Ggra10966.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10966.t1
Unique Name	Ggra10966.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000938_pilon	contig	tig00000938_pilon:118291..119898 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10966	Ggra10966	Gracilaria gracilis GNS1m male	gene	tig00000938_pilon 118291..119898 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10966.t1.start1	Ggra10966.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000938_pilon 118291..118293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10966.t1.CDS1	Ggra10966.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000938_pilon 118291..119898 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10966.t1.exon1	Ggra10966.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000938_pilon 118291..119898 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10966.t1.stop1	Ggra10966.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000938_pilon 119896..119898 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10966.t1	Ggra10966.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000938_pilon 118291..119898 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000938_pilon:118291..119898+
coding sequence from alignment at tig00000938_pilon:118291..119898+

mRNA sequence

>Ggra10966.t1 ID=Ggra10966.t1|Name=Ggra10966.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp
MGDDFTAQLLKGFERRADAAKKQVEQRARRAAEHRQRLKKEQEQAEKERL
GAEVDQMMARANQRVSAKRKKRKKRPLAAKTAASASSSAAAKPPAKPRTP
VPRHKVNEMRTNYRAPPKRAAPGKVPKLGPNMEFVVRREKKKKQIRVPHT
YDYSDMFGDDYWRGIDIDGAKKISKETAEATKEAQEIIAEREAQREKNKR
DREENIREVRELERKGLWDEKTQNKRRLEQSEKAWVAVDTPVPIFRQKNS
AVSRAAQSSSSASRLPTKSFGRPGSSSSALPTKKESAAQIQERARLFKER
LMGLTSSNTKKSSTPKTPKGKSSSGSDSDANRRPSLNSKKRTPLKRRILD
SEDSESEDDRRGKKRRRRASEDSDSDRAYRSAKRMRRTRVYSDESDSDHG
RKSGSSKRKRRARDDSDDSDYEDRRRSWKKGRRARDDSDDSEDDRRRSRR
SRKSSGSGKKPRSGRQGYISDEWSNSDGVEDSDEEDLFDISALDREEARS
ERLAKLEDKRELAKLRQDRKDKARRRQEFEERHGG*

spliced messenger RNA

>Ggra10966.t1 ID=Ggra10966.t1|Name=Ggra10966.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000938_pilon:118291..119898+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACGACTTCACCGCGCAGCTGCTCAAGGGCTTTGAGCGCCGCGC
CGACGCCGCGAAGAAGCAGGTGGAGCAGCGCGCACGCCGCGCCGCCGAGC
ACCGCCAACGCCTGAAGAAAGAGCAAGAACAGGCAGAGAAGGAACGTCTG
GGCGCCGAAGTCGACCAAATGATGGCGCGTGCCAACCAAAGAGTGTCCGC
CAAACGGAAGAAGCGTAAGAAGAGGCCTCTGGCTGCCAAAACCGCCGCTT
CGGCCTCTTCGTCTGCCGCCGCCAAGCCACCTGCCAAGCCGAGAACGCCG
GTTCCGAGGCACAAAGTCAATGAGATGCGCACCAACTACCGCGCTCCGCC
GAAGCGCGCTGCCCCTGGCAAGGTGCCCAAGCTGGGACCCAACATGGAAT
TCGTTGTTCGCCGCGAGAAAAAGAAGAAGCAGATTCGCGTGCCGCACACG
TACGACTATTCCGACATGTTTGGCGACGATTATTGGCGCGGCATTGACAT
AGACGGCGCGAAAAAGATATCCAAGGAAACCGCCGAAGCCACCAAGGAGG
CGCAGGAAATCATTGCTGAGCGCGAAGCCCAGCGAGAGAAGAATAAGCGC
GATCGAGAGGAAAACATCCGCGAGGTTCGTGAACTGGAGAGGAAAGGACT
CTGGGATGAGAAAACCCAGAACAAGAGGCGACTGGAGCAATCAGAGAAGG
CATGGGTAGCTGTTGACACCCCTGTGCCTATCTTCCGCCAGAAGAACTCC
GCCGTATCACGCGCAGCACAGTCCTCGTCTTCTGCCTCCAGGCTACCGAC
AAAGTCCTTCGGTAGGCCTGGTTCTTCTTCTTCTGCACTACCCACGAAAA
AGGAAAGTGCGGCTCAGATTCAAGAGCGCGCTCGTCTTTTCAAGGAACGT
CTCATGGGCCTCACCTCTTCGAACACCAAGAAGTCTTCAACCCCCAAGAC
TCCTAAGGGCAAGAGTAGCTCCGGTTCAGACTCTGATGCGAACCGTAGAC
CTTCGTTGAACAGCAAGAAACGAACTCCGCTAAAGCGCCGTATCTTGGAC
TCTGAAGACTCGGAGAGCGAAGACGATCGTCGTGGCAAAAAAAGGAGGCG
ACGAGCTAGCGAAGACTCGGATTCCGACCGCGCGTATCGAAGCGCGAAGA
GAATGCGCCGAACCCGAGTGTACAGCGACGAATCTGACTCTGATCACGGC
CGAAAATCTGGAAGCTCGAAAAGGAAGCGTCGTGCTCGGGACGATAGCGA
TGACTCGGACTACGAAGACCGACGCCGAAGCTGGAAGAAGGGTCGTCGGG
CTCGTGACGACAGCGACGATTCCGAAGACGATCGTCGACGCAGTCGACGC
AGTCGAAAGTCTTCTGGAAGCGGAAAGAAGCCCCGCTCAGGTCGTCAGGG
CTATATCAGCGATGAGTGGAGCAACTCAGACGGTGTTGAAGACTCTGACG
AGGAAGATCTGTTTGACATTTCCGCACTTGATCGGGAGGAGGCCAGAAGC
GAACGCCTTGCGAAGTTGGAAGACAAGAGAGAACTCGCGAAGCTTCGCCA
AGACAGGAAAGATAAGGCGCGAAGGCGCCAGGAATTTGAAGAACGGCACG
GCGGCTAA

protein sequence of Ggra10966.t1

>Ggra10966.t1 ID=Ggra10966.t1|Name=Ggra10966.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MGDDFTAQLLKGFERRADAAKKQVEQRARRAAEHRQRLKKEQEQAEKERL
GAEVDQMMARANQRVSAKRKKRKKRPLAAKTAASASSSAAAKPPAKPRTP
VPRHKVNEMRTNYRAPPKRAAPGKVPKLGPNMEFVVRREKKKKQIRVPHT
YDYSDMFGDDYWRGIDIDGAKKISKETAEATKEAQEIIAEREAQREKNKR
DREENIREVRELERKGLWDEKTQNKRRLEQSEKAWVAVDTPVPIFRQKNS
AVSRAAQSSSSASRLPTKSFGRPGSSSSALPTKKESAAQIQERARLFKER
LMGLTSSNTKKSSTPKTPKGKSSSGSDSDANRRPSLNSKKRTPLKRRILD
SEDSESEDDRRGKKRRRRASEDSDSDRAYRSAKRMRRTRVYSDESDSDHG
RKSGSSKRKRRARDDSDDSDYEDRRRSWKKGRRARDDSDDSEDDRRRSRR
SRKSSGSGKKPRSGRQGYISDEWSNSDGVEDSDEEDLFDISALDREEARS
ERLAKLEDKRELAKLRQDRKDKARRRQEFEERHGG*

mRNA from alignment at tig00000938_pilon:118291..119898+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10966.t1 ID=Ggra10966.t1|Name=Ggra10966.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000938_pilon:118291..119898+ (Gracilaria gracilis GNS1m male)
ATGGGCGACGACTTCACCGCGCAGCTGCTCAAGGGCTTTGAGCGCCGCGC
CGACGCCGCGAAGAAGCAGGTGGAGCAGCGCGCACGCCGCGCCGCCGAGC
ACCGCCAACGCCTGAAGAAAGAGCAAGAACAGGCAGAGAAGGAACGTCTG
GGCGCCGAAGTCGACCAAATGATGGCGCGTGCCAACCAAAGAGTGTCCGC
CAAACGGAAGAAGCGTAAGAAGAGGCCTCTGGCTGCCAAAACCGCCGCTT
CGGCCTCTTCGTCTGCCGCCGCCAAGCCACCTGCCAAGCCGAGAACGCCG
GTTCCGAGGCACAAAGTCAATGAGATGCGCACCAACTACCGCGCTCCGCC
GAAGCGCGCTGCCCCTGGCAAGGTGCCCAAGCTGGGACCCAACATGGAAT
TCGTTGTTCGCCGCGAGAAAAAGAAGAAGCAGATTCGCGTGCCGCACACG
TACGACTATTCCGACATGTTTGGCGACGATTATTGGCGCGGCATTGACAT
AGACGGCGCGAAAAAGATATCCAAGGAAACCGCCGAAGCCACCAAGGAGG
CGCAGGAAATCATTGCTGAGCGCGAAGCCCAGCGAGAGAAGAATAAGCGC
GATCGAGAGGAAAACATCCGCGAGGTTCGTGAACTGGAGAGGAAAGGACT
CTGGGATGAGAAAACCCAGAACAAGAGGCGACTGGAGCAATCAGAGAAGG
CATGGGTAGCTGTTGACACCCCTGTGCCTATCTTCCGCCAGAAGAACTCC
GCCGTATCACGCGCAGCACAGTCCTCGTCTTCTGCCTCCAGGCTACCGAC
AAAGTCCTTCGGTAGGCCTGGTTCTTCTTCTTCTGCACTACCCACGAAAA
AGGAAAGTGCGGCTCAGATTCAAGAGCGCGCTCGTCTTTTCAAGGAACGT
CTCATGGGCCTCACCTCTTCGAACACCAAGAAGTCTTCAACCCCCAAGAC
TCCTAAGGGCAAGAGTAGCTCCGGTTCAGACTCTGATGCGAACCGTAGAC
CTTCGTTGAACAGCAAGAAACGAACTCCGCTAAAGCGCCGTATCTTGGAC
TCTGAAGACTCGGAGAGCGAAGACGATCGTCGTGGCAAAAAAAGGAGGCG
ACGAGCTAGCGAAGACTCGGATTCCGACCGCGCGTATCGAAGCGCGAAGA
GAATGCGCCGAACCCGAGTGTACAGCGACGAATCTGACTCTGATCACGGC
CGAAAATCTGGAAGCTCGAAAAGGAAGCGTCGTGCTCGGGACGATAGCGA
TGACTCGGACTACGAAGACCGACGCCGAAGCTGGAAGAAGGGTCGTCGGG
CTCGTGACGACAGCGACGATTCCGAAGACGATCGTCGACGCAGTCGACGC
AGTCGAAAGTCTTCTGGAAGCGGAAAGAAGCCCCGCTCAGGTCGTCAGGG
CTATATCAGCGATGAGTGGAGCAACTCAGACGGTGTTGAAGACTCTGACG
AGGAAGATCTGTTTGACATTTCCGCACTTGATCGGGAGGAGGCCAGAAGC
GAACGCCTTGCGAAGTTGGAAGACAAGAGAGAACTCGCGAAGCTTCGCCA
AGACAGGAAAGATAAGGCGCGAAGGCGCCAGGAATTTGAAGAACGGCACG
GCGGCTAA

Coding sequence (CDS) from alignment at tig00000938_pilon:118291..119898+

>Ggra10966.t1 ID=Ggra10966.t1|Name=Ggra10966.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000938_pilon:118291..119898+ (Gracilaria gracilis GNS1m male)
ATGGGCGACGACTTCACCGCGCAGCTGCTCAAGGGCTTTGAGCGCCGCGC
CGACGCCGCGAAGAAGCAGGTGGAGCAGCGCGCACGCCGCGCCGCCGAGC
ACCGCCAACGCCTGAAGAAAGAGCAAGAACAGGCAGAGAAGGAACGTCTG
GGCGCCGAAGTCGACCAAATGATGGCGCGTGCCAACCAAAGAGTGTCCGC
CAAACGGAAGAAGCGTAAGAAGAGGCCTCTGGCTGCCAAAACCGCCGCTT
CGGCCTCTTCGTCTGCCGCCGCCAAGCCACCTGCCAAGCCGAGAACGCCG
GTTCCGAGGCACAAAGTCAATGAGATGCGCACCAACTACCGCGCTCCGCC
GAAGCGCGCTGCCCCTGGCAAGGTGCCCAAGCTGGGACCCAACATGGAAT
TCGTTGTTCGCCGCGAGAAAAAGAAGAAGCAGATTCGCGTGCCGCACACG
TACGACTATTCCGACATGTTTGGCGACGATTATTGGCGCGGCATTGACAT
AGACGGCGCGAAAAAGATATCCAAGGAAACCGCCGAAGCCACCAAGGAGG
CGCAGGAAATCATTGCTGAGCGCGAAGCCCAGCGAGAGAAGAATAAGCGC
GATCGAGAGGAAAACATCCGCGAGGTTCGTGAACTGGAGAGGAAAGGACT
CTGGGATGAGAAAACCCAGAACAAGAGGCGACTGGAGCAATCAGAGAAGG
CATGGGTAGCTGTTGACACCCCTGTGCCTATCTTCCGCCAGAAGAACTCC
GCCGTATCACGCGCAGCACAGTCCTCGTCTTCTGCCTCCAGGCTACCGAC
AAAGTCCTTCGGTAGGCCTGGTTCTTCTTCTTCTGCACTACCCACGAAAA
AGGAAAGTGCGGCTCAGATTCAAGAGCGCGCTCGTCTTTTCAAGGAACGT
CTCATGGGCCTCACCTCTTCGAACACCAAGAAGTCTTCAACCCCCAAGAC
TCCTAAGGGCAAGAGTAGCTCCGGTTCAGACTCTGATGCGAACCGTAGAC
CTTCGTTGAACAGCAAGAAACGAACTCCGCTAAAGCGCCGTATCTTGGAC
TCTGAAGACTCGGAGAGCGAAGACGATCGTCGTGGCAAAAAAAGGAGGCG
ACGAGCTAGCGAAGACTCGGATTCCGACCGCGCGTATCGAAGCGCGAAGA
GAATGCGCCGAACCCGAGTGTACAGCGACGAATCTGACTCTGATCACGGC
CGAAAATCTGGAAGCTCGAAAAGGAAGCGTCGTGCTCGGGACGATAGCGA
TGACTCGGACTACGAAGACCGACGCCGAAGCTGGAAGAAGGGTCGTCGGG
CTCGTGACGACAGCGACGATTCCGAAGACGATCGTCGACGCAGTCGACGC
AGTCGAAAGTCTTCTGGAAGCGGAAAGAAGCCCCGCTCAGGTCGTCAGGG
CTATATCAGCGATGAGTGGAGCAACTCAGACGGTGTTGAAGACTCTGACG
AGGAAGATCTGTTTGACATTTCCGCACTTGATCGGGAGGAGGCCAGAAGC
GAACGCCTTGCGAAGTTGGAAGACAAGAGAGAACTCGCGAAGCTTCGCCA
AGACAGGAAAGATAAGGCGCGAAGGCGCCAGGAATTTGAAGAACGGCACG
GCGGCTAA