPVCAIIKHANPCGV
ASGVTAQDAYLRALACDPVSAFGGIVALNVTVDLRVAEEIAKMFIEVVIA
PDATAEALALLASKKNLRVLLTGSMPDPKSEGLTVKSVSGGLLLQTRDNG
SKMADDLTVASKREPTEDEMKNLLFAWKVCKHVKSNAIVYVKDMATVGTG
AGQMSRVDASRIAAWKAEEASSNAQEEKSRTIGSVVASDAFFPFADGLIA
AADAGATAVIQPGGSKRDAEVIAAADEKGIALVMTGMRHFRH*
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mRNA from alignment at tig00000938_pilon:120270..122048-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10967.t1 ID=Ggra10967.t1|Name=Ggra10967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000938_pilon:120270..122048- (Gracilaria gracilis GNS1m male)
ATGACGGTCGCTTTTGCCGGCCCGCTGTCGCTGCGCTCGCCTTTGCTGCG
CCGCTCTTCCGCCGCCGCCGCGCTTTGTGCTCCTGCCGCTGCGCCGCGCC
GTCGCGCCCCGCGCCACGCCTCGTTCGTCATGTGTGCTGAGCCGACGCCT
ACCACCACTCCCGTGTCGCCTACCCCGTCCCCCACGCAGCAGACGCCGCG
CTTGGTGCCAATCAAGCGCGCGCTTATCTCCGTTTCGAATAAGAACTCTT
TGATTGCACTGGCGCAGGTGCTGGTGGAGGCCGGTGTCCAAATTCTGTCC
ACGGGCGGTACCTTCCGCACTTTGCAGGAGGCAGACATTCCGGTCACGGG
CGTTTCGGAGTACACGGGATTCCCAGAGATCATGGGTGGCCGTGTCAAGA
CTCTGCACCCCAGGATTCATGGCGCTTTGCTTGCGGTTCGCGATGATGAG
CAGCATCTTGCCGCAATGGACGAGCACGGTATCGATCCCATTGATCTCGT
CGTCGTCAATTTGTACCCGTTTGAGGAGACGGTTGCGCAAGGAAAGCCTT
TCGATGACTGTGTCGAAAACATTGATATCGGCGGCCCTTCCATGATTCGC
GCTGCCGCCAAGAACTGCAAGTACGTCACCGTCGTCACCGACGTCACTCA
ATACACCGACATCATAGCCGAACTTGAGGAGCACAACGGAAAAACTTCAT
ATGAGCTTCGCTGTCGACTAGCTGCTGCAGCGTTTGCCAAGATGGCGGCG
TACGACTCGGCTGTCGCCTCCAAGTTTGCGTCCGAGATTGGTATCCCGTT
CCCCGAAAAAGTTTTGCTCTCTGCGTCGCGCAAGCAGATACTGCGCTACG
GCGAGAATCCTCATCAGAAGGCAGCGTTTTACATCTCGAACAAATCGTCA
CCGGGCGTGGCAACAGCGGAGCAAGTTCAAGGAAAAGATCTCAGCTACAA
CAATTTGTCTGATACCGATGCAGCATTTGAGCTCGTGTCTGAGTTTGTGG
GAGGTGACCCCGTGTGCGCCATTATCAAGCATGCTAATCCATGCGGTGTT
GCTTCTGGCGTAACGGCTCAGGACGCATACCTGAGGGCCTTAGCGTGCGA
TCCGGTGTCTGCATTTGGAGGTATTGTGGCACTAAATGTCACTGTAGACT
TGCGAGTTGCGGAAGAAATAGCCAAGATGTTCATCGAGGTTGTCATTGCT
CCGGATGCAACTGCAGAAGCACTCGCGTTGCTTGCGTCCAAGAAAAATCT
CCGAGTACTACTAACTGGTTCGATGCCAGATCCTAAGAGTGAGGGTCTCA
CCGTCAAGTCTGTTTCTGGCGGACTTCTCTTGCAGACTCGAGACAATGGT
TCGAAGATGGCGGACGACTTGACTGTCGCGTCCAAACGCGAACCTACAGA
GGATGAGATGAAGAACCTGCTTTTCGCGTGGAAGGTTTGCAAACACGTTA
AGTCTAATGCTATTGTTTACGTAAAAGATATGGCAACGGTTGGAACAGGG
GCGGGGCAAATGAGCCGCGTGGATGCGTCCCGTATTGCAGCTTGGAAAGC
TGAAGAAGCGTCGTCCAATGCTCAAGAAGAGAAAAGTAGAACTATAGGCA
GTGTGGTCGCCTCCGATGCTTTCTTCCCATTTGCGGATGGTCTCATTGCC
GCAGCAGATGCGGGAGCTACCGCGGTAATCCAACCTGGTGGATCGAAGAG
GGATGCAGAGGTGATTGCTGCCGCGGATGAAAAAGGAATTGCTCTTGTCA
TGACCGGGATGCGCCATTTCAGGCATTAG
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Coding sequence (CDS) from alignment at tig00000938_pilon:120270..122048-

>Ggra10967.t1 ID=Ggra10967.t1|Name=Ggra10967.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00000938_pilon:120270..122048- (Gracilaria gracilis GNS1m male)
ATGACGGTCGCTTTTGCCGGCCCGCTGTCGCTGCGCTCGCCTTTGCTGCG
CCGCTCTTCCGCCGCCGCCGCGCTTTGTGCTCCTGCCGCTGCGCCGCGCC
GTCGCGCCCCGCGCCACGCCTCGTTCGTCATGTGTGCTGAGCCGACGCCT
ACCACCACTCCCGTGTCGCCTACCCCGTCCCCCACGCAGCAGACGCCGCG
CTTGGTGCCAATCAAGCGCGCGCTTATCTCCGTTTCGAATAAGAACTCTT
TGATTGCACTGGCGCAGGTGCTGGTGGAGGCCGGTGTCCAAATTCTGTCC
ACGGGCGGTACCTTCCGCACTTTGCAGGAGGCAGACATTCCGGTCACGGG
CGTTTCGGAGTACACGGGATTCCCAGAGATCATGGGTGGCCGTGTCAAGA
CTCTGCACCCCAGGATTCATGGCGCTTTGCTTGCGGTTCGCGATGATGAG
CAGCATCTTGCCGCAATGGACGAGCACGGTATCGATCCCATTGATCTCGT
CGTCGTCAATTTGTACCCGTTTGAGGAGACGGTTGCGCAAGGAAAGCCTT
TCGATGACTGTGTCGAAAACATTGATATCGGCGGCCCTTCCATGATTCGC
GCTGCCGCCAAGAACTGCAAGTACGTCACCGTCGTCACCGACGTCACTCA
ATACACCGACATCATAGCCGAACTTGAGGAGCACAACGGAAAAACTTCAT
ATGAGCTTCGCTGTCGACTAGCTGCTGCAGCGTTTGCCAAGATGGCGGCG
TACGACTCGGCTGTCGCCTCCAAGTTTGCGTCCGAGATTGGTATCCCGTT
CCCCGAAAAAGTTTTGCTCTCTGCGTCGCGCAAGCAGATACTGCGCTACG
GCGAGAATCCTCATCAGAAGGCAGCGTTTTACATCTCGAACAAATCGTCA
CCGGGCGTGGCAACAGCGGAGCAAGTTCAAGGAAAAGATCTCAGCTACAA
CAATTTGTCTGATACCGATGCAGCATTTGAGCTCGTGTCTGAGTTTGTGG
GAGGTGACCCCGTGTGCGCCATTATCAAGCATGCTAATCCATGCGGTGTT
GCTTCTGGCGTAACGGCTCAGGACGCATACCTGAGGGCCTTAGCGTGCGA
TCCGGTGTCTGCATTTGGAGGTATTGTGGCACTAAATGTCACTGTAGACT
TGCGAGTTGCGGAAGAAATAGCCAAGATGTTCATCGAGGTTGTCATTGCT
CCGGATGCAACTGCAGAAGCACTCGCGTTGCTTGCGTCCAAGAAAAATCT
CCGAGTACTACTAACTGGTTCGATGCCAGATCCTAAGAGTGAGGGTCTCA
CCGTCAAGTCTGTTTCTGGCGGACTTCTCTTGCAGACTCGAGACAATGGT
TCGAAGATGGCGGACGACTTGACTGTCGCGTCCAAACGCGAACCTACAGA
GGATGAGATGAAGAACCTGCTTTTCGCGTGGAAGGTTTGCAAACACGTTA
AGTCTAATGCTATTGTTTACGTAAAAGATATGGCAACGGTTGGAACAGGG
GCGGGGCAAATGAGCCGCGTGGATGCGTCCCGTATTGCAGCTTGGAAAGC
TGAAGAAGCGTCGTCCAATGCTCAAGAAGAGAAAAGTAGAACTATAGGCA
GTGTGGTCGCCTCCGATGCTTTCTTCCCATTTGCGGATGGTCTCATTGCC
GCAGCAGATGCGGGAGCTACCGCGGTAATCCAACCTGGTGGATCGAAGAG
GGATGCAGAGGTGATTGCTGCCGCGGATGAAAAAGGAATTGCTCTTGTCA
TGACCGGGATGCGCCATTTCAGGCATTAG
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