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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 13349.G1XE75 |
Preferred name | RPS21 |
PFAMs | Ribosomal_S21e |
Max annot lvl | 4751|Fungi |
KEGG ko | ko:K02971 |
KEGG Pathway | ko03010,map03010 |
KEGG Module | M00177 |
GOs | GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0002182,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006414,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0031123,GO:0031125,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904 |
Evalue | 6.8e-33 |
EggNOG OGs | KOG3486@1|root,KOG3486@2759|Eukaryota,3A5Y0@33154|Opisthokonta,3P5CA@4751|Fungi,3QWHI@4890|Ascomycota |
Description | Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability |
COG category | J |
BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10962.t1.stop1 | Ggra10962.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000938_pilon 110352..110354 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10962.t1.intron1 | Ggra10962.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000938_pilon 110551..110690 - |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10962.t1.start1 | Ggra10962.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000938_pilon 110738..110740 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp MQNDKGEVVDLYIPRKCSASNRLITAKDHASVQINIARVDENGVATGEHD TIAICGYVRRKGLSDDAFYRIAREKGFYQSTK* back to topspliced messenger RNA >Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000938_pilon:110352..110740- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGAACGACAAGGGAGAGGTCGTCGACCTTTACATTCCGCGAAAATG CTCCGCGTCAAACCGCCTCATCACCGCAAAGGACCACGCCTCCGTGCAGA TCAACATCGCCCGCGTCGATGAGAACGGTGTCGCCACCGGCGAGCACGAC ACCATTGCCATCTGCGGCTACGTTCGACGCAAGGGTCTCAGCGACGACGC CTTCTACCGCATCGCTAGAGAGAAGGGTTTCTACCAATCCACAAAGTGA back to topprotein sequence of Ggra10962.t1 >Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MQNDKGEVVDLYIPRKCSASNRLITAKDHASVQINIARVDENGVATGEHD TIAICGYVRRKGLSDDAFYRIAREKGFYQSTK* back to topmRNA from alignment at tig00000938_pilon:110352..110740- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp|location=Sequence derived from alignment at tig00000938_pilon:110352..110740- (Gracilaria gracilis GNS1m male) ATGCAGAACGACAAGGGAGAGGTCGTCGACCTTTACATTCCGCGAAAATG
GTGCGTTGCCCGTTCGTCGCATCCCACCGCCGTGCCACAAACCCTTTTGC
CGTCACTTCGAATGCTAACCGTGTGTTTCACTTCTCCCCTTCGCCCAACG
CTGTTCAAAACCAAACACCCAAACTCTTACTTGAAAACAGCTCCGCGTCA
AACCGCCTCATCACCGCAAAGGACCACGCCTCCGTGCAGATCAACATCGC
CCGCGTCGATGAGAACGGTGTCGCCACCGGCGAGCACGACACCATTGCCA
TCTGCGGCTACGTTCGACGCAAGGGTCTCAGCGACGACGCCTTCTACCGC
ATCGCTAGAGAGAAGGGTTTCTACCAATCCACAAAGTGA back to topCoding sequence (CDS) from alignment at tig00000938_pilon:110352..110740- >Ggra10962.t1 ID=Ggra10962.t1|Name=Ggra10962.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000938_pilon:110352..110740- (Gracilaria gracilis GNS1m male) ATGCAGAACGACAAGGGAGAGGTCGTCGACCTTTACATTCCGCGAAAATG CTCCGCGTCAAACCGCCTCATCACCGCAAAGGACCACGCCTCCGTGCAGA TCAACATCGCCCGCGTCGATGAGAACGGTGTCGCCACCGGCGAGCACGAC ACCATTGCCATCTGCGGCTACGTTCGACGCAAGGGTCTCAGCGACGACGC CTTCTACCGCATCGCTAGAGAGAAGGGTTTCTACCAATCCACAAAGTGA back to top
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