Ggra10963.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10963.t1
Unique NameGgra10963.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:111289..111945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702385.1
Preferred nameEDC3
PFAMsEdc3_linker,FDF,LSM14,YjeF_N
Max annot lvl2759|Eukaryota
KEGG koko:K12615,ko:K17758,ko:K17759
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000288,GO:0000291,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009117,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010494,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016853,GO:0016854,GO:0016891,GO:0016893,GO:0019219,GO:0019222,GO:0019362,GO:0019439,GO:0019637,GO:0019674,GO:0022607,GO:0022613,GO:0022618,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0046483,GO:0046496,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0052856,GO:0052857,GO:0055086,GO:0060255,GO:0061013,GO:0061014,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072524,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1903311,GO:1903313,GO:1990174,GO:1990904
Evalue5.54e-53
EggNOG OGsCOG0062@1|root,KOG2585@2759|Eukaryota
EC4.2.1.136,5.1.99.6
DescriptionNADPHX epimerase activity
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10963Ggra10963Gracilaria gracilis GNS1m malegenetig00000938_pilon 111289..111945 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10963.t1.start1Ggra10963.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 111289..111291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10963.t1.CDS1Ggra10963.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 111289..111945 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10963.t1.exon1Ggra10963.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 111289..111945 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10963.t1.stop1Ggra10963.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 111943..111945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10963.t1Ggra10963.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 111289..111945 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10963.t1 ID=Ggra10963.t1|Name=Ggra10963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MSEQYGHSLEQLMELAGLSVAHAVAESVRDKQSAIVVACGPGNNGGDGLV
AARHLFHFGYHNIVVWLPKASTRQPFVSLQTQLHALQIAVKVGEYGALGE
ADVIVDAIFGFSFDGAHGVREPYGAAIAQINDAAQAQRISVDVPSGWHVE
RGDVWGDAAIATPHVLVSLSAPKPCARLLEQRGGAHFIGGRFLPPALCDE
LRLRAVHYDGTRCVTRVT*
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spliced messenger RNA

>Ggra10963.t1 ID=Ggra10963.t1|Name=Ggra10963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000938_pilon:111289..111945+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGCAGTACGGACACTCGCTGGAGCAGCTGATGGAACTGGCCGG
GCTGTCCGTGGCGCACGCGGTGGCAGAAAGCGTGCGCGACAAACAGAGCG
CCATAGTGGTGGCATGCGGGCCGGGGAACAACGGCGGCGACGGGTTAGTA
GCGGCGCGGCATCTGTTTCACTTTGGGTACCACAACATAGTGGTATGGCT
ACCAAAAGCGAGCACGCGGCAGCCGTTTGTATCGCTGCAGACGCAGCTAC
ACGCGTTGCAAATCGCAGTGAAAGTGGGCGAGTACGGCGCGCTAGGCGAG
GCGGACGTGATCGTGGACGCCATCTTCGGCTTCTCGTTCGACGGCGCGCA
CGGCGTACGCGAGCCGTACGGCGCGGCGATCGCGCAAATCAACGATGCGG
CACAGGCGCAGCGCATCTCGGTGGACGTGCCCAGCGGGTGGCACGTGGAG
CGAGGCGACGTGTGGGGGGACGCAGCTATCGCGACGCCGCACGTGCTGGT
GTCGCTGAGCGCGCCCAAGCCGTGCGCGCGGCTGCTGGAGCAGCGCGGCG
GCGCGCACTTCATCGGCGGACGCTTCCTGCCGCCCGCGCTGTGCGACGAG
CTGCGGCTGCGCGCGGTACACTACGACGGCACGCGCTGCGTAACGCGGGT
GACGTGA
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protein sequence of Ggra10963.t1

>Ggra10963.t1 ID=Ggra10963.t1|Name=Ggra10963.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MSEQYGHSLEQLMELAGLSVAHAVAESVRDKQSAIVVACGPGNNGGDGLV
AARHLFHFGYHNIVVWLPKASTRQPFVSLQTQLHALQIAVKVGEYGALGE
ADVIVDAIFGFSFDGAHGVREPYGAAIAQINDAAQAQRISVDVPSGWHVE
RGDVWGDAAIATPHVLVSLSAPKPCARLLEQRGGAHFIGGRFLPPALCDE
LRLRAVHYDGTRCVTRVT*
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mRNA from alignment at tig00000938_pilon:111289..111945+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10963.t1 ID=Ggra10963.t1|Name=Ggra10963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000938_pilon:111289..111945+ (Gracilaria gracilis GNS1m male)
ATGTCCGAGCAGTACGGACACTCGCTGGAGCAGCTGATGGAACTGGCCGG
GCTGTCCGTGGCGCACGCGGTGGCAGAAAGCGTGCGCGACAAACAGAGCG
CCATAGTGGTGGCATGCGGGCCGGGGAACAACGGCGGCGACGGGTTAGTA
GCGGCGCGGCATCTGTTTCACTTTGGGTACCACAACATAGTGGTATGGCT
ACCAAAAGCGAGCACGCGGCAGCCGTTTGTATCGCTGCAGACGCAGCTAC
ACGCGTTGCAAATCGCAGTGAAAGTGGGCGAGTACGGCGCGCTAGGCGAG
GCGGACGTGATCGTGGACGCCATCTTCGGCTTCTCGTTCGACGGCGCGCA
CGGCGTACGCGAGCCGTACGGCGCGGCGATCGCGCAAATCAACGATGCGG
CACAGGCGCAGCGCATCTCGGTGGACGTGCCCAGCGGGTGGCACGTGGAG
CGAGGCGACGTGTGGGGGGACGCAGCTATCGCGACGCCGCACGTGCTGGT
GTCGCTGAGCGCGCCCAAGCCGTGCGCGCGGCTGCTGGAGCAGCGCGGCG
GCGCGCACTTCATCGGCGGACGCTTCCTGCCGCCCGCGCTGTGCGACGAG
CTGCGGCTGCGCGCGGTACACTACGACGGCACGCGCTGCGTAACGCGGGT
GACGTGA
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Coding sequence (CDS) from alignment at tig00000938_pilon:111289..111945+

>Ggra10963.t1 ID=Ggra10963.t1|Name=Ggra10963.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000938_pilon:111289..111945+ (Gracilaria gracilis GNS1m male)
ATGTCCGAGCAGTACGGACACTCGCTGGAGCAGCTGATGGAACTGGCCGG
GCTGTCCGTGGCGCACGCGGTGGCAGAAAGCGTGCGCGACAAACAGAGCG
CCATAGTGGTGGCATGCGGGCCGGGGAACAACGGCGGCGACGGGTTAGTA
GCGGCGCGGCATCTGTTTCACTTTGGGTACCACAACATAGTGGTATGGCT
ACCAAAAGCGAGCACGCGGCAGCCGTTTGTATCGCTGCAGACGCAGCTAC
ACGCGTTGCAAATCGCAGTGAAAGTGGGCGAGTACGGCGCGCTAGGCGAG
GCGGACGTGATCGTGGACGCCATCTTCGGCTTCTCGTTCGACGGCGCGCA
CGGCGTACGCGAGCCGTACGGCGCGGCGATCGCGCAAATCAACGATGCGG
CACAGGCGCAGCGCATCTCGGTGGACGTGCCCAGCGGGTGGCACGTGGAG
CGAGGCGACGTGTGGGGGGACGCAGCTATCGCGACGCCGCACGTGCTGGT
GTCGCTGAGCGCGCCCAAGCCGTGCGCGCGGCTGCTGGAGCAGCGCGGCG
GCGCGCACTTCATCGGCGGACGCTTCCTGCCGCCCGCGCTGTGCGACGAG
CTGCGGCTGCGCGCGGTACACTACGACGGCACGCGCTGCGTAACGCGGGT
GACGTGA
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