Ggra10961.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10961.t1
Unique NameGgra10961.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:108983..109990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706306.1
PFAMsPP2C
Max annot lvl2759|Eukaryota
KEGG koko:K01090,ko:K19704
KEGG Pathwayko04011,map04011
GOsGO:0000001,GO:0000173,GO:0000188,GO:0000394,GO:0000749,GO:0000750,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006464,GO:0006469,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007186,GO:0007231,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009628,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019236,GO:0019538,GO:0023051,GO:0023052,GO:0023057,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032005,GO:0032268,GO:0032269,GO:0033554,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042221,GO:0042325,GO:0042326,GO:0042578,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0043902,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0046999,GO:0048308,GO:0048311,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051646,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071310,GO:0071444,GO:0071470,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080090,GO:0090304,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902532,GO:2000241,GO:2000243
Evalue1.79e-44
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10961Ggra10961Gracilaria gracilis GNS1m malegenetig00000938_pilon 108983..109990 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10961.t1.start1Ggra10961.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 108983..108985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10961.t1.CDS1Ggra10961.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 108983..109990 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10961.t1.exon1Ggra10961.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 108983..109990 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10961.t1.stop1Ggra10961.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 109988..109990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10961.t1Ggra10961.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 108983..109990 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10961.t1 ID=Ggra10961.t1|Name=Ggra10961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MPAVSPTSQTLHLSDMSVDVGQYHDPNLVHRRSMEDEMAVEQYAQFPALF
VAVYDGHGGKLAATLLRQLLHRFFLDEILRHQPALVLRTHLSPANDNVRL
PLALPSTPSDSDSESSNHSAPISDALSLEHNPIKPSCPLLNFDATSAFTR
AYAHMDSMLRLRNCSRVGATAVTCFLRTVPHVGTVLTTANCGDSRAVLCR
GGRAVRLSEDHRPVDKEERKRIETAGGFVAWSRVNGVLNVSRAFGDHCMK
SVVVSTPSVSEIVLDAADEFMVLACDGLWDFVDEKSVISTAHEAFEQGMC
SEQVAKVLVKEALQCGSTDNVSVMVVHFDELEHEP*
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spliced messenger RNA

>Ggra10961.t1 ID=Ggra10961.t1|Name=Ggra10961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000938_pilon:108983..109990+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCGTCTCGCCAACGTCGCAGACGCTACACTTGTCCGACATGTC
CGTCGACGTTGGTCAGTACCATGATCCCAACTTGGTGCACCGTCGCTCCA
TGGAGGACGAGATGGCCGTGGAGCAGTACGCCCAATTCCCCGCCCTCTTC
GTCGCCGTGTACGACGGGCACGGTGGCAAACTAGCTGCCACTCTTCTCCG
TCAGCTTCTGCACCGCTTCTTCCTGGACGAGATATTACGTCATCAGCCTG
CGCTCGTGCTGCGCACCCACCTGTCGCCCGCGAACGACAACGTGCGTCTT
CCGCTCGCGCTACCGtccactccgtccgactccgactcggagtcTTCCAA
CCATTCAGCCCCCATCTCCGACGCGCTCAGTCTGGAGCACAACCCCATCA
AGCCGTCGTGTCCGCTTCTCAACTTTGACGCCACCTCTGCATTCACGCGC
GCGTACGCGCACATGGACTCCATGCTCAGGCTGCGCAACTGCAGTCGCGT
GGGTGCCACCGCCGTCACATGTTTCCTGCGCACCGTTCCGCACGTTGGCA
CCGTTCTCACCACCGCCAATTGTGGCGACTCGCGCGCGGTGCTTTGCCGT
GGCGGACGCGCTGTGCGTCTCTCGGAGGACCACCGACCGGTGGATAAGGA
GGAAAGAAAGCGCATTGAGACCGCCGGTGGCTTTGTGGCGTGGTCGAGAG
TAAACGGTGTGCTCAATGTTTCCAGAGCGTTTGGCGACCATTGCATGAAG
AGCGTGGTGGTTTCAACGCCGTCTGTTAGCGAGATTGTGCTTGACGCTGC
CGATGAATTTATGGTACTCGCTTGTGATGGGCTTTGGGACTTTGTGGATG
AGAAGAGTGTTATTTCAACAGCGCATGAGGCGTTTGAGCAAGGCATGTGT
TCGGAACAAGTAGCTAAGGTGCTTGTCAAAGAAGCTCTGCAATGTGGCAG
TACTGATAACGTATCTGTTATGGTTGTACACTTTGACGAACTGGAACACG
AACCGTGA
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protein sequence of Ggra10961.t1

>Ggra10961.t1 ID=Ggra10961.t1|Name=Ggra10961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MPAVSPTSQTLHLSDMSVDVGQYHDPNLVHRRSMEDEMAVEQYAQFPALF
VAVYDGHGGKLAATLLRQLLHRFFLDEILRHQPALVLRTHLSPANDNVRL
PLALPSTPSDSDSESSNHSAPISDALSLEHNPIKPSCPLLNFDATSAFTR
AYAHMDSMLRLRNCSRVGATAVTCFLRTVPHVGTVLTTANCGDSRAVLCR
GGRAVRLSEDHRPVDKEERKRIETAGGFVAWSRVNGVLNVSRAFGDHCMK
SVVVSTPSVSEIVLDAADEFMVLACDGLWDFVDEKSVISTAHEAFEQGMC
SEQVAKVLVKEALQCGSTDNVSVMVVHFDELEHEP*
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mRNA from alignment at tig00000938_pilon:108983..109990+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10961.t1 ID=Ggra10961.t1|Name=Ggra10961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000938_pilon:108983..109990+ (Gracilaria gracilis GNS1m male)
ATGCCCGCCGTCTCGCCAACGTCGCAGACGCTACACTTGTCCGACATGTC
CGTCGACGTTGGTCAGTACCATGATCCCAACTTGGTGCACCGTCGCTCCA
TGGAGGACGAGATGGCCGTGGAGCAGTACGCCCAATTCCCCGCCCTCTTC
GTCGCCGTGTACGACGGGCACGGTGGCAAACTAGCTGCCACTCTTCTCCG
TCAGCTTCTGCACCGCTTCTTCCTGGACGAGATATTACGTCATCAGCCTG
CGCTCGTGCTGCGCACCCACCTGTCGCCCGCGAACGACAACGTGCGTCTT
CCGCTCGCGCTACCGtccactccgtccgactccgactcggagtcTTCCAA
CCATTCAGCCCCCATCTCCGACGCGCTCAGTCTGGAGCACAACCCCATCA
AGCCGTCGTGTCCGCTTCTCAACTTTGACGCCACCTCTGCATTCACGCGC
GCGTACGCGCACATGGACTCCATGCTCAGGCTGCGCAACTGCAGTCGCGT
GGGTGCCACCGCCGTCACATGTTTCCTGCGCACCGTTCCGCACGTTGGCA
CCGTTCTCACCACCGCCAATTGTGGCGACTCGCGCGCGGTGCTTTGCCGT
GGCGGACGCGCTGTGCGTCTCTCGGAGGACCACCGACCGGTGGATAAGGA
GGAAAGAAAGCGCATTGAGACCGCCGGTGGCTTTGTGGCGTGGTCGAGAG
TAAACGGTGTGCTCAATGTTTCCAGAGCGTTTGGCGACCATTGCATGAAG
AGCGTGGTGGTTTCAACGCCGTCTGTTAGCGAGATTGTGCTTGACGCTGC
CGATGAATTTATGGTACTCGCTTGTGATGGGCTTTGGGACTTTGTGGATG
AGAAGAGTGTTATTTCAACAGCGCATGAGGCGTTTGAGCAAGGCATGTGT
TCGGAACAAGTAGCTAAGGTGCTTGTCAAAGAAGCTCTGCAATGTGGCAG
TACTGATAACGTATCTGTTATGGTTGTACACTTTGACGAACTGGAACACG
AACCGTGA
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Coding sequence (CDS) from alignment at tig00000938_pilon:108983..109990+

>Ggra10961.t1 ID=Ggra10961.t1|Name=Ggra10961.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000938_pilon:108983..109990+ (Gracilaria gracilis GNS1m male)
ATGCCCGCCGTCTCGCCAACGTCGCAGACGCTACACTTGTCCGACATGTC
CGTCGACGTTGGTCAGTACCATGATCCCAACTTGGTGCACCGTCGCTCCA
TGGAGGACGAGATGGCCGTGGAGCAGTACGCCCAATTCCCCGCCCTCTTC
GTCGCCGTGTACGACGGGCACGGTGGCAAACTAGCTGCCACTCTTCTCCG
TCAGCTTCTGCACCGCTTCTTCCTGGACGAGATATTACGTCATCAGCCTG
CGCTCGTGCTGCGCACCCACCTGTCGCCCGCGAACGACAACGTGCGTCTT
CCGCTCGCGCTACCGtccactccgtccgactccgactcggagtcTTCCAA
CCATTCAGCCCCCATCTCCGACGCGCTCAGTCTGGAGCACAACCCCATCA
AGCCGTCGTGTCCGCTTCTCAACTTTGACGCCACCTCTGCATTCACGCGC
GCGTACGCGCACATGGACTCCATGCTCAGGCTGCGCAACTGCAGTCGCGT
GGGTGCCACCGCCGTCACATGTTTCCTGCGCACCGTTCCGCACGTTGGCA
CCGTTCTCACCACCGCCAATTGTGGCGACTCGCGCGCGGTGCTTTGCCGT
GGCGGACGCGCTGTGCGTCTCTCGGAGGACCACCGACCGGTGGATAAGGA
GGAAAGAAAGCGCATTGAGACCGCCGGTGGCTTTGTGGCGTGGTCGAGAG
TAAACGGTGTGCTCAATGTTTCCAGAGCGTTTGGCGACCATTGCATGAAG
AGCGTGGTGGTTTCAACGCCGTCTGTTAGCGAGATTGTGCTTGACGCTGC
CGATGAATTTATGGTACTCGCTTGTGATGGGCTTTGGGACTTTGTGGATG
AGAAGAGTGTTATTTCAACAGCGCATGAGGCGTTTGAGCAAGGCATGTGT
TCGGAACAAGTAGCTAAGGTGCTTGTCAAAGAAGCTCTGCAATGTGGCAG
TACTGATAACGTATCTGTTATGGTTGTACACTTTGACGAACTGGAACACG
AACCGTGA
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