Ggra10962.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10962.t1
Unique NameGgra10962.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:110352..110740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13349.G1XE75
Preferred nameRPS21
PFAMsRibosomal_S21e
Max annot lvl4751|Fungi
KEGG koko:K02971
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0002182,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006414,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0031123,GO:0031125,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.8e-33
EggNOG OGsKOG3486@1|root,KOG3486@2759|Eukaryota,3A5Y0@33154|Opisthokonta,3P5CA@4751|Fungi,3QWHI@4890|Ascomycota
DescriptionRequired for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10962Ggra10962Gracilaria gracilis GNS1m malegenetig00000938_pilon 110352..110740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10962.t1Ggra10962.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 110352..110740 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10962.t1.stop1Ggra10962.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 110352..110354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10962.t1.CDS1Ggra10962.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 110352..110550 -
Ggra10962.t1.CDS2Ggra10962.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000938_pilon 110691..110740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10962.t1.exon1Ggra10962.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 110352..110550 -
Ggra10962.t1.exon2Ggra10962.t1.exon2Gracilaria gracilis GNS1m maleexontig00000938_pilon 110691..110740 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10962.t1.intron1Ggra10962.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000938_pilon 110551..110690 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10962.t1.start1Ggra10962.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 110738..110740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MQNDKGEVVDLYIPRKCSASNRLITAKDHASVQINIARVDENGVATGEHD
TIAICGYVRRKGLSDDAFYRIAREKGFYQSTK*
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spliced messenger RNA

>Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000938_pilon:110352..110740- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAACGACAAGGGAGAGGTCGTCGACCTTTACATTCCGCGAAAATG
CTCCGCGTCAAACCGCCTCATCACCGCAAAGGACCACGCCTCCGTGCAGA
TCAACATCGCCCGCGTCGATGAGAACGGTGTCGCCACCGGCGAGCACGAC
ACCATTGCCATCTGCGGCTACGTTCGACGCAAGGGTCTCAGCGACGACGC
CTTCTACCGCATCGCTAGAGAGAAGGGTTTCTACCAATCCACAAAGTGA
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protein sequence of Ggra10962.t1

>Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MQNDKGEVVDLYIPRKCSASNRLITAKDHASVQINIARVDENGVATGEHD
TIAICGYVRRKGLSDDAFYRIAREKGFYQSTK*
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mRNA from alignment at tig00000938_pilon:110352..110740-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp|location=Sequence derived from alignment at tig00000938_pilon:110352..110740- (Gracilaria gracilis GNS1m male)
ATGCAGAACGACAAGGGAGAGGTCGTCGACCTTTACATTCCGCGAAAATG GTGCGTTGCCCGTTCGTCGCATCCCACCGCCGTGCCACAAACCCTTTTGC CGTCACTTCGAATGCTAACCGTGTGTTTCACTTCTCCCCTTCGCCCAACG CTGTTCAAAACCAAACACCCAAACTCTTACTTGAAAACAGCTCCGCGTCA AACCGCCTCATCACCGCAAAGGACCACGCCTCCGTGCAGATCAACATCGC CCGCGTCGATGAGAACGGTGTCGCCACCGGCGAGCACGACACCATTGCCA TCTGCGGCTACGTTCGACGCAAGGGTCTCAGCGACGACGCCTTCTACCGC ATCGCTAGAGAGAAGGGTTTCTACCAATCCACAAAGTGA
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Coding sequence (CDS) from alignment at tig00000938_pilon:110352..110740-

>Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000938_pilon:110352..110740- (Gracilaria gracilis GNS1m male)
ATGCAGAACGACAAGGGAGAGGTCGTCGACCTTTACATTCCGCGAAAATG
CTCCGCGTCAAACCGCCTCATCACCGCAAAGGACCACGCCTCCGTGCAGA
TCAACATCGCCCGCGTCGATGAGAACGGTGTCGCCACCGGCGAGCACGAC
ACCATTGCCATCTGCGGCTACGTTCGACGCAAGGGTCTCAGCGACGACGC
CTTCTACCGCATCGCTAGAGAGAAGGGTTTCTACCAATCCACAAAGTGA
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