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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7G851 |
PFAMs | TerC |
Max annot lvl | 2759|Eukaryota |
GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007275,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009791,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0055035,GO:0061024,GO:0071840,GO:0090351 |
Evalue | 1.92e-64 |
EggNOG OGs | COG0861@1|root,2QQNF@2759|Eukaryota |
Description | membrane protein TERC |
COG category | P |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10964.t1.stop1 | Ggra10964.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000938_pilon 112127..112129 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10964.t1.start1 | Ggra10964.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000938_pilon 115960..115962 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10964.t1 ID=Ggra10964.t1|Name=Ggra10964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=682bp MNRAAFVARARSRPRVPATSPVVAKLDPSPASSEPTPASPPSAREEGAAL SASPPASQLDSVPPAAEPASVSAPPEREQVPTLSARSPDSVPHHAHHAHH FAGEPRRLADDVRVTLTFVSLALGVCALFYHNNAESGLEFLTAYIIEYAL SVDNLLVFLLIFDYFAVPRAFQSRVLTYGLTGAVAMRGIFIYFGEALTHR FKPVSLVFAAILVFSAIQLLFSSDEEEEDLSNNAVVKFSKSVLPVTDQYN ADRFFSSFKGKTVATPLLLVLLVIEISDLIFALDSVPAVLGVSERTAVIY VSNVCAVLGLRSLYFILADSLADLRFLQPALAIVLGFIGAKMSASVFGYQ IPVPLSLGYLRVLLLLVTAHSTNMDSRIVLSTLSPTVATFMSLLEDPYRE STPADVFNSLKSQFLQPVLPQVSTHRLLRASDLQQLQRAILIARSQRRRL KAVTNASCTRAQAALASGAYVLDVSGLCRHSQSRNVLTAQCGTPLSHIFA AYEMATQAPLGRVRSVGGAVATGVLGGCATDSLLADSCVQISVIDSLGRL RVYSASQGGPMFNAIRLSLGAFGVIYDASFSVDKLRRYVKVRTSFHLQRS LFARGAAALQRRLRDAVGVEVVWWPFNSYKPRKRWRAEEDVVWLRVLKQA HRPKSEQLDCQQHHNGVNSTTTLIVIDYVAG* back to topspliced messenger RNA >Ggra10964.t1 ID=Ggra10964.t1|Name=Ggra10964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2046bp|location=Sequence derived from alignment at tig00000938_pilon:112127..115962- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAATCGCGCCGCCTTCGTCGCCCGCGCTCGCTCGCGGCCGCGCGTGCC CGCCACGTCGCCCGTCGTGGCGAAGCTGGATCCGTCGCCCGCTTCGTCCG AGCCCACGCCGGCTTCGCCGCCCTCCGCGCGCGAGGAGGGCGCTGCGCTG TCCGCATCGCCGCCTGCGTCGCAGCTCGACTCGGTGCCGCCTGCCGCAGA GCCTGCGTCCGTTTCGGCGCCGCCAGAGCGCGAGCAAGTGCCCACTCTGT CCGCGCGTTCGCCTGATTCGGTGCCGCACCATGCGCACCATGCGCACCAC TTTGCTGGCGAGCCGCGCAGGTTGGCGGATGACGTGCGCGTGACGTTGAC GTTTGTGTCGTTGGCGCTTGGCGTTTGCGCCTTGTTCTATCACAACAATG CAGAGTCGGGGCTGGAGTTTCTCACTGCCTATATTATCGAATACGCGCTC TCGGTGGACAACTTGCTTGTGTTTCTGCTCATTTTTGACTACTTTGCTGT CCCACGTGCCTTCCAGTCGCGCGTGCTGACGTACGGGCTCACCGGTGCTG TCGCCATGCGTGGCATCTTCATCTACTTTGGCGAAGCTCTTACGCACCGA TTCAAGCCGGTTTCGCTGGTTTTTGCCGCCATTTTGGTGTTTTCTGCCAT TCAGCTGCTCTTTTCCTCGGACGAAGAAGAAGAAGATCTTTCCAACAATG CAGTGGTCAAGTTTTCAAAGTCCGTGCTGCCCGTCACCGACCAGTACAAT GCTGATCGATTCTTCTCATCCTTCAAAGGCAAAACCGTGGCCACGCCGCT GCTGCTGGTGCTGCTGGTGATCGAGATTTCAGACCTCATCTTCGCGCTCG ACTCGGTACCAGCCGTTCTGGGAGTATCTGAGAGAACCGCCGTCATCTAC GTGTCCAATGTTTGCGCTGTGCTTGGGCTTCGTAGTCTTTATTTTATACT TGCCGATTCTCTTGCTGATCTTCGCTTTCTGCAGCCCGCGCTCGCCATCG TTTTGGGCTTCATAGGCGCCAAGATGAGCGCTTCCGTGTTTGGCTATCAA ATTCCAGTGCCGCTAAGCCTAGGCTATCTGCGAGTATTGCTTCTGCTGGT TACCGCACACAGCACAAACATGGATTCGCGTATCGTGCTTTCTACTTTGT CTCCTACTGTGGCAACGTTCATGTCGCTGTTGGAGGACCCGTACCGCGAG AGCACGCCAGCAGACGTGTTCAACTCACTCAAGTCACAGTTTCTACAGCC CGTGCTTCCACAAGTGTCAACGCACCGTCTGCTACGCGCATCGGATCTGC AACAGCTTCAGCGAGCAATCCTGATAGCTCGCTCACAACGGCGTCGGCTC AAAGCGGTGACAAACGCGTCGTGCACACGCGCTCAAGCGGCGCTCGCCTC CGGCGCATATGTGCTGGACGTATCCGGGCTGTGCCGGCACTCCCAGAGCA GAAACGTGCTCACAGCGCAGTGTGGCACGCCGCTGTCGCACATATTCGCG GCTTATGAGATGGCGACGCAGGCGCCTCTGGGGCGTGTGCGCAGCGTGGG CGGCGCAGTGGCGACGGGGGTGCTGGGCGGATGTGCGACCGACTCGCTGC TGGCCGACTCGTGCGTGCAGATCAGTGTGATTGATTCGTTGGGGCGACTG CGCGTGTACTCGGCGTCACAGGGTGGACCCATGTTCAACGCGATTCGGCT GTCGCTGGGGGCGTTTGGCGTGATCTACGACGCGTCGTTCAGCGTGGACA AGCTGCGGCGGTACGTGAAGGTGCGCACGTCATTCCACCTGCAGCGATCG CTGTTCGCGAGAGGGGCGGCCGCGCTGCAGCGGCGACTGCGCGACGCCGT GGGCGTGGAAGTGGTGTGGTGGCCGTTCAACTCGTACAAGCCGCGCAAAC GGTGGCGCGCCGAGGAGGACGTGGTGTGGCTGCGCGTGCTGAAGCAGGCG CACAGGCCCAAGTCGGAGCAGCTGGACTGTCAACAGCACCACAACGGTGT CAACAGCACCACCACGTTGATTGTGATTGATTACGTCGCCGGCTAA back to topprotein sequence of Ggra10964.t1 >Ggra10964.t1 ID=Ggra10964.t1|Name=Ggra10964.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=682bp
MNRAAFVARARSRPRVPATSPVVAKLDPSPASSEPTPASPPSAREEGAAL SASPPASQLDSVPPAAEPASVSAPPEREQVPTLSARSPDSVPHHAHHAHH FAGEPRRLADDVRVTLTFVSLALGVCALFYHNNAESGLEFLTAYIIEYAL SVDNLLVFLLIFDYFAVPRAFQSRVLTYGLTGAVAMRGIFIYFGEALTHR FKPVSLVFAAILVFSAIQLLFSSDEEEEDLSNNAVVKFSKSVLPVTDQYN ADRFFSSFKGKTVATPLLLVLLVIEISDLIFALDSVPAVLGVSERTAVIY VSNVCAVLGLRSLYFILADSLADLRFLQPALAIVLGFIGAKMSASVFGYQ IPVPLSLGYLRVLLLLVTAHSTNMDSRIVLSTLSPTVATFMSLLEDPYRE STPADVFNSLKSQFLQPVLPQVSTHRLLRASDLQQLQRAILIARSQRRRL KAVTNASCTRAQAALASGAYVLDVSGLCRHSQSRNVLTAQCGTPLSHIFA AYEMATQAPLGRVRSVGGAVATGVLGGCATDSLLADSCVQISVIDSLGRL RVYSASQGGPMFNAIRLSLGAFGVIYDASFSVDKLRRYVKVRTSFHLQRS LFARGAAALQRRLRDAVGVEVVWWPFNSYKPRKRWRAEEDVVWLRVLKQA HRPKSEQLDCQQHHNGVNSTTTLIVIDYVAG* back to topmRNA from alignment at tig00000938_pilon:112127..115962- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10964.t1 ID=Ggra10964.t1|Name=Ggra10964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3836bp|location=Sequence derived from alignment at tig00000938_pilon:112127..115962- (Gracilaria gracilis GNS1m male) ATGAATCGCGCCGCCTTCGTCGCCGTACCGCCCTCCACCGCCGCCTCTCG
CGGCCGCGCGTTAAACTGCGGCCGCGGCGCGCAGTCGCCGTGCGCATGCG
CGCCGCCGCTCGCCGCGCGCCGCTGCGCGTTCGTGGCGCGCTCACGGCCG
CTGCTGCTCTCGACGTGGAAGCGCGCTCGCTCGCGGCCGCGCGTGCCCGC
CACGTCGCCCGTCGTGGCGAAGCTGGATCCGTCGCCCGCTTCGTCCGAGC
CCACGCCGGCTTCGCCGCCCTCCGCGCGCGAGGAGGGCGCTGCGCTGTCC
GCATCGCCGCCTGCGTCGCAGCTCGACTCGGTGCCGCCTGCCGCAGAGCC
TGCGTCCGTTTCGGCGCCGCCAGAGCGCGAGCAAGTGCCCACTCTGTCCG
CGCGTTCGCCTGATTCGGTGCCGCACCATGCGCACCATGCGCACCACTTT
GCTGGCGAGCCGCGCAGGTTGGCGGATGACGTGCGCGTGACGTTGACGTT
TGTGTCGTTGGCGCTTGGCGTTTGCGCCTTGTTCTATCACAACAATGCAG
AGTCGGGGCTGGAGTTTCTCACTGCCTATATTATCGAATACGCGCTCTCG
GTGGACAACTTGCTTGTGTTTCTGCTCATTTTTGACTACTTTGCTGTCCC
ACGTGCCTTCCAGTCGCGCGTGCTGACGTACGGGCTCACCGGTGCTGTCG
CCATGCGTGGCATCTTCATCTACTTTGGCGAAGCTCTTACGCACCGATTC
AAGCCGGTTTCGCTGGTTTTTGCCGCCATTTTGGTGTTTTCTGCCATTCA
GCTGCTCTTTTCCTCGGACGAAGAAGAAGAAGATCTTTCCAACAATGCAG
TGGTCAAGTTTTCAAAGTCCGTGCTGCCCGTCACCGACCAGTACAATGCT
GATCGATTCTTCTCATCCTTCAAAGGCAAAACCGTGGCCACGCCGCTGCT
GCTGGTGCTGCTGGTGATCGAGATTTCAGACCTCATCTTCGCGCTCGACT
CGGTACCAGCCGTTCTGGGAGTATCTGAGAGAACCGCCGTCATCTACGTG
TCCAATGTTTGCGCTGTGCTTGGGCTTCGTAGTCTTTATTTTATACTTGC
CGATTCTCTTGCTGATCTTCGCTTTCTGCAGCCCGCGCTCGCCATCGTTT
TGGGCTTCATAGGCGCCAAGATGAGCGCTTCCGTGTTTGGCTATCAAATT
CCAGTGCCGCTAAGCCTGTCCGTTGTGGTTGCAACGCTTTCAACAGGAGT
AGTCGCCAGTTTACTCTTCCCATCCGATCAGTCCGCCTAAAATGTTCACG
GCCCAGCACACTGCACAGCTGACACAAGCCAATTAATTTTGTCCCAACCA
CAGTATCCCTTCACCCATAGCTTATCACTGCTTGCTTTTGTGACTCCCTT
CATCGCTTCCGCCTCCTCTTTCCACGCCGCTATACTTTTCACATATTGCA
GAGGCTATCTGCGAGTATTGCTTCTGCTGGTTACCGCACACAGCACAAAC
ATGGATTCGCGTATCGTGCTTTCTACTTTGTCTCCTACTGTGGCAACGTT
CATGTCGCTGTTGGAGGACCCGTACCGCGAGAGCACGCCAGCAGACGTGT
TCAACTCACTCAAGTCACAGTTTCTACAGCCCGTGCTTCCACAAGTGTCA
ACGCACCGTCTGCTACGCGCATCGGATCTGCAACAGCTTCAGCGAGCAAT
CCTGATAGCTCGCTCACAACGGCGTCGGCTCAAAGCGGTGACAAACGCGT
CGTGCACACGCGCTCAAGCGGCGCTCGCCTCCGGCGCATATGTGCTGGAC
GTATCCGGGCTGTGCCGGCACTCCCAGAGCAGAAACGTGCTCACAGCGCA
GTGTGGCACGCCGCTGTCGCACATATTCGCGGCTTATGAGATGGCGACGC
AGGCGCCTCTGGGGCGTGTGCGCAGCGTGGGCGGCGCAGTGGCGACGGGG
GTGCTGGGCGGATGTGCGACCGACTCGCTGCTGGCCGACTCGTGCGTGCA
GATCAGTGTGATTGATTCGTTGGGGCGACTGCGCGTGTACTCGGCGTCAC
AGGGTGGACCCATGTTCAACGCGATTCGGCTGTCGCTGGGGGCGTTTGGC
GTGATCTACGACGCGTCGTTCAGCGTGGACAAGCTGCGGCGGTACGTGAA
GGTGCGCACGTCATTCCACCTGCAGCGATCGCTGTTCGCGAGAGGGGCGG
CCGCGCTGCAGCGGCGACTGCGCGACGCCGTGGGCGTGGAAGTGGTGTGG
TGGCCGTTCAACTCGTACAAGCCGCGCAAACGGTGGCGCGCCGAGGAGGA
CGTGGTGTGGCTGCGCGTGCTGAAGCAGGCGCACAGGCCCAAGTCGGAGC
AGCTGGACGTGTGCTACGCGGTGCCGACAATGGCGCAGTGGCTGTTCCGA
CACGCCAAGCCGCTGGCCAAGGCGGGCTACAGCGGCTTCCACGCGCGCCA
CACGCCGGCGTTCCAGCGCGCGGCGTTCGCGGACACGGCGTGGAAGCTGG
ACGGACTGCGACTGACCACCAGCGTGCACCACGCGGTGCACCAGGTGCAG
ACGGAGGCGGCGGGCATGAGCGAGGTGAGCGTGTGCGTGCCGCTGCGGCG
CGACGCGGACTGGCACGCGCTGACGCGCGCGTGGCACGACGCAGTGGCGG
CGGCCGAGCACGCGGCCACCCGCGGCCACTTTCCGCTCAACGGCGCGCTG
CGGCTGCGCTTCGTGACGCGCAGCGCGGCGCTGCTGGCGCCCAACGGCGG
CGCCAAGTGCAGCGCGGTGCTGAGCGCCAGCTCGGCGGCCGGCACGGCGG
GCTGGGCGGCGTTCGGCGCCACGGTGGCGGCCAGGTGGATGCGCGTGGGC
GGCGCGCGCTGGGTGCTGTCGCGCGAGGCGCGCGCGCTGCTAAGCGCCGA
CGTGGTGCGGCGCAGCCTCGGCGACGACCTGCGCCTGTTCCGCGCGCTGT
ACCAGAGCAGCGGCGCGGACGACTACGGCATGTTTGGCGACGACGTGCTG
GCGGACGTGCTGCACGTGGCGCGGCGGCTGGCGGCGGCGCCGACGGAGGC
GACGGCGGCGCCGAAGGAGGCGGCGCGATCGGCGAGGAGCTGCCACTTGC
TGCATGAAATGCGCGTCGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAA
GAGCCGGTGGCGGCTAAGCGCGACGGCGCGCAGCGACTGCTGCGGCGGCG
CAGCAGCCGGCGGCTCGAGCGCAAGGCGGCGACGGCGCGGCGCGAGTGGC
GCTACGTGCTCACGTACGTGGCGCTGTACGCGCTTCTGTGGGTGCTGCTG
TTCGGGCGCGACGCGGCGGTGGCCGTGGCGGCGCAGTACACGCGCGAGCG
CCCCAGATTGTAATAAGCTGTACAGCGTGTACAGCGTGTACAGCAGGTAC
AGCGCGTGTTTGTATGTACGTGTACGGCGTGTACGATTGTAAGCGGCCGA
CGGCCGCAGCGGGCGGCGCATCCTAAGCTTTACATTCCCAGATTTTGTGG
AGATACGCGGCGGCGCTTTGATGACAGCCGTGTGTTTGCGTGCGAGCGGT
CGAGCAGCTGTCACGGTGCGCTTACACATTGCGCAAGCGGTAAGCGGTAA
GCGGTAAGCGGCTCTCCACGCCGCGCGCAAGTGGAAGCGGCACTATGCGC
TGACGTGGCCGCTTTTGGCGCGCTCGTGCGCGGAGAGCGCGCGCGCGGTG
TAACCGACGTGTGTGAAAACGCGGCAGGCCACGCGCGCGAGTCAAGTTGA
CACTGTCAAGTTGACAGTGTCAACAGCACCACAACGGTGTCAACAGCACC
ACCACGTTGATTGTGATTGATTACGTCGCCGGCTAA back to topCoding sequence (CDS) from alignment at tig00000938_pilon:112127..115962- >Ggra10964.t1 ID=Ggra10964.t1|Name=Ggra10964.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2046bp|location=Sequence derived from alignment at tig00000938_pilon:112127..115962- (Gracilaria gracilis GNS1m male) ATGAATCGCGCCGCCTTCGTCGCCCGCGCTCGCTCGCGGCCGCGCGTGCC CGCCACGTCGCCCGTCGTGGCGAAGCTGGATCCGTCGCCCGCTTCGTCCG AGCCCACGCCGGCTTCGCCGCCCTCCGCGCGCGAGGAGGGCGCTGCGCTG TCCGCATCGCCGCCTGCGTCGCAGCTCGACTCGGTGCCGCCTGCCGCAGA GCCTGCGTCCGTTTCGGCGCCGCCAGAGCGCGAGCAAGTGCCCACTCTGT CCGCGCGTTCGCCTGATTCGGTGCCGCACCATGCGCACCATGCGCACCAC TTTGCTGGCGAGCCGCGCAGGTTGGCGGATGACGTGCGCGTGACGTTGAC GTTTGTGTCGTTGGCGCTTGGCGTTTGCGCCTTGTTCTATCACAACAATG CAGAGTCGGGGCTGGAGTTTCTCACTGCCTATATTATCGAATACGCGCTC TCGGTGGACAACTTGCTTGTGTTTCTGCTCATTTTTGACTACTTTGCTGT CCCACGTGCCTTCCAGTCGCGCGTGCTGACGTACGGGCTCACCGGTGCTG TCGCCATGCGTGGCATCTTCATCTACTTTGGCGAAGCTCTTACGCACCGA TTCAAGCCGGTTTCGCTGGTTTTTGCCGCCATTTTGGTGTTTTCTGCCAT TCAGCTGCTCTTTTCCTCGGACGAAGAAGAAGAAGATCTTTCCAACAATG CAGTGGTCAAGTTTTCAAAGTCCGTGCTGCCCGTCACCGACCAGTACAAT GCTGATCGATTCTTCTCATCCTTCAAAGGCAAAACCGTGGCCACGCCGCT GCTGCTGGTGCTGCTGGTGATCGAGATTTCAGACCTCATCTTCGCGCTCG ACTCGGTACCAGCCGTTCTGGGAGTATCTGAGAGAACCGCCGTCATCTAC GTGTCCAATGTTTGCGCTGTGCTTGGGCTTCGTAGTCTTTATTTTATACT TGCCGATTCTCTTGCTGATCTTCGCTTTCTGCAGCCCGCGCTCGCCATCG TTTTGGGCTTCATAGGCGCCAAGATGAGCGCTTCCGTGTTTGGCTATCAA ATTCCAGTGCCGCTAAGCCTAGGCTATCTGCGAGTATTGCTTCTGCTGGT TACCGCACACAGCACAAACATGGATTCGCGTATCGTGCTTTCTACTTTGT CTCCTACTGTGGCAACGTTCATGTCGCTGTTGGAGGACCCGTACCGCGAG AGCACGCCAGCAGACGTGTTCAACTCACTCAAGTCACAGTTTCTACAGCC CGTGCTTCCACAAGTGTCAACGCACCGTCTGCTACGCGCATCGGATCTGC AACAGCTTCAGCGAGCAATCCTGATAGCTCGCTCACAACGGCGTCGGCTC AAAGCGGTGACAAACGCGTCGTGCACACGCGCTCAAGCGGCGCTCGCCTC CGGCGCATATGTGCTGGACGTATCCGGGCTGTGCCGGCACTCCCAGAGCA GAAACGTGCTCACAGCGCAGTGTGGCACGCCGCTGTCGCACATATTCGCG GCTTATGAGATGGCGACGCAGGCGCCTCTGGGGCGTGTGCGCAGCGTGGG CGGCGCAGTGGCGACGGGGGTGCTGGGCGGATGTGCGACCGACTCGCTGC TGGCCGACTCGTGCGTGCAGATCAGTGTGATTGATTCGTTGGGGCGACTG CGCGTGTACTCGGCGTCACAGGGTGGACCCATGTTCAACGCGATTCGGCT GTCGCTGGGGGCGTTTGGCGTGATCTACGACGCGTCGTTCAGCGTGGACA AGCTGCGGCGGTACGTGAAGGTGCGCACGTCATTCCACCTGCAGCGATCG CTGTTCGCGAGAGGGGCGGCCGCGCTGCAGCGGCGACTGCGCGACGCCGT GGGCGTGGAAGTGGTGTGGTGGCCGTTCAACTCGTACAAGCCGCGCAAAC GGTGGCGCGCCGAGGAGGACGTGGTGTGGCTGCGCGTGCTGAAGCAGGCG CACAGGCCCAAGTCGGAGCAGCTGGACTGTCAACAGCACCACAACGGTGT CAACAGCACCACCACGTTGATTGTGATTGATTACGTCGCCGGCTAA back to top
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